Contacts of the helix formed by residues 79 - 136 (chain A) in PDB entry 1CUN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 79 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A THR 4.0 0.2 - - - -
78A ILE* 1.3 77.6 - - - +
80A LYS* 1.3 64.8 + - - +
81A GLU 3.2 3.1 - - - -
82A GLU* 3.0 24.1 + - - +
83A ILE* 3.0 19.6 + - - +
163B VAL* 3.8 23.3 - - - +
167B ARG* 5.5 1.6 - - - -
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Residues in contact with LYS 80 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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73A SER* 3.1 42.1 + - - +
74A ASP* 5.3 0.4 - - - +
76A ASN* 2.6 39.7 - - - +
77A THR* 3.0 16.9 + - - +
79A GLY* 1.3 75.8 - - - +
81A GLU* 1.3 59.5 + - - +
83A ILE* 3.3 10.6 + - - +
84A GLN* 2.9 50.3 + - - +
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Residues in contact with GLU 81 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A GLY 3.2 1.0 - - - -
80A LYS* 1.3 77.0 - - - +
82A GLU* 1.3 65.4 + - - +
84A GLN* 3.3 20.6 + - - +
85A GLN* 3.0 60.6 + - - +
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Residues in contact with GLU 82 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12A PHE* 4.2 15.4 - - + -
79A GLY* 3.0 12.2 + - - +
81A GLU* 1.3 79.1 - - - +
83A ILE* 1.3 63.9 + - - +
85A GLN* 3.5 9.3 + - - +
86A ARG* 3.0 38.6 + - + +
163B VAL* 4.9 6.9 - - - +
167B ARG* 3.3 25.4 + - - -
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Residues in contact with ILE 83 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8A VAL* 4.5 8.5 - - + -
11A PHE* 4.3 14.7 - - + -
12A PHE* 3.8 23.3 - - + -
69A GLY 4.2 18.8 - - - +
72A LEU* 4.2 28.3 - - + -
73A SER* 5.0 4.5 - - - +
77A THR* 4.3 19.1 - - + -
78A ILE 5.0 0.7 - - - +
79A GLY* 3.0 21.4 + - - +
80A LYS* 3.5 10.5 - - - +
82A GLU* 1.3 77.8 - - + +
84A GLN* 1.3 60.1 + - + +
86A ARG* 3.2 6.3 + - - +
87A LEU* 2.9 36.7 + - + +
167B ARG* 5.2 2.2 - - - +
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Residues in contact with GLN 84 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A SER* 2.7 33.5 + - - +
80A LYS* 2.9 39.1 + - - +
81A GLU* 3.3 23.0 + - - +
83A ILE* 1.3 76.7 - - + +
85A GLN* 1.3 61.2 + - - +
87A LEU* 3.3 9.9 + - + +
88A ALA* 3.0 24.3 + - - +
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Residues in contact with GLN 85 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81A GLU* 3.0 41.9 + - - +
82A GLU* 3.9 7.6 - - - +
84A GLN* 1.3 75.5 - - - +
86A ARG* 1.3 64.2 + - + +
88A ALA* 3.3 6.4 + - - +
89A GLN* 3.0 23.2 + - - +
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Residues in contact with ARG 86 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12A PHE* 3.7 21.4 - - + -
15A MET* 3.2 44.6 - - + +
16A ASP* 2.8 30.3 + - - -
19A GLU* 3.1 22.7 + - - +
82A GLU* 3.0 35.0 + - + +
83A ILE 3.6 4.0 - - - +
85A GLN* 1.3 78.5 - - + +
87A LEU* 1.3 57.4 + - - +
89A GLN* 3.2 20.0 + - - +
90A PHE* 2.8 29.6 + - - +
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Residues in contact with LEU 87 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A PHE* 4.0 21.8 - - + -
15A MET* 4.8 1.6 - - - -
65A VAL* 4.0 16.2 - - + +
66A LEU* 4.0 27.4 - - + +
69A GLY* 3.5 31.6 - - - +
70A LYS* 4.2 2.7 - - - +
73A SER* 5.5 3.1 - - - -
