Contacts of the helix formed by residues 114 - 144 (chain V) in PDB entry 1BFR


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with TYR 114 (chain V).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    102S  ARG*     3.9     8.1    -      -       -      +
    105S  ILE*     3.6    38.6    -      -       +      -
    106S  GLY*     3.9    11.6    -      -       -      -
    109S  ASP*     5.9     2.3    -      -       +      +
    117S  ARG*     5.2     3.4    -      -       -      -
    121S  ILE*     3.8    31.4    -      -       +      -
    124S  LEU*     4.1     9.9    -      -       +      -
    109V  ASP*     4.0    31.2    +      -       -      -
    112V  HIS*     2.9    58.7    +      +       +      -
    113V  ASP*     1.3    71.4    -      -       -      +
    115V  VAL*     1.3    55.6    +      -       -      +
    117V  ARG*     3.4    21.1    -      -       -      +
    118V  ASP*     2.8    33.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 115 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    102S  ARG*     5.3     0.4    -      -       -      +
    121S  ILE*     4.6     5.2    -      -       +      +
    124S  LEU*     4.2    10.4    -      -       +      +
    125S  ARG*     3.7    52.0    +      -       +      +
    128S  GLU*     3.6    31.2    -      -       +      +
     61V  ARG*     3.7    17.0    -      -       -      +
    113V  ASP*     3.4     0.8    +      -       -      -
    114V  TYR*     1.3    75.7    -      -       -      +
    116V  SER*     1.4    61.9    +      -       -      +
    118V  ASP*     3.3     5.7    +      -       -      +
    119V  MET*     3.0    23.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 116 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7V  VAL*     4.0    12.3    -      -       -      +
     11V  LEU*     4.3     7.1    -      -       -      +
     61V  ARG*     3.0    25.4    +      -       -      +
     65V  LEU*     3.8     7.6    -      -       -      +
    108V  ALA*     4.7     0.4    -      -       -      -
    113V  ASP*     2.8    38.4    +      -       -      -
    115V  VAL*     1.4    72.9    -      -       -      +
    117V  ARG*     1.3    63.2    +      -       -      +
    119V  MET*     3.4     9.6    +      -       -      +
    120V  MET*     3.1    35.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 117 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    109R  ASP*     4.9     1.6    +      -       -      -
    114R  TYR*     5.2     3.8    -      -       -      -
    117R  ARG*     3.0    37.0    -      -       -      +
    117S  ARG*     3.2    24.2    -      -       -      +
    118S  ASP*     5.1     0.4    +      -       -      -
    121S  ILE*     3.4    13.7    -      -       -      +
    105V  ILE*     3.6    26.0    -      -       +      +
    108V  ALA*     3.9     7.9    -      -       +      +
    109V  ASP*     3.2    40.8    +      -       -      +
    113V  ASP      3.0    14.5    +      -       -      +
    114V  TYR*     3.4    17.0    +      -       -      +
    116V  SER*     1.3    75.0    -      -       -      +
    118V  ASP*     1.3    85.4    +      -       -      +
    120V  MET*     3.1    14.5    +      -       -      +
    121V  ILE*     3.0    26.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 118 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    117R  ARG*     5.1     0.3    +      -       -      -
    118R  ASP*     5.5     4.4    -      -       -      +
    118S  ASP*     5.7     3.5    -      -       -      +
    121S  ILE*     3.5    15.6    -      -       +      +
    125S  ARG*     3.4    30.5    +      -       -      +
    114V  TYR      2.8    20.1    +      -       -      +
    115V  VAL      3.3     2.9    +      -       -      +
    117V  ARG*     1.3   103.8    +      -       -      +
    119V  MET*     1.3    63.9    +      -       -      +
    121V  ILE*     3.2    11.0    +      -       -      +
    122V  GLU*     3.1    30.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 119 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11V  LEU*     4.3    14.4    -      -       +      -
     57V  ARG*     3.6    47.1    +      -       -      +
     58V  TYR*     3.5    37.9    -      -       +      -
     61V  ARG*     4.0    33.4    -      -       +      -
    115V  VAL*     3.0    14.2    +      -       +      +
