Contacts of the strand formed by residues 76 - 92 (chain C) in PDB entry 1BTG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TRP 76 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79A TYR* 3.8 24.7 - + - -
12B PHE* 4.2 17.7 - + + -
69B ARG* 4.9 9.4 - - + -
70B GLY* 3.7 28.7 - - - -
71C ILE* 4.0 12.6 - - + +
72C ASP* 2.8 28.6 + - + +
73C SER* 3.3 23.4 + - - +
75C HIS* 1.3 86.9 + - + +
77C ASN* 1.3 63.4 + - - +
78C SER 4.4 0.2 + - - -
112C LEU* 3.5 38.4 - - + -
113C SER 3.6 13.9 - - - -
114C ARG* 3.3 54.0 - - + +
115C LYS* 3.2 15.3 - - - +
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Residues in contact with ASN 77 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66C SER 5.3 2.9 + - - -
73C SER* 5.4 0.6 + - - -
76C TRP* 1.3 74.3 + - - +
78C SER* 1.3 60.8 + - - +
79C TYR* 5.9 0.2 - - - -
112C LEU* 3.3 3.1 - - - -
113C SER* 2.6 56.6 + - - +
114C ARG 4.5 2.1 - - - +
115C LYS* 3.3 37.2 + - - +
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Residues in contact with SER 78 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C ASN* 4.8 0.9 + - - +
66C SER 3.4 13.6 + - - +
67C GLY* 3.4 12.8 - - - -
68C CYS* 3.2 30.2 + - - -
71C ILE* 3.6 25.8 - - - +
73C SER* 5.8 0.2 + - - -
77C ASN* 1.3 76.6 - - - +
79C TYR* 1.3 72.4 + - - +
111C VAL 3.3 11.7 - - - -
112C LEU* 3.9 6.7 - - - -
113C SER* 5.6 0.2 - - - -
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Residues in contact with TYR 79 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11B GLU* 3.3 31.1 + - - -
61C SER* 3.7 16.8 - - - +
62C ASN* 4.5 9.6 - - - +
67C GLY* 4.5 2.2 - - - -
68C CYS* 3.5 9.3 - - - -
77C ASN 5.9 0.2 - - - -
78C SER* 1.3 81.8 - - - +
80C CYS* 1.3 74.7 + - - +
81C THR* 3.9 18.8 + - - -
111C VAL* 3.0 38.4 + - + +
113C SER* 6.1 2.2 - - - -
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Residues in contact with CYS 80 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15C CYS* 2.0 52.0 - - - -
58C CYS* 3.8 4.3 - - - +
60C ALA 3.8 14.1 - - - +
61C SER* 3.0 21.7 + - - +
63C PRO* 3.7 24.2 - - - -
68C CYS* 4.0 5.8 - - - -
79C TYR* 1.3 83.1 - - - +
81C THR* 1.3 62.7 + - - +
108C CYS* 3.5 14.1 - - - -
109C VAL 3.3 3.4 - - - -
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Residues in contact with THR 81 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C CYS* 3.2 7.0 - - - -
79C TYR* 3.9 17.9 + - + +
80C CYS* 1.3 78.3 - - - +
82C THR* 1.3 70.2 + - - +
83C THR* 5.5 0.9 - - - +
108C CYS* 3.1 2.1 - - - -
109C VAL* 2.6 60.2 + - + +
111C VAL* 4.4 17.3 - - + -
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Residues in contact with THR 82 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56C THR 4.0 0.4 - - - +
57C LYS* 3.8 8.6 - - + +
58C CYS* 3.4 23.8 + - - +
81C THR* 1.3 86.9 + - - +
83C THR* 1.3 65.5 + - - +
84C HIS* 4.0 14.3 + - - +
105C ASP* 3.4 44.1 + - + +
107C ALA 3.0 11.0 - - - +
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Residues in contact with THR 83 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106B THR 4.6 1.8 - - - +
107B ALA* 4.4 10.5 - - + -
81C THR* 5.5 0.7 - - - +
82C THR* 1.3 74.1 - - - +
84C HIS* 1.3 59.8 + - - +
105C ASP* 3.5 3.1 - - - -
106C THR* 2.6 56.9 + - + -
107C ALA* 2.7 22.0 + - + -
109C VAL* 4.1 20.2 - - + +
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Residues in contact with HIS 84 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54B PHE* 4.4 9.4 - - - -
56B THR* 5.7 0.3 + - - -
106B THR 5.4 0.9 - - - +
