Contacts of the helix formed by residues 79 - 136 (chain B) in PDB entry 1CUN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 79 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77B THR 3.4 0.2 + - - -
78B ILE* 1.3 78.2 - - - +
80B LYS* 1.3 65.7 + - - +
81B GLU* 3.2 3.4 - - - -
82B GLU* 3.1 22.9 + - - +
83B ILE* 3.1 19.1 + - - +
163C VAL* 3.9 23.6 - - - -
167C ARG* 5.8 1.1 + - - -
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Residues in contact with LYS 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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72B LEU 5.9 0.2 - - - -
73B SER* 2.8 38.1 + - - +
74B ASP* 4.9 1.6 + - - +
76B ASN* 3.9 28.1 - - - +
77B THR 3.4 15.9 + - - +
79B GLY* 1.3 77.4 - - - +
81B GLU* 1.3 59.5 + - + +
83B ILE* 3.3 11.0 + - - +
84B GLN* 2.9 61.0 + - - +
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Residues in contact with GLU 81 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79B GLY 3.2 1.0 - - - -
80B LYS* 1.3 77.1 - - + +
82B GLU* 1.3 62.7 + - - +
84B GLN* 3.3 27.2 + - - +
85B GLN* 3.0 57.9 + - - +
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Residues in contact with GLU 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12B PHE* 4.1 18.7 - - + -
79B GLY* 3.1 12.6 + - - +
81B GLU* 1.3 78.7 - - - +
83B ILE* 1.3 58.5 + - - +
85B GLN* 3.4 7.9 + - - +
86B ARG* 2.9 45.4 + - + +
163C VAL* 4.9 6.6 - - - +
167C ARG* 3.5 21.5 + - - -
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Residues in contact with ILE 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8B VAL* 4.2 15.3 - - + -
11B PHE* 4.1 14.0 - - + -
12B PHE* 3.8 24.5 - - + -
69B GLY* 4.0 13.7 - - - +
72B LEU* 4.0 17.7 - - + -
73B SER* 4.8 6.7 - - - +
77B THR* 3.5 24.9 - - - +
78B ILE 5.2 1.1 - - - +
79B GLY 3.1 16.3 + - - +
80B LYS* 3.5 10.3 - - - +
81B GLU 3.2 0.2 - - - -
82B GLU* 1.3 77.9 - - - +
84B GLN* 1.3 57.4 + - - +
86B ARG* 3.4 2.5 + - - +
87B LEU* 3.0 46.0 + - + +
167C ARG* 6.0 0.7 - - - +
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Residues in contact with GLN 84 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73B SER* 3.0 30.6 + - - +
80B LYS* 2.9 48.1 + - - +
81B GLU* 3.3 23.3 + - - +
83B ILE* 1.3 79.2 - - + +
85B GLN* 1.3 61.1 + - + +
87B LEU* 3.4 9.5 + - + +
88B ALA* 3.1 24.8 + - - +
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Residues in contact with GLN 85 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81B GLU* 3.0 47.2 + - - +
82B GLU* 3.9 6.8 - - - +
84B GLN* 1.3 77.8 - - + +
86B ARG* 1.3 64.2 + - + +
88B ALA* 3.6 5.3 + - - +
89B GLN* 3.2 26.5 + - - +
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Residues in contact with ARG 86 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12B PHE* 3.8 26.7 - - + -
15B MET* 3.3 36.7 - - + +
16B ASP* 2.8 28.7 + - - -
19B GLU* 3.0 21.3 + - - +
82B GLU* 2.9 33.6 + - + +
83B ILE 3.9 2.9 - - - +
85B GLN* 1.3 77.9 - - + +
87B LEU* 1.3 56.9 + - - +
89B GLN* 3.4 29.3 + - - +
90B PHE* 2.9 28.6 + - - +
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Residues in contact with LEU 87 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11B PHE* 3.8 28.3 - - + -
15B MET* 4.5 5.4 - - - -
65B VAL* 4.3 2.2 - - + +
66B LEU* 4.1 28.9 - - + +
69B GLY* 3.7 33.7 - - - +
70B LYS* 4.3 2.5 - - - +
73B SER* 5.3 3.4 - - - -
83B ILE* 3.0 26.2 + - + +
84B GLN* 3.7 9.4 - - + +