    116V  SER*     3.4     9.0    -      -       -      +
    118V  ASP*     1.3    75.3    -      -       -      +
    120V  MET*     1.3    68.1    +      -       +      +
    122V  GLU*     3.4     4.5    +      -       -      +
    123V  ILE*     3.1    27.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with MET 120 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7V  VAL*     5.3     2.2    -      -       +      -
     10V  TYR*     5.7     1.6    -      -       +      -
     11V  LEU*     3.9    16.4    -      -       +      -
     14V  LEU*     3.6    27.1    -      -       -      -
     58V  TYR*     4.4     6.5    -      -       +      -
    101V  LEU*     4.0    12.2    -      -       +      +
    104V  ALA*     3.7    24.5    -      -       +      +
    105V  ILE*     3.6    15.5    -      -       +      +
    108V  ALA*     3.6    30.5    -      -       +      -
    116V  SER*     3.1    21.8    +      -       -      +
    117V  ARG*     3.6     7.4    -      -       -      +
    119V  MET*     1.3    86.0    -      -       +      +
    121V  ILE*     1.3    59.1    +      -       -      +
    123V  ILE*     3.3     6.4    +      -       -      +
    124V  LEU*     2.8    29.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 121 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    114R  TYR*     3.8    28.3    -      -       +      +
    115R  VAL*     4.6     5.3    -      -       +      +
    117R  ARG*     3.4    29.2    -      -       -      +
    118R  ASP*     3.4    26.5    -      -       -      +
    105V  ILE*     3.7    30.5    -      -       +      -
    117V  ARG*     3.0    26.0    +      -       -      +
    118V  ASP*     3.2    10.1    +      -       -      +
    120V  MET*     1.3    72.5    -      -       -      +
    122V  GLU*     1.3    56.6    +      -       -      +
    124V  LEU*     3.3     3.0    +      -       +      +
    125V  ARG*     2.9    36.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 122 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    125S  ARG*     5.0    10.6    +      -       -      -
     57V  ARG*     3.0    36.6    +      -       -      +
    118V  ASP*     3.1    17.8    +      -       -      +
    119V  MET*     3.4     7.4    -      -       -      +
    121V  ILE*     1.3    72.0    -      -       +      +
    123V  ILE*     1.3    65.4    +      -       -      +
    125V  ARG*     3.4    28.3    +      -       -      +
    126V  ASP*     3.2    27.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 123 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     18V  GLU*     4.0     7.4    -      -       -      +
     54V  HIS*     3.6    46.7    -      -       +      +
     57V  ARG*     4.1    17.3    -      -       +      +
     58V  TYR*     3.5    47.1    -      -       +      +
    101V  LEU*     4.7     5.2    -      -       +      -
    119V  MET*     3.1    27.9    +      -       +      +
    120V  MET*     3.3     6.3    +      -       -      +
    122V  GLU*     1.3    73.5    -      -       -      +
    124V  LEU*     1.3    61.5    +      -       -      +
    126V  ASP*     3.1     5.0    +      -       -      +
    127V  GLU*     3.0    24.5    +      -       +      +
    202V   MN      4.2     2.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 124 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    114R  TYR*     4.2    16.8    -      -       +      -
    115R  VAL*     4.0    11.9    -      -       +      -
     98V  ALA*     4.1    24.9    -      -       +      +
    101V  LEU*     3.9    27.7    -      -       +      +
    102V  ARG*     3.8    34.1    -      -       +      +
    105V  ILE*     3.8    22.9    -      -       +      -
    120V  MET      2.8    20.4    +      -       -      +
    121V  ILE*     3.3     6.0    +      -       -      +
    123V  ILE*     1.3    70.1    -      -       -      +
    125V  ARG*     1.3    57.9    +      -       -      +
    127V  GLU*     3.2     3.0    +      -       +      +
    128V  GLU*     2.9    32.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 125 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    115R  VAL*     3.8    29.0    +      -       +      +
    118R  ASP*     3.6    35.2    +      -       -      +
    122R  GLU*     4.8    10.6    +      -       -      -
    121V  ILE*     2.9    24.9    +      -       -      +
    122V  GLU*     3.5    29.2    +      -       -      +