83A ILE* 2.9 24.6 + - + +
84A GLN* 3.6 9.2 - - + +
86A ARG* 1.3 77.6 - - - +
88A ALA* 1.3 56.9 + - - +
90A PHE* 3.4 6.3 - - + +
91A VAL* 2.9 34.8 + - + +
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Residues in contact with ALA 88 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84A GLN 3.0 17.0 + - - +
85A GLN* 3.8 6.5 - - - +
87A LEU* 1.3 73.4 - - - +
89A GLN* 1.3 65.9 + - - +
91A VAL* 4.0 6.0 - - - +
92A ASP* 3.1 23.4 + - - +
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Residues in contact with GLN 89 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19A GLU* 4.2 4.6 - - - +
85A GLN 3.0 17.4 + - - +
86A ARG* 3.7 24.0 + - - +
88A ALA* 1.3 76.3 - - - +
90A PHE* 1.3 58.3 + - - +
92A ASP* 3.2 7.6 + - + +
93A HIS* 2.9 56.0 + - + +
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Residues in contact with PHE 90 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A MET* 4.1 13.9 - - + -
18A GLU* 3.8 20.6 - - + -
19A GLU* 3.3 37.7 + - + +
22A ILE* 4.0 12.6 - - + -
62A ILE* 3.8 39.0 - - + -
65A VAL* 3.6 36.3 - - + -
66A LEU* 3.8 21.1 - - + -
86A ARG 2.8 16.9 + - - +
87A LEU* 3.4 7.2 - - + +
88A ALA 3.3 0.2 - - - -
89A GLN* 1.3 74.4 - - - +
91A VAL* 1.3 65.5 + - - +
93A HIS* 3.2 5.1 + - - +
94A TRP* 3.0 20.8 + - + +
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Residues in contact with VAL 91 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66A LEU* 3.5 33.7 - - + -
87A LEU* 2.9 21.5 + - + +
88A ALA* 4.0 7.0 - - - +
90A PHE* 1.3 76.8 - - - +
92A ASP* 1.3 58.6 + - - +
94A TRP* 3.3 9.8 + - + +
95A LYS* 2.8 59.5 + - + +
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Residues in contact with ASP 92 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88A ALA 3.1 20.7 + - - +
89A GLN* 3.3 9.2 - - + +
90A PHE 3.1 0.2 - - - -
91A VAL* 1.3 76.9 - - - +
93A HIS* 1.3 64.8 + - - +
95A LYS* 3.5 7.4 + - - +
96A GLU* 2.9 34.1 + - - +
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Residues in contact with HIS 93 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19A GLU* 3.1 29.4 + - + +
22A ILE* 3.7 25.1 - - + +
26A LYS* 6.0 2.4 - - + +
89A GLN* 2.9 44.8 + - + +
90A PHE* 3.2 6.5 + - - +
92A ASP* 1.3 80.8 - - - +
94A TRP* 1.3 59.1 + - - +
96A GLU* 3.6 19.0 - - - +
97A LEU* 3.0 27.4 + - - +
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Residues in contact with TRP 94 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21A TRP* 3.8 24.0 - + - -
22A ILE* 4.1 20.1 - - + +
55A LEU* 3.7 28.7 - - + -
59A GLU* 3.7 32.9 - - + +
62A ILE* 4.0 38.3 - - + +
66A LEU* 5.7 6.1 - - + -
90A PHE 3.0 13.1 + - - +
91A VAL* 3.5 12.3 - - + +
93A HIS* 1.3 74.3 - - - +
95A LYS* 1.3 68.4 + - + +
97A LEU* 3.2 22.3 + - + +
98A LYS* 3.0 63.2 + - + +
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Residues in contact with LYS 95 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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91A VAL* 2.8 44.7 + - + +
92A ASP* 3.9 7.0 - - - +
94A TRP* 1.3 75.1 - - + +
96A GLU* 1.3 58.0 + - - +
98A LYS* 3.2 23.0 + - - +
99A GLN* 2.9 30.8 + - - +
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Residues in contact with GLU 96 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26A LYS* 3.1 37.1 - - - +
92A ASP* 2.9 23.8 + - - +
93A HIS* 3.6 19.3 - - - +