85B GLN 3.3 0.2 - - - -
86B ARG* 1.3 74.3 - - - +
88B ALA* 1.3 54.5 + - - +
90B PHE* 3.0 5.0 + - + +
91B VAL* 2.8 41.9 + - + +
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Residues in contact with ALA 88 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84B GLN 3.1 15.1 + - - +
85B GLN* 3.9 6.3 - - - +
87B LEU* 1.3 78.3 - - - +
89B GLN* 1.3 61.9 + - - +
91B VAL* 3.9 7.8 - - - +
92B ASP* 3.1 32.6 + - - +
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Residues in contact with GLN 89 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19B GLU* 4.2 9.5 + - - +
85B GLN* 3.2 19.9 + - - +
86B ARG* 3.4 32.1 - - - +
88B ALA* 1.3 76.2 - - - +
90B PHE* 1.3 64.7 + - - +
92B ASP* 3.3 8.2 + - - +
93B HIS* 3.1 47.0 + - + -
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Residues in contact with PHE 90 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15B MET* 3.9 15.3 - - + -
18B GLU* 3.6 32.3 - - + -
19B GLU* 3.4 30.7 + - + +
22B ILE* 3.8 16.8 - - + -
62B ILE* 3.8 32.1 - - + -
65B VAL* 3.7 34.1 - - + -
66B LEU* 3.6 23.8 - - + -
86B ARG 2.9 15.2 + - - +
87B LEU* 3.4 8.3 - - + +
89B GLN* 1.3 76.5 - - - +
91B VAL* 1.3 61.6 + - - +
93B HIS* 3.2 5.6 + - + +
94B TRP* 3.1 20.3 + - + +
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Residues in contact with VAL 91 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66B LEU* 3.7 30.1 - - + -
87B LEU* 2.8 25.7 + - + +
88B ALA* 3.9 8.5 - - - +
90B PHE* 1.3 74.3 - - - +
92B ASP* 1.3 64.6 + - - +
94B TRP* 3.3 8.5 + - + +
95B LYS* 3.0 55.2 + - + +
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Residues in contact with ASP 92 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88B ALA* 3.1 24.3 + - - +
89B GLN* 3.7 6.8 - - - +
90B PHE 3.3 0.2 - - - -
91B VAL* 1.3 79.8 - - - +
93B HIS* 1.3 58.2 + - + +
95B LYS* 3.4 14.3 + - - +
96B GLU* 2.8 30.9 + - - +
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Residues in contact with HIS 93 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19B GLU* 3.1 32.2 + - + +
22B ILE* 3.7 21.3 - - + +
26B LYS* 6.1 2.2 - - + +
89B GLN* 3.1 33.6 + - + -
90B PHE* 3.2 6.9 + - - +
92B ASP* 1.3 75.4 - - + +
94B TRP* 1.3 61.2 + - - +
96B GLU* 3.3 19.8 + - - +
97B LEU* 2.9 29.5 + - - +
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Residues in contact with TRP 94 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21B TRP* 3.7 26.2 - + - -
22B ILE* 3.9 24.1 - - + +
55B LEU* 3.7 31.9 - - + -
58B HIS* 4.5 2.2 - - + -
59B GLU* 3.4 33.9 + - + -
62B ILE* 3.8 40.9 - - + +
66B LEU* 5.8 4.0 - - + -
90B PHE* 3.1 12.1 + - + +
91B VAL* 3.3 10.7 + - + +
93B HIS* 1.3 75.0 - - - +
95B LYS* 1.3 67.6 + - + +
97B LEU* 3.3 17.1 + - + +
98B LYS* 3.1 60.2 + - + +
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Residues in contact with LYS 95 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91B VAL* 3.0 42.9 + - + +
92B ASP* 3.7 13.2 - - - +
94B TRP* 1.3 78.0 - - + +
96B GLU* 1.3 67.0 + - - +
98B LYS* 3.2 14.7 + - - +
99B GLN* 2.9 37.4 + - + +
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Residues in contact with GLU 96 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26B LYS* 3.3 33.1 - - + +
92B ASP 2.8 18.5 + - - +
93B HIS* 3.6 21.9 - - - +
95B LYS* 1.3 76.7 - - - +
97B LEU* 1.3 57.3 + - - +
99B GLN* 3.3 11.8 + - - +
100B LEU* 2.9 44.2 + - + +
