Contacts of the helix formed by residues 21 - 51 (chain A) in PDB entry 1AR4


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLY 21 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12A  TYR*     3.2    27.3    -      -       -      +
     13A  SER*     4.1     4.0    -      -       -      -
     16A  GLU*     3.0    20.4    +      -       -      +
     19A  ILE      3.8     0.2    +      -       -      -
     20A  SER*     1.3    70.2    -      -       -      +
     22A  GLU*     1.3    59.8    +      -       -      +
     24A  MET*     3.7     0.9    -      -       -      +
     25A  GLU*     3.0    40.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 22 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20A  SER*     3.1    11.0    +      -       -      +
     21A  GLY*     1.3    77.6    -      -       -      +
     23A  ILE*     1.3    60.4    +      -       -      +
     25A  GLU*     3.8     8.1    -      -       -      +
     26A  LEU*     3.3    30.1    +      -       +      +
    169A  LEU*     3.7    36.3    -      -       +      +
    172B  LYS*     4.4    15.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 23 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19A  ILE*     4.6    11.0    -      -       +      -
     20A  SER*     3.2    24.7    +      -       -      +
     22A  GLU*     1.3    75.0    -      -       -      +
     24A  MET*     1.3    55.9    +      -       -      +
     26A  LEU*     3.3     3.3    +      -       -      +
     27A  HIS*     2.7    48.3    +      -       +      +
    165A  HIS      4.0    14.4    -      -       -      +
    166A  ALA*     3.5    29.2    -      -       -      +
    167A  PHE*     4.1     9.4    -      -       -      -
    169A  LEU*     4.0    24.7    -      -       +      -
    170A  GLN*     3.9    33.9    -      -       +      +
    171A  TYR*     5.7     0.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 24 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      8A  LEU*     4.3     6.7    -      -       +      -
     10A  TYR*     3.6    35.0    -      -       +      +
     12A  TYR*     3.2    37.4    -      -       +      +
     15A  LEU*     3.7    18.2    -      -       +      -
     19A  ILE*     3.7    25.8    -      -       +      +
     20A  SER      3.2    12.9    +      -       -      +
     21A  GLY      3.7     2.2    -      -       -      +
     23A  ILE*     1.3    78.4    -      -       -      +
     25A  GLU*     1.3    56.2    -      -       -      +
     27A  HIS*     3.9     5.3    -      -       -      +
     28A  HIS*     2.9    35.0    +      -       -      +
     78A  PHE*     5.9     0.7    -      -       -      -
     79A  TRP*     4.0    26.9    -      -       +      -
     82A  MET*     4.3     3.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 25 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12A  TYR*     3.5    38.3    -      -       +      +
     21A  GLY      3.0    23.9    +      -       -      +
     22A  GLU*     3.8     7.5    -      -       -      +
     23A  ILE      3.2     0.2    -      -       -      -
     24A  MET*     1.3    75.8    -      -       -      +
     26A  LEU*     1.3    59.3    +      -       +      +
     29A  ASP*     2.9    43.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 26 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22A  GLU*     3.3    17.4    +      -       +      +
     23A  ILE*     3.3     3.9    +      -       -      +
     25A  GLU*     1.3    80.6    -      -       +      +
     27A  HIS*     1.3    63.6    +      -       -      +
     30A  LYS*     3.0    41.5    +      -       +      +
     31A  HIS*     3.2     7.6    +      -       +      +
    169A  LEU*     3.7    23.8    -      -       +      -
    168B  TYR*     3.9    17.9    -      -       +      +
    172B  LYS*     3.7    29.2    -      -       +      -
    173B  ASN*     3.5    23.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 27 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23A  ILE*     2.7    33.7    +      -       +      +
     24A  MET*     3.9     4.7    -      -       -      +
     26A  LEU*     1.3    73.9    -      -       -      +
     28A  HIS*     1.3    56.9    +      -       -      +
     31A  HIS*     3.4     9.4    -      -       +      +
     32A  HIS*     3.1    26.2    +      -       -      +
     75A  HIS*     3.1    11.5    +      +       -      -
     78A  PHE*     3.7    22.7    -      +       -      -
     79A  TRP*     3.5    19.5    -      +       +      -
    161A  ASP*     3.0    14.4    -      -       -      -
    165A  HIS*     3.3    17.6    +      +       +      +
    166A  ALA*     3.8    17.8    +      -       +      -
    202A   MN      2.1    31.7    +      -       -      -