    124V  LEU*     1.3    76.9    -      -       -      +
    126V  ASP*     1.3    64.6    +      -       -      +
    128V  GLU*     3.5     3.9    +      -       -      +
    129V  GLY*     3.2    17.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 126 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     50V  ASP*     5.1     7.1    -      -       -      +
     54V  HIS*     2.8    33.2    +      -       +      -
     57V  ARG*     5.8     1.6    +      -       -      -
    122V  GLU      3.2    13.2    +      -       -      +
    123V  ILE*     3.1     8.5    +      -       -      +
    125V  ARG*     1.3    77.9    -      -       -      +
    127V  GLU*     1.3    63.3    +      -       -      +
    129V  GLY*     3.2     4.1    +      -       -      -
    130V  HIS*     3.1    32.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 127 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51V  GLU*     2.9     4.0    -      -       -      +
     54V  HIS*     3.1    13.3    -      -       -      -
     94V  GLU*     2.8    24.3    -      -       -      +
     97V  GLY*     5.8     2.2    -      -       -      -
     98V  ALA*     5.2     5.8    -      -       +      +
    101V  LEU*     4.1    21.5    -      -       +      -
    123V  ILE*     3.0    17.3    +      -       +      +
    124V  LEU*     3.2    10.0    +      -       +      +
    126V  ASP*     1.3    70.8    -      -       -      +
    128V  GLU*     1.3    64.9    +      -       -      +
    130V  HIS*     3.0     3.5    +      -       -      -
    131V  ILE*     2.9    33.2    +      -       +      +
    201V   MN      2.2    31.7    +      -       -      -
    202V   MN      2.4    31.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 128 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      1R  MET*     3.6    22.3    -      -       +      +
     61R  ARG*     2.8    38.0    +      -       -      +
     64R  PHE*     3.6    12.0    -      -       +      -
    115R  VAL*     3.7    16.8    -      -       +      +
    102V  ARG*     2.7    34.2    +      -       -      +
    124V  LEU*     2.9    27.2    +      -       +      +
    125V  ARG*     3.9     5.6    -      -       -      +
    127V  GLU*     1.3    70.2    -      -       -      +
    129V  GLY*     1.3    56.4    +      -       -      +
    131V  ILE*     3.4    15.7    +      -       +      +
    132V  ASP*     2.9    28.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 129 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    125V  ARG      3.2    11.6    +      -       -      -
    126V  ASP*     3.2     5.6    +      -       -      -
    127V  GLU      3.2     1.2    -      -       -      -
    128V  GLU*     1.3    73.4    -      -       -      +
    130V  HIS*     1.3    66.4    +      -       -      +
    132V  ASP*     3.4     8.3    +      -       -      +
    133V  TRP*     3.2    19.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 130 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25V  TYR*     3.6    13.5    +      -       -      +
     47V  GLU*     3.5    35.8    -      -       +      +
     50V  ASP*     2.8    39.7    +      -       +      -
     51V  GLU*     3.4     7.8    +      -       -      -
     54V  HIS*     4.9     1.3    -      +       -      -
     94V  GLU*     3.2    13.2    +      -       -      +
    126V  ASP*     3.1    15.4    +      -       -      +
    127V  GLU*     3.0     6.8    +      -       -      +
    129V  GLY*     1.3    72.8    -      -       -      +
    131V  ILE*     1.3    66.0    +      -       -      +
    133V  TRP*     3.2     3.3    +      -       -      +
    134V  LEU*     2.9    29.0    +      -       -      +
    201V   MN      2.1    35.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 131 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      1R  MET*     4.2    21.8    -      -       +      -
     64R  PHE*     4.6     1.3    -      -       +      -
     91V  LEU*     3.8    21.7    -      -       +      +
     94V  GLU*     3.6    23.6    -      -       +      +
     95V  LEU*     3.7    25.1    -      -       +      -
     98V  ALA*     4.3    18.8    -      -       +      -
    127V  GLU      2.9    20.0    +      -       -      +
    128V  GLU*     3.5    17.7    -      -       +      +
    130V  HIS*     1.3    75.8    -      -       -      +