95A LYS* 1.3 78.1 - - - +
97A LEU* 1.3 62.0 + - - +
99A GLN* 3.2 14.8 + - - +
100A LEU* 2.9 41.0 + - + +
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Residues in contact with LEU 97 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21A TRP* 4.1 7.9 - - + -
22A ILE* 4.2 15.7 - - + +
25A LYS* 3.8 18.4 - - + +
26A LYS* 3.7 34.1 - - + +
29A VAL* 4.5 11.9 - - + -
55A LEU* 3.7 29.8 - - + -
93A HIS 3.0 14.9 + - - +
94A TRP* 3.2 28.5 + - + +
96A GLU* 1.3 74.6 + - - +
98A LYS* 1.3 59.6 + - - +
100A LEU* 3.2 9.6 + - + +
101A ALA* 2.8 27.2 + - - +
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Residues in contact with LYS 98 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55A LEU* 4.7 9.6 - - + -
59A GLU* 4.6 7.5 + - - +
94A TRP* 3.0 70.1 + - + +
95A LYS* 3.6 22.2 - - - +
97A LEU* 1.3 77.2 - - - +
99A GLN* 1.3 57.2 + - - +
101A ALA* 3.5 5.8 + - - +
102A ALA* 3.0 29.6 + - - +
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Residues in contact with GLN 99 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95A LYS 2.9 16.9 + - - +
96A GLU* 3.6 13.6 - - - +
98A LYS* 1.3 72.7 - - - +
100A LEU* 1.3 92.2 + - - +
102A ALA* 3.3 6.4 + - - +
103A ALA* 2.9 37.7 + - - +
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Residues in contact with LEU 100 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A LYS* 4.1 23.3 - - + +
29A VAL* 3.2 23.0 - - + +
30A SER* 5.2 7.4 - - - +
96A GLU* 2.9 47.3 + - + +
97A LEU* 3.6 5.6 - - + +
99A GLN* 1.3 108.3 - - - +
101A ALA* 1.3 57.6 + - - +
103A ALA* 3.1 5.2 + - + +
104A ARG* 2.9 26.7 + - - +
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Residues in contact with ALA 101 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A VAL* 3.2 23.7 - - + +
48A HIS* 3.0 27.6 + - + +
51A LEU* 4.3 7.0 - - + -
52A GLU* 4.3 4.9 - - + +
55A LEU* 3.9 24.9 - - + -
97A LEU* 2.8 17.6 + - + +
98A LYS 3.8 4.0 - - - +
100A LEU* 1.3 76.2 - - - +
102A ALA* 1.3 63.0 + - - +
105A GLY* 3.0 7.1 + - - -
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Residues in contact with ALA 102 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52A GLU* 5.0 5.4 - - - -
98A LYS 3.0 17.6 + - - +
99A GLN* 3.7 6.5 - - - +
101A ALA* 1.3 75.6 - - - +
103A ALA* 1.3 63.8 + - - +
105A GLY* 3.2 3.0 + - - -
106A GLN* 3.0 27.3 + - - +
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Residues in contact with ALA 103 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99A GLN* 2.9 27.1 + - - +
100A LEU* 3.4 9.9 - - + +
102A ALA* 1.3 76.0 - - - +
104A ARG* 1.3 63.3 + - - +
106A GLN* 3.0 9.0 + - - +
107A ARG* 2.9 25.6 + - - +
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Residues in contact with ARG 104 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A LEU 4.6 3.0 + - - -
29A VAL* 3.6 37.2 - - + +
31A SER* 3.0 37.2 + - - +
33A ASP* 3.0 28.3 + - - +
34A TYR* 3.4 17.3 - - + +
44A LEU* 4.2 19.6 + - - +
47A LYS* 6.2 0.8 - - - +
48A HIS* 4.0 18.2 + - + +
100A LEU 2.9 18.1 + - - +
103A ALA* 1.3 72.6 - - - +
105A GLY* 1.3 64.9 + - - +
107A ARG* 3.1 7.4 + - - +
108A LEU* 2.9 43.6 + - + +
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Residues in contact with GLY 105 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45A ARG* 5.1 0.3 + - - -
48A HIS* 3.5 26.8 + - - -