    168B  TYR*     5.1     0.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with HIS 28 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      5A  LEU*     3.6    24.2    -      -       +      +
      6A  PRO      2.6    31.9    +      -       -      -
      7A  GLU*     4.1    13.1    +      -       -      -
      8A  LEU*     3.4    39.6    +      -       +      +
     12A  TYR*     3.9     8.2    +      -       +      -
     24A  MET      2.9    19.0    +      -       -      +
     27A  HIS*     1.3    76.6    -      -       -      +
     29A  ASP*     1.3    87.7    +      -       -      +
     30A  LYS      3.4     0.7    +      -       -      -
     32A  HIS*     3.3    19.5    -      -       -      +
     33A  LYS      3.5     5.5    +      -       -      -
     79A  TRP*     3.4    27.2    +      +       +      -
----------------------------------------------------------
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Residues in contact with ASP 29 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      5A  LEU*     4.9     4.6    -      -       -      +
     12A  TYR*     2.7    34.5    +      -       -      -
     25A  GLU*     2.9    29.9    +      -       -      +
     28A  HIS*     1.3    85.3    -      -       -      +
     30A  LYS*     1.3    71.6    +      -       -      +
     33A  LYS*     3.0    32.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 30 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25A  GLU      6.3     0.2    -      -       -      -
     26A  LEU*     3.0    36.0    +      -       +      +
     29A  ASP*     1.3    95.2    +      -       +      +
     31A  HIS*     1.3    64.1    +      -       -      +
     32A  HIS      3.5     0.2    -      -       -      -
     33A  LYS*     3.7    24.2    +      -       -      +
     34A  ALA*     3.1    23.7    +      -       -      +
    173B  ASN*     3.9    34.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 31 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26A  LEU      3.2    14.4    +      -       -      -
     27A  HIS*     3.4    23.1    -      -       +      +
     30A  LYS*     1.3    75.9    -      -       -      +
     32A  HIS*     1.3    66.1    +      -       -      +
     34A  ALA*     3.2    17.1    +      -       -      +
     35A  TYR*     3.1    32.2    -      +       +      -
     75A  HIS*     5.1     0.2    -      -       -      +
    165A  HIS*     3.7    33.2    +      +       +      +
    164B  GLU*     4.0     5.2    +      -       -      -
    168B  TYR*     2.7    42.9    +      +       -      -
    173B  ASN*     3.8    20.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 32 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      5A  LEU*     3.5     9.6    -      -       +      +
      6A  PRO*     3.7    17.9    -      -       +      +
     27A  HIS      3.1    13.7    +      -       -      +
     28A  HIS*     3.3    16.4    +      -       -      +
     30A  LYS      3.5     0.2    -      -       -      -
     31A  HIS*     1.3    72.6    -      -       -      +
     33A  LYS*     1.3    67.4    +      -       -      +
     35A  TYR*     3.0    17.6    +      +       -      +
     36A  VAL*     3.1    10.9    +      -       +      +
     71A  GLY      4.4     1.3    -      -       -      -
     72A  HIS*     3.0    41.7    +      +       -      -
     75A  HIS*     3.7    13.8    -      -       +      +
     76A  SER*     3.5    24.5    -      -       -      -
     79A  TRP*     2.9    31.1    +      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 33 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      5A  LEU*     4.0    25.3    -      -       +      +
     28A  HIS      3.5     3.8    +      -       -      -
     29A  ASP      3.0    27.9    +      -       -      +
     30A  LYS*     3.9    27.2    -      -       -      +
     31A  HIS      3.3     0.4    -      -       -      -
     32A  HIS*     1.3    76.9    -      -       -      +
     34A  ALA*     1.3    57.7    +      -       -      +
     36A  VAL*     3.2     4.8    +      -       +      +
     37A  ASP*     3.0    45.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 34 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30A  LYS      3.1    14.0    +      -       -      +
     31A  HIS*     3.3    13.0    -      -       +      +
     32A  HIS      3.1     0.6    -      -       -      -
     33A  LYS*     1.3    79.7    -      -       -      +
     35A  TYR*     1.3    63.1    +      -       +      +
     37A  ASP*     3.6     7.2    +      -       -      +
     38A  GLY*     2.9    24.9    +      -       -      -
     68A  ASN*     3.9     3.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 35 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31A  HIS*     3.1    34.6    +      +       +      -