    132V  ASP*     1.3    62.7    +      -       -      +
    134V  LEU*     3.3     2.5    +      -       -      +
    135V  GLU*     3.0    43.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 132 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34Q  ASN*     4.2    12.8    -      -       -      +
     64R  PHE*     3.7    29.9    -      -       +      +
    128V  GLU      2.9    16.0    +      -       -      +
    129V  GLY*     3.6    11.4    -      -       -      +
    130V  HIS      3.3     0.4    -      -       -      -
    131V  ILE*     1.3    72.7    -      -       -      +
    133V  TRP*     1.3    62.7    +      -       -      +
    135V  GLU*     3.9     6.6    -      -       -      +
    136V  THR*     3.1    37.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with TRP 133 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39V  ARG*     3.9     9.3    -      -       -      +
     40V  LEU*     4.1    21.3    -      -       +      -
     43V  VAL*     3.5    42.2    -      -       +      +
     44V  GLU*     3.5    28.5    -      -       +      -
     47V  GLU*     3.8    20.2    -      -       -      +
     87V  LEU*     4.8     5.8    -      -       +      -
    129V  GLY      3.2     8.6    +      -       -      +
    130V  HIS      3.2     6.8    +      -       -      +
    132V  ASP*     1.3    78.0    -      -       -      +
    134V  LEU*     1.3    91.1    +      -       +      +
    136V  THR*     3.2     5.2    +      -       -      -
    137V  GLU*     3.0    60.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 134 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25V  TYR*     3.8    21.5    -      -       -      +
     44V  GLU*     4.1     5.4    -      -       -      +
     47V  GLU*     4.6     0.9    -      -       -      +
     87V  LEU*     3.8    29.8    -      -       +      +
     90V  ASP*     3.9    14.6    -      -       +      -
     91V  LEU*     3.8    34.3    -      -       +      +
     94V  GLU*     4.1     7.0    -      -       +      -
    130V  HIS      2.9    20.3    +      -       -      +
    131V  ILE*     3.9     3.4    -      -       -      +
    133V  TRP*     1.3   101.1    -      -       +      +
    135V  GLU*     1.3    63.6    +      -       -      +
    137V  GLU*     3.2     3.7    +      -       -      +
    138V  LEU*     3.0    30.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 135 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      1R  MET*     3.0    40.6    +      -       -      +
     64R  PHE*     4.1    11.3    -      -       -      -
     66R  GLU*     4.3     4.4    -      -       -      +
     91V  LEU*     4.1    23.6    -      -       +      +
     95V  LEU*     5.5     2.3    -      -       -      +
    131V  ILE*     3.0    27.2    +      -       -      +
    132V  ASP*     3.9     5.1    -      -       -      +
    134V  LEU*     1.3    75.5    -      -       -      +
    136V  THR*     1.3    63.5    +      -       -      +
    138V  LEU*     3.3     4.4    +      -       -      +
    139V  ASP*     3.0    31.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 136 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34Q  ASN      3.5    13.3    +      -       -      +
     35Q  TRP      3.6     8.1    -      -       -      +
     36Q  GLY*     3.5    37.2    -      -       -      +
    132V  ASP*     3.1    25.5    +      -       -      -
    133V  TRP*     3.7     5.6    -      -       -      -
    135V  GLU*     1.3    76.4    -      -       -      +
    137V  GLU*     1.3    67.0    +      -       -      +
    139V  ASP*     3.2     7.5    +      -       +      +
    140V  LEU*     2.9    28.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 137 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39V  ARG*     3.1    38.7    +      -       -      -
     87V  LEU*     4.2    10.3    -      -       +      -
    133V  TRP*     3.0    46.8    +      -       +      +
    134V  LEU*     3.7     6.3    -      -       -      +
    136V  THR*     1.3    75.8    -      -       -      +
    138V  LEU*     1.3    64.3    +      -       -      +
    140V  LEU*     3.0    18.5    +      -       -      +
    141V  ILE*     2.9    29.1    +      -       -      +
    149V  TYR*     2.6    37.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 138 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     84V  GLU*     4.0    20.0    -      -       +      +