52A GLU* 4.9 2.5 - - - -
101A ALA 3.0 12.1 + - - -
102A ALA 3.2 4.5 + - - -
103A ALA 3.2 0.2 - - - -
104A ARG* 1.3 75.7 - - - +
106A GLN* 1.3 62.4 + - - +
108A LEU* 3.5 6.1 + - - +
109A GLU* 2.8 33.6 + - - +
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Residues in contact with GLN 106 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A ALA* 3.0 13.6 + - - +
103A ALA* 3.0 12.6 + - - +
105A GLY* 1.3 77.0 - - - +
107A ARG* 1.3 66.3 + - - +
108A LEU 3.1 0.2 - - - -
109A GLU* 3.1 25.6 + - - +
110A GLU* 3.1 21.5 + - - +
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Residues in contact with ARG 107 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34A TYR* 3.7 53.8 - - + +
103A ALA 2.9 14.0 + - - +
104A ARG* 3.1 6.7 + - - +
106A GLN* 1.3 76.7 - - - +
108A LEU* 1.3 57.0 + - - +
110A GLU* 3.1 43.4 + - - +
111A SER* 2.9 38.8 + - - +
114A TYR* 6.0 0.6 - - - +
184A HIS* 4.0 21.0 + - - +
185A HIS* 5.4 9.9 + - - -
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Residues in contact with LEU 108 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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33A ASP 4.1 3.4 - - - +
34A TYR* 3.8 36.3 - - + +
41A VAL* 3.6 11.1 - - + +
44A LEU* 4.0 28.7 - - + +
45A ARG* 3.9 15.1 - - + -
48A HIS* 3.8 34.1 - - + -
104A ARG* 2.9 38.3 + - + +
105A GLY* 3.7 5.4 - - - +
107A ARG* 1.3 75.3 - - - +
109A GLU* 1.3 61.4 + - - +
111A SER* 4.2 1.8 - - - -
112A LEU* 2.9 28.2 + - - +
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Residues in contact with GLU 109 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45A ARG* 3.7 30.6 + - - +
105A GLY* 2.8 28.5 + - - +
106A GLN* 3.1 30.5 + - - +
108A LEU* 1.3 74.2 - - - +
110A GLU* 1.3 66.4 + - - +
112A LEU* 3.3 10.6 + - + +
113A GLU* 3.1 29.2 + - + +
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Residues in contact with GLU 110 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106A GLN 3.1 11.3 + - - +
107A ARG* 3.1 30.1 + - - +
109A GLU* 1.3 76.7 - - - +
111A SER* 1.3 62.7 + - - +
113A GLU* 3.2 14.5 + - - +
114A TYR* 3.0 23.1 + - + +
178A LEU* 5.2 0.2 - - - +
181A LYS* 3.1 33.7 + - - +
182A ASN* 2.9 16.0 - - - +
184A HIS* 2.4 39.7 + - - +
185A HIS* 5.5 0.3 - - - -
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Residues in contact with SER 111 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A TYR* 2.8 41.2 + - - +
35A GLY 4.7 1.2 + - - -
41A VAL* 3.1 10.3 - - - +
107A ARG* 2.9 26.0 + - - +
108A LEU* 3.6 7.4 - - - -
109A GLU 3.3 0.2 - - - -
110A GLU* 1.3 77.9 - - - +
112A LEU* 1.3 56.0 + - - +
114A TYR* 3.3 7.7 + - - +
115A GLN* 2.9 34.8 + - - +
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Residues in contact with LEU 112 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A LEU* 3.7 25.6 - - + -
41A VAL* 3.7 16.5 - - + +
42A GLN* 4.0 15.7 - - + +
45A ARG* 4.0 30.5 - - - +
108A LEU 2.9 17.2 + - - +
109A GLU* 3.5 9.6 - - + +
110A GLU 3.2 0.2 - - - -
111A SER* 1.3 73.7 - - - +
113A GLU* 1.3 63.3 + - + +
115A GLN* 3.4 1.9 + - - +
116A GLN* 2.9 55.4 + - - +
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Residues in contact with GLU 113 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A GLU* 3.1 15.7 + - - +
110A GLU* 3.2 9.2 + - - +
112A LEU* 1.3 78.6 - - + +