     32A  HIS*     3.0     8.5    +      +       -      +
     34A  ALA*     1.3    77.4    -      -       +      +
     36A  VAL*     1.3    60.0    +      -       -      +
     38A  GLY      3.3     0.3    +      -       -      -
     39A  ALA*     2.9    29.8    +      -       -      +
     67A  PHE*     3.9    17.3    -      +       -      -
     68A  ASN*     3.4    42.9    -      -       -      +
     71A  GLY*     4.0     6.3    -      -       -      -
     72A  HIS*     3.9     9.2    -      -       -      +
     75A  HIS*     3.3    36.1    -      +       -      -
    146A  HIS*     3.1    28.6    +      +       -      -
    163A  TRP*     4.0     8.0    -      -       -      -
    165A  HIS*     3.9    17.5    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 36 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      3A  TYR*     3.5    34.7    -      -       +      +
      4A  THR*     3.9     7.4    -      -       -      -
      5A  LEU*     4.0    21.1    -      -       +      +
     32A  HIS*     3.1    18.7    +      -       +      +
     33A  LYS*     3.2     7.8    +      -       -      +
     35A  TYR*     1.3    76.7    -      -       -      +
     37A  ASP*     1.3    67.6    +      -       -      +
     39A  ALA*     3.3     4.9    +      -       -      +
     40A  ASN*     3.1    30.7    +      -       -      +
     72A  HIS*     3.7    32.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 37 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33A  LYS*     3.0    41.0    +      -       -      +
     34A  ALA*     3.9     6.7    -      -       -      +
     36A  VAL*     1.3    80.8    -      -       -      +
     38A  GLY*     1.3    57.8    +      -       -      +
     40A  ASN*     3.5     8.4    +      -       -      +
     41A  THR*     2.9    33.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 38 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34A  ALA      2.9    13.8    +      -       -      -
     36A  VAL      3.3     0.2    -      -       -      -
     37A  ASP*     1.3    76.3    -      -       -      +
     39A  ALA*     1.3    58.7    +      -       -      +
     41A  THR*     3.5     6.2    +      -       -      -
     42A  ALA*     3.1    27.7    +      -       -      +
     64A  ASP*     5.2     0.7    -      -       -      +
     68A  ASN*     3.7    28.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 39 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      3A  TYR*     3.5    27.0    -      -       +      -
     35A  TYR      2.9    17.4    +      -       -      +
     36A  VAL*     3.7     3.4    -      -       -      +
     38A  GLY*     1.3    73.4    -      -       -      +
     40A  ASN*     1.3    65.9    +      -       -      +
     42A  ALA*     3.4     7.6    +      -       -      +
     43A  LEU*     3.2    26.2    +      -       -      +
     65A  LEU*     4.3     3.8    -      -       +      +
     68A  ASN*     3.4     5.1    -      -       -      +
     69A  LEU*     4.0    26.2    -      -       +      +
     72A  HIS*     5.4     1.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 40 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      1A  ALA*     3.3    18.5    -      -       +      +
      2A  VAL*     3.4    10.0    +      -       -      +
      3A  TYR*     2.9    51.6    +      -       -      -
     36A  VAL*     3.1    27.2    +      -       -      +
     37A  ASP*     3.8     8.7    +      -       -      +
     39A  ALA*     1.3    77.8    -      -       -      +
     41A  THR*     1.3    61.4    +      -       -      +
     43A  LEU*     3.4     6.8    +      -       -      +
     44A  ASP*     3.1    32.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 41 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37A  ASP*     2.9    22.1    +      -       -      +
     38A  GLY*     3.8     7.4    -      -       -      -
     40A  ASN*     1.3    75.1    -      -       -      +
     42A  ALA*     1.3    59.8    +      -       -      +
     44A  ASP*     3.2     9.0    +      -       +      +
     45A  LYS*     2.9    50.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 42 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38A  GLY      3.1    19.0    +      -       -      +
     39A  ALA      3.6     5.4    -      -       -      +
     41A  THR*     1.3    77.3    -      -       -      +
     43A  LEU*     1.3    56.9    +      -       -      +
     45A  LYS*     3.4     7.4    +      -       -      +
     46A  LEU*     3.0    34.8    +      -       -      +
     61A  LEU*     4.2     9.8    -      -       -      +
     64A  ASP*     4.2     8.7    -      -       +      -
     65A  LEU*     3.8    38.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 43 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      2A  VAL*     3.8    30.5    -      -       +      -