     87V  LEU*     3.8    27.1    -      -       +      +
     88V  ARG*     3.9    50.3    -      -       +      +
     91V  LEU*     3.6    30.5    -      -       +      -
    134V  LEU      3.0    18.1    +      -       -      +
    135V  GLU*     3.7     4.3    -      -       -      +
    137V  GLU*     1.3    77.3    -      -       -      +
    139V  ASP*     1.3    61.1    +      -       -      +
    141V  ILE*     3.5     9.1    +      -       +      +
    142V  GLN*     2.8    29.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 139 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35Q  TRP*     5.7     3.6    -      -       -      +
    135V  GLU*     3.0    21.7    +      -       -      +
    136V  THR*     3.6     9.4    -      -       +      +
    138V  LEU*     1.3    74.2    -      -       -      +
    140V  LEU*     1.3    61.8    +      -       +      +
    142V  GLN*     3.2    12.1    +      -       -      +
    143V  LYS*     2.9    53.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 140 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35Q  TRP      3.4    19.7    -      -       -      +
     36Q  GLY*     4.3     7.2    -      -       -      +
     37Q  LEU*     3.9    19.3    -      -       +      -
    150Q  LEU*     5.8     1.1    -      -       +      -
    154Q  ILE*     4.3    13.5    -      -       +      -
    136V  THR*     2.9    37.8    +      -       +      +
    137V  GLU*     3.5    18.6    -      -       -      +
    139V  ASP*     1.3    71.5    -      -       +      +
    141V  ILE*     1.3    63.3    +      -       -      +
    143V  LYS*     3.2    15.2    +      -       +      +
    144V  MET*     2.9    53.4    +      -       +      +
    149V  TYR*     4.5     9.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 141 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     83V  VAL*     4.6     3.6    -      -       +      -
     84V  GLU*     4.2    30.3    -      -       +      +
     87V  LEU*     4.1    19.1    -      -       +      -
    137V  GLU      2.9    18.9    +      -       -      +
    138V  LEU*     3.6    19.7    -      -       +      +
    139V  ASP      3.3     0.2    -      -       -      -
    140V  LEU*     1.3    73.1    -      -       -      +
    142V  GLN*     1.3    64.5    +      -       -      +
    145V  GLY*     3.0    24.4    +      -       -      -
    146V  LEU*     3.8    29.5    +      -       +      +
    149V  TYR*     3.7    39.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 142 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    147Q  GLN*     4.6     2.9    +      -       -      -
     84V  GLU*     3.2    30.3    +      -       -      +
     88V  ARG*     3.4    15.5    +      -       -      +
    138V  LEU*     2.8    25.0    +      -       -      +
    139V  ASP*     3.2    11.3    +      -       -      +
    141V  ILE*     1.3    81.0    -      -       -      +
    143V  LYS*     1.3    64.4    +      -       +      +
    145V  GLY*     3.7     5.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 143 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35Q  TRP*     3.7    46.0    +      -       -      +
     37Q  LEU*     5.6     3.3    -      -       +      +
    146Q  LEU*     5.9     1.6    -      -       -      +
    147Q  GLN*     3.6    16.3    +      -       -      +
    150Q  LEU*     3.7    30.9    -      -       +      +
    139V  ASP*     2.9    44.8    +      -       -      +
    140V  LEU*     3.2    13.4    +      -       +      +
    142V  GLN*     1.3    75.8    -      -       +      +
    144V  MET*     1.3    59.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 144 (chain V). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    147Q  GLN*     3.4    40.4    +      -       -      +
    150Q  LEU*     4.1     7.0    -      -       +      -
    151Q  GLN*     3.7    41.3    -      -       -      +
    154Q  ILE*     4.0    20.4    -      -       +      -
    140V  LEU*     2.9    51.3    +      -       +      +
    143V  LYS*     1.3    73.7    -      -       -      +
    145V  GLY*     1.3    69.2    +      -       -      +
    148V  ASN*     3.3    16.9    +      -       +      +
    149V  TYR*     3.9    24.2    -      -       -      +
    152V  ALA*     5.1     0.2    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il