114A TYR* 1.3 63.5 + - - +
116A GLN* 3.4 9.8 + - - +
117A PHE* 3.1 21.8 + - - +
174A ASN* 4.4 7.8 + - - +
178A LEU* 3.7 29.2 - - + +
181A LYS* 4.0 15.1 - - - +
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Residues in contact with TYR 114 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A ARG* 6.0 0.4 - - - +
110A GLU* 3.0 15.9 + - + +
111A SER* 3.6 10.5 - - - +
112A LEU 3.2 0.2 - - - -
113A GLU* 1.3 79.0 - - - +
115A GLN* 1.3 79.4 + - + +
117A PHE* 3.3 5.7 + + - +
118A VAL* 3.0 45.7 + - + +
178A LEU* 4.0 13.0 - - + +
181A LYS* 6.3 0.2 - - - +
185A HIS* 3.5 58.3 + + + +
188A ASN* 2.9 26.0 + - - -
189A ILE* 3.6 30.1 - - + -
192A LYS* 5.9 0.2 - - + -
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Residues in contact with GLN 115 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A GLY 4.1 5.9 - - - +
36A ARG 3.7 12.9 + - - +
37A ASP* 3.4 25.7 - - - +
38A LEU* 3.6 23.8 + - + +
41A VAL* 3.5 22.2 - - + -
111A SER* 2.9 26.0 + - - +
112A LEU 4.1 2.7 - - - +
114A TYR* 1.3 90.3 - - + +
116A GLN* 1.3 60.8 + - - +
118A VAL* 3.8 20.8 - - - +
119A ALA* 2.9 29.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 116 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A LEU* 4.2 14.3 - - + +
42A GLN* 5.6 0.4 + - - -
112A LEU* 2.9 49.6 + - - +
113A GLU* 3.6 8.4 - - - +
114A TYR 3.2 0.2 - - - -
115A GLN* 1.3 76.6 - - - +
117A PHE* 1.3 52.0 + - - +
119A ALA* 3.2 2.0 + - - +
120A ASN* 2.7 46.5 + - - +
174A ASN* 5.6 1.3 - - - +
10C GLN* 3.3 47.2 + - - +
13C ARG* 4.1 7.1 + - - +
----------------------------------------------------------
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Residues in contact with PHE 117 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113A GLU 3.1 10.7 + - - +
114A TYR* 3.5 11.0 - + - +
116A GLN* 1.3 75.8 - - - +
118A VAL* 1.3 70.5 + - + +
120A ASN* 3.2 6.7 + - - +
121A VAL* 2.9 44.6 + - + +
171A VAL* 3.5 41.1 - - + -
174A ASN* 3.5 19.0 + - - +
175A GLY* 3.7 17.3 - - - -
178A LEU* 3.8 8.7 - - + -
189A ILE* 3.9 36.1 - - + -
192A LYS* 4.2 15.9 - - + -
193A MET* 3.9 24.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL 118 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114A TYR* 3.0 56.1 + - + +
115A GLN* 3.8 19.1 - - - +
116A GLN 3.3 0.2 - - - -
117A PHE* 1.3 81.8 - - + +
119A ALA* 1.3 62.5 + - - +
121A VAL* 3.4 3.1 + - - +
122A GLU* 3.2 21.5 + - + +
188A ASN* 5.0 0.7 - - - +
192A LYS* 4.3 26.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA 119 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A LEU* 4.2 24.0 - - + -
115A GLN 2.9 19.1 + - - +
116A GLN 3.5 4.3 - - - +
118A VAL* 1.3 78.0 - - - +
120A ASN* 1.3 63.3 + - - +
122A GLU* 3.3 7.6 + - - +
123A GLU* 3.0 30.1 + - + +
13C ARG* 4.2 9.6 - - - +
----------------------------------------------------------
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Residues in contact with ASN 120 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116A GLN* 2.7 29.3 + - - +
117A PHE* 3.2 8.2 + - - +
119A ALA* 1.3 72.5 - - - +
121A VAL* 1.3 62.6 + - - +
123A GLU* 3.3 4.4 + - - +
124A GLU* 3.1 28.1 + - - +
171A VAL* 3.8 22.7 - - + +
174A ASN* 4.9 4.9 - - - +
7C MET 5.8 1.6 + - - -
9C HIS* 3.0 33.7 - - + +
13C ARG* 2.9 37.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 121 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117A PHE* 2.9 42.8 + - + +
