Literature and Links to sites mentioned in Lecture 3
Literature
- A nice review of the various sequencing methods
Radford AD et al (2012) Journal of General Virology 93: 1853-1868
- PAM Matrices
A Model of Evolutionary Change in Proteins
M.O. Dayhoff, R.M. Schwartz, and B. C, Orcutt
Atlas of protein sequence and structure. Vol. 5, Suppl. 3. Pp. 345-352
M. 0. DAYHOFF, ed. National Biomedical Research Foundation, Washington, D.C.
- BLOSUM Matrices
Amino acid substitution matrices from protein blocks
Henikoff S, Henikoff JG
PNAS 1992 Nov 15;89(22):10915-9
- GONNET Matrices
Exhaustive matching of the entire protein sequence database
Gonnet GH, Cohen MA, Benner SA
Science 1992 Jun 5; 256(5062):1443-5
Links