82C THR* 4.0 18.5 + - + +
83C THR* 1.3 77.0 - - - +
85C THR* 1.3 60.9 + - - +
86C PHE* 5.4 5.4 - - + -
103C ARG* 3.2 57.1 + - + +
104C ILE* 3.2 15.7 - - - +
105C ASP* 2.9 13.9 + - - -
106C THR* 3.9 8.4 - - - +
900C ZN 2.1 36.3 - - - -
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Residues in contact with THR 85 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54B PHE* 3.6 27.7 + - - -
85B THR* 4.9 7.1 + - + +
87B VAL* 6.0 3.7 - - + +
106B THR* 4.1 8.1 + - - -
84C HIS* 1.3 75.3 - - - +
86C PHE* 1.3 75.3 + - - +
87C VAL* 4.4 10.4 - - + +
103C ARG* 3.5 4.9 - - - -
104C ILE* 3.1 47.1 + - + -
106C THR* 3.3 24.5 - - - +
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Residues in contact with PHE 86 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21B TRP* 4.1 18.2 - + + -
54B PHE* 3.8 43.9 + + + +
30C ASP 4.8 0.2 - - - -
31C ILE* 3.9 44.0 - - + -
84C HIS* 5.4 3.6 - - + -
85C THR* 1.3 83.9 + - - +
87C VAL* 1.3 67.8 - - - +
101C PHE* 4.1 13.1 - - + -
102C ILE 3.1 15.0 - - - -
103C ARG* 4.0 32.5 - - + -
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Residues in contact with VAL 87 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86B PHE 5.6 0.7 - - - +
87B VAL* 4.3 31.4 - - + -
53C PHE* 3.8 26.7 - - + -
85C THR* 4.4 7.2 - - + -
86C PHE* 1.3 80.9 - - - +
88C LYS* 1.3 76.7 + - - +
101C PHE* 3.1 6.6 - - - -
102C ILE* 2.6 42.0 + - + +
104C ILE* 3.9 24.5 - - + -
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Residues in contact with LYS 88 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49B PHE* 6.2 7.1 - - - +
50B ARG 6.0 2.2 - - - -
87B VAL* 6.1 1.4 - - - +
53C PHE* 4.2 2.8 - - - -
87C VAL* 1.3 89.3 - - - +
89C ALA* 1.3 61.7 + - - +
99C TRP* 4.2 39.6 + - + +
100C ARG* 3.3 8.9 - - - +
101C PHE* 3.5 44.1 - - + -
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Residues in contact with ALA 89 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38C VAL* 4.7 1.3 - - + -
51C GLN* 3.6 12.8 - - - +
53C PHE* 3.7 20.4 - - + -
88C LYS* 1.3 80.4 - - - +
90C LEU* 1.3 64.8 + - - +
91C THR* 3.1 13.6 - - + +
99C TRP* 3.3 10.0 - - - -
100C ARG 2.8 28.4 + - - +
102C ILE* 3.9 18.4 - - + -
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Residues in contact with LEU 90 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38C VAL* 4.1 0.7 - - - +
39C LEU* 3.4 24.9 + - + +
41C GLU 5.6 1.3 - - - +
42C VAL* 3.4 35.9 - - + -
43C ASN 4.0 11.2 - - - +
44C ILE* 5.6 0.2 - - + -
51C GLN* 3.0 29.7 + - - +
89C ALA* 1.3 68.9 - - - +
91C THR* 1.3 76.2 + - - +
97C ALA* 4.5 8.7 - - + -
98C ALA* 3.7 26.7 - - - +
99C TRP* 3.2 32.3 - - + +
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Residues in contact with THR 91 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36C VAL* 3.4 28.0 - - + -
37C THR 3.4 8.7 - - - +
38C VAL* 4.6 6.1 - - + -
39C LEU* 4.3 2.0 - - - -
89C ALA* 3.1 21.1 - - + +
90C LEU* 1.3 78.8 - - - +
92C THR* 1.3 63.9 + - - +
97C ALA* 3.2 2.3 - - - -
98C ALA 2.5 43.6 + - - -
100C ARG* 2.3 38.4 + - + +
102C ILE* 4.0 17.0 - - + -
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Residues in contact with THR 92 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36C VAL* 4.4 2.2 - - - -
37C THR* 3.2 33.7 + - - +
39C LEU* 3.3 30.3 - - + +
91C THR* 1.3 76.9 - - - +
93C ASP* 1.3 70.1 + - - +
94C GLU* 3.9 0.6 + - - -
96C GLN 3.5 3.8 - - - -
97C ALA* 3.2 33.0 - - + +
100C ARG* 3.9 2.0 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il