118A VAL 3.7 4.5 - - - +
120A ASN* 1.3 75.7 - - - +
122A GLU* 1.3 59.7 + - - +
124A GLU* 3.4 1.2 + - - +
125A GLU* 2.9 52.1 + - + +
171A VAL* 3.7 19.1 - - + -
192A LYS* 4.1 32.5 - - + +
196A LEU* 4.2 16.8 - - + -
----------------------------------------------------------
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Residues in contact with GLU 122 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A VAL* 3.2 12.1 + - + +
119A ALA* 3.7 9.6 - - - +
120A ASN 3.2 0.2 - - - -
121A VAL* 1.3 82.6 - - - +
123A GLU* 1.3 57.4 + - + +
125A GLU* 4.6 10.4 - - - +
126A ALA* 2.9 42.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 123 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A ALA* 3.0 17.8 + - - +
120A ASN* 3.7 8.1 - - - +
121A VAL 3.3 0.2 - - - -
122A GLU* 1.3 78.2 - - + +
124A GLU* 1.3 63.5 + - - +
126A ALA* 3.6 4.8 + - - +
127A TRP* 3.3 21.7 + - - +
164A HIS* 5.8 0.3 - - - -
9C HIS* 3.4 26.8 + - + +
13C ARG* 2.9 41.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 124 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A ASN 3.1 16.7 + - - +
121A VAL 4.0 0.2 - - - +
123A GLU* 1.3 75.2 - - - +
125A GLU* 1.3 67.0 + - - +
127A TRP* 3.2 4.5 + - - +
128A ILE* 3.0 30.1 + - + +
164A HIS* 2.8 38.7 + - - +
167A ARG* 3.5 22.6 + - - +
168A VAL* 4.1 15.4 - - + +
171A VAL* 4.5 7.9 - - + -
196A LEU* 3.9 19.3 - - + -
9C HIS* 2.8 32.3 + - + +
----------------------------------------------------------
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Residues in contact with GLU 125 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A VAL* 2.9 34.5 + - - +
122A GLU* 4.0 12.1 - - - +
124A GLU* 1.3 77.9 - - - +
126A ALA* 1.3 57.0 + - - +
128A ILE* 3.3 5.6 + - - +
129A ASN* 2.8 41.3 + - - +
192A LYS* 4.6 1.7 + - - +
195A GLY* 3.9 3.1 - - - -
196A LEU* 3.5 36.9 + - + +
199A LYS* 3.5 28.1 + - + +
----------------------------------------------------------
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Residues in contact with ALA 126 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A GLU* 2.9 31.8 + - + +
123A GLU* 4.0 5.4 - - - +
125A GLU* 1.3 77.1 - - - +
127A TRP* 1.3 64.0 + - - +
129A ASN* 3.4 9.3 + - - +
130A GLU* 3.1 29.2 + - - +
----------------------------------------------------------
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Residues in contact with TRP 127 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123A GLU 3.3 11.1 + - - +
124A GLU 3.2 8.0 + - - +
126A ALA* 1.3 80.9 - - - +
128A ILE* 1.3 74.7 + - + +
130A GLU* 3.0 36.9 + - - +
131A LYS* 3.1 48.7 + - + +
157A PHE* 3.9 9.6 - + - -
160A ASP* 4.2 14.7 - - + +
161A PHE* 3.7 42.4 - + - -
164A HIS* 3.3 52.9 + + + +
203A LEU* 4.1 8.7 - - + -
----------------------------------------------------------
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Residues in contact with ILE 128 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124A GLU* 3.0 23.1 + - + +
125A GLU* 3.7 5.2 - - - +
127A TRP* 1.3 94.5 - - + +
129A ASN* 1.3 58.2 + - - +
131A LYS* 3.1 2.1 + - - +
132A MET* 2.8 40.8 + - + +
161A PHE* 5.3 2.0 - - + -
164A HIS* 6.0 1.3 - - + -
168A VAL* 4.6 4.7 - - + -
196A LEU* 4.2 14.8 - - + -
199A LYS* 3.8 42.8 - - + +
200A VAL* 3.8 31.2 - - + +