      3A  TYR*     3.4    33.4    -      -       +      +
     39A  ALA      3.2    10.8    +      -       -      +
     40A  ASN*     3.7     8.1    -      -       -      +
     41A  THR      3.2     0.2    -      -       -      -
     42A  ALA*     1.3    76.5    -      -       -      +
     44A  ASP*     1.3    61.0    +      -       -      +
     46A  LEU*     3.2    10.2    +      -       +      +
     47A  ALA*     2.9    29.0    +      -       -      +
     50A  ARG*     5.2     1.2    +      -       -      -
     65A  LEU*     4.1    26.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 44 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40A  ASN*     3.1    21.6    +      -       -      +
     41A  THR*     3.2    11.0    +      -       -      +
     43A  LEU*     1.3    77.1    -      -       -      +
     45A  LYS*     1.3    63.3    +      -       +      +
     47A  ALA*     3.3     9.1    +      -       -      +
     48A  GLU*     3.1    27.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 45 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41A  THR*     2.9    36.8    +      -       +      +
     42A  ALA*     3.6     3.1    -      -       -      +
     43A  LEU      3.2     0.2    -      -       -      -
     44A  ASP*     1.3    78.3    -      -       +      +
     46A  LEU*     1.3    60.3    +      -       -      +
     48A  GLU*     3.4    27.8    +      -       -      +
     49A  ALA*     3.0    27.4    +      -       -      +
     61A  LEU*     3.6    34.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 46 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42A  ALA      3.0    23.7    +      -       -      +
     43A  LEU*     3.6    12.6    -      -       +      +
     45A  LYS*     1.3    75.2    -      -       -      +
     47A  ALA*     1.3    62.9    +      -       -      +
     49A  ALA*     3.3     7.6    +      -       +      +
     50A  ARG*     3.2    41.0    +      -       -      +
     55A  PHE*     5.0     2.2    -      -       +      -
     58A  ILE*     4.0    22.2    -      -       +      -
     61A  LEU*     3.8    30.7    -      -       +      +
     62A  GLU*     4.8     8.7    -      -       -      +
     65A  LEU*     3.8    31.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 47 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43A  LEU      2.9    12.9    +      -       -      +
     44A  ASP*     3.4    12.8    -      -       -      +
     45A  LYS      3.2     0.2    -      -       -      -
     46A  LEU*     1.3    77.3    -      -       -      +
     48A  GLU*     1.3    61.5    +      -       -      +
     50A  ARG*     3.2    27.7    +      -       -      +
     51A  ASP*     3.1    30.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 48 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44A  ASP      3.1    16.1    +      -       -      +
     45A  LYS*     3.5    29.6    +      -       -      +
     46A  LEU      3.4     0.2    -      -       -      -
     47A  ALA*     1.3    76.0    -      -       -      +
     49A  ALA*     1.3    63.8    +      -       -      +
     51A  ASP*     3.3     9.5    +      -       +      +
     52A  LYS*     3.1    58.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 49 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45A  LYS      3.0    18.2    +      -       -      +
     46A  LEU*     3.5    11.0    -      -       +      +
     47A  ALA      3.2     0.4    -      -       -      -
     48A  GLU*     1.3    77.8    -      -       -      +
     50A  ARG*     1.3    56.6    +      -       -      +
     53A  ALA*     2.9     7.6    +      -       -      -
     54A  ASP*     2.9    50.4    +      -       -      +
     55A  PHE*     3.9    19.6    -      -       +      -
     61A  LEU*     4.6    10.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 50 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43A  LEU      5.2     1.0    +      -       -      -
     46A  LEU*     3.2    28.7    +      -       -      +
     47A  ALA*     3.5    30.9    +      -       -      +
     48A  GLU      3.2     0.2    -      -       -      -
     49A  ALA*     1.3    75.5    -      -       -      +
     51A  ASP*     1.3    67.7    +      -       -      +
     53A  ALA*     3.2    12.5    +      -       -      +
     55A  PHE*     3.8    26.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 51 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47A  ALA*     3.1    24.0    +      -       -      +
     48A  GLU*     3.3    11.7    +      -       +      +
     50A  ARG*     1.3    80.0    -      -       -      +
     52A  LYS*     1.3    63.5    +      -       +      +
     53A  ALA*     3.7     0.9    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il