203A LEU* 4.3 13.1 - - + +
----------------------------------------------------------
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Residues in contact with ASN 129 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125A GLU* 2.8 36.8 + - - +
126A ALA* 3.7 7.9 - - - +
127A TRP 3.3 0.2 - - - -
128A ILE* 1.3 75.4 - - - +
130A GLU* 1.3 61.3 + - - +
132A MET* 3.4 15.1 + - - +
133A THR* 3.5 16.3 + - - -
199A LYS* 2.9 33.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 130 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126A ALA* 3.1 19.0 + - - +
127A TRP* 3.0 35.7 - - - +
129A ASN* 1.3 77.0 - - - +
131A LYS* 1.3 82.2 + - + +
133A THR* 3.5 8.4 + - - -
134A LEU* 3.3 19.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 131 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127A TRP* 3.1 58.9 + - + +
128A ILE 3.8 3.1 - - - +
130A GLU* 1.3 90.7 + - + +
132A MET* 1.3 57.6 + - - +
134A LEU* 3.4 25.5 - - + +
135A VAL* 2.8 37.6 + - - +
157A PHE* 3.8 28.6 - - + +
160A ASP* 5.9 2.8 + - - -
203A LEU* 4.1 10.1 - - + -
----------------------------------------------------------
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Residues in contact with MET 132 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A ILE* 2.8 31.1 + - + +
129A ASN* 3.7 9.6 - - - +
130A GLU 3.3 0.2 - - - -
131A LYS* 1.3 75.5 - - - +
133A THR* 1.3 57.6 + - - +
135A VAL* 3.5 2.0 + - - +
136A ALA* 3.0 30.1 + - - +
199A LYS* 5.4 1.8 - - - +
202A ASP* 3.9 27.4 - - + +
203A LEU* 3.6 35.8 - - + +
206A ALA* 4.0 13.6 - - + +
----------------------------------------------------------
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Residues in contact with THR 133 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129A ASN 3.5 10.4 + - - -
130A GLU* 3.5 10.3 + - - -
131A LYS 3.2 0.2 - - - -
132A MET* 1.3 77.1 - - - +
134A LEU* 1.3 68.2 + - - +
136A ALA* 3.3 14.3 + - - +
137A SER* 3.7 7.1 + - - -
----------------------------------------------------------
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Residues in contact with LEU 134 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130A GLU 3.3 10.5 + - - +
131A LYS* 3.2 35.1 + - + +
133A THR* 1.3 80.0 - - - +
135A VAL* 1.3 67.3 + - + +
137A SER* 3.1 27.8 + - - -
157A PHE* 5.7 8.1 - - + -
210A ARG* 4.7 2.8 + - - -
----------------------------------------------------------
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Residues in contact with VAL 135 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131A LYS 2.8 21.9 + - - +
132A MET 3.8 3.1 - - - +
134A LEU* 1.3 76.8 - - + +
136A ALA* 1.3 57.2 + - - +
137A SER 3.2 2.4 - - - +
140A TYR* 5.7 0.3 + - - -
154A HIS* 5.0 3.8 - - + +
157A PHE* 4.0 37.9 - - + -
203A LEU* 4.3 5.8 - - + -
206A ALA* 3.4 43.3 - - + +
207A ALA* 3.6 7.9 - - + +
210A ARG* 3.3 33.0 - - + +
----------------------------------------------------------
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Residues in contact with ALA 136 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132A MET 3.0 18.1 + - - +
133A THR* 3.8 9.4 - - + +
134A LEU 3.1 1.2 - - - -
135A VAL* 1.3 75.5 - - - +
137A SER* 1.3 67.7 + - - +
138A GLU* 3.4 6.6 + - - +
140A TYR* 5.3 0.8 + - - -
206A ALA* 6.1 2.9 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il