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Residues in contact with LEU 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21B TRP* 4.2 1.3 - - + -
22B ILE* 4.0 23.1 - - + +
25B LYS* 3.8 20.4 - - + +
26B LYS* 3.7 31.4 - - + +
29B VAL* 4.6 10.1 - - + -
51B LEU* 5.6 1.1 - - + -
55B LEU* 3.8 23.3 - - + -
93B HIS 2.9 17.6 + - - +
94B TRP* 3.6 30.7 - - + +
96B GLU* 1.3 78.1 - - - +
98B LYS* 1.3 59.5 + - - +
100B LEU* 3.2 6.4 + - - +
101B ALA* 2.9 27.5 + - + +
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Residues in contact with LYS 98 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55B LEU* 4.7 14.4 - - + -
59B GLU* 3.3 19.3 + - - -
94B TRP* 3.1 66.9 + - + +
95B LYS* 3.7 12.9 - - - +
97B LEU* 1.3 75.8 - - - +
99B GLN* 1.3 57.9 + - + +
101B ALA* 3.5 7.2 + - - +
102B ALA* 3.0 28.6 + - - +
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Residues in contact with GLN 99 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95B LYS* 2.9 29.2 + - + +
96B GLU* 3.8 11.0 - - - +
98B LYS* 1.3 74.3 - - + +
100B LEU* 1.3 62.2 + - + +
102B ALA* 3.4 6.2 + - - +
103B ALA* 3.0 28.9 + - - +
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Residues in contact with LEU 100 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26B LYS* 4.1 23.1 - - + +
29B VAL* 3.4 21.8 - - + +
30B SER* 5.0 7.4 - - - +
96B GLU* 2.9 48.7 + - + +
97B LEU* 3.6 3.6 - - - +
99B GLN* 1.3 74.7 - - + +
101B ALA* 1.3 60.1 + - - +
103B ALA* 3.4 7.7 + - + +
104B ARG* 3.0 29.5 + - - +
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Residues in contact with ALA 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29B VAL* 3.7 24.6 - - + +
48B HIS* 3.0 16.1 + - + +
51B LEU* 4.2 5.4 - - + -
52B GLU* 5.0 4.5 - - + -
55B LEU* 3.9 24.7 - - + -
97B LEU* 2.9 18.1 + - + +
98B LYS 3.8 4.3 - - - +
100B LEU* 1.3 73.8 - - - +
102B ALA* 1.3 60.0 + - - +
104B ARG 3.4 0.3 + - - -
105B GLY 2.9 23.2 + - - -
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Residues in contact with ALA 102 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52B GLU* 5.1 5.2 - - - -
98B LYS 3.0 18.3 + - - +
99B GLN* 3.8 7.0 - - - +
101B ALA* 1.3 76.5 - - - +
103B ALA* 1.3 57.8 + - - +
105B GLY* 3.1 3.1 + - - -
106B GLN* 2.9 31.2 + - - +
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Residues in contact with ALA 103 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99B GLN 3.0 18.3 + - - +
100B LEU* 3.6 11.7 - - + +
101B ALA 3.3 0.2 - - - -
102B ALA* 1.3 74.0 - - - +
104B ARG* 1.3 65.6 + - - +
106B GLN* 3.2 8.5 + - - +
107B ARG* 2.9 27.4 + - + +
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Residues in contact with ARG 104 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28B LEU 5.2 0.6 + - - -
29B VAL* 3.5 32.3 - - - +
31B SER* 3.1 36.9 + - - +
33B ASP 2.9 29.5 + - - -
34B TYR* 3.3 21.8 - - + +
44B LEU* 4.1 19.0 + - - +
48B HIS* 4.0 19.3 + - + +
100B LEU 3.0 17.4 + - - +
101B ALA* 3.9 3.8 - - - +
103B ALA* 1.3 75.0 - - - +
105B GLY* 1.3 64.2 + - - +
107B ARG* 3.3 8.0 + - - +
108B LEU* 2.9 45.8 + - + +
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Residues in contact with GLY 105 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45B ARG* 5.2 0.2 + - - -
48B HIS* 3.5 25.7 + - - -
52B GLU* 4.7 4.3 - - - -
101B ALA 2.9 10.9 + - - -
102B ALA 3.1 4.4 + - - -
104B ARG* 1.3 77.8 - - - +
106B GLN* 1.3 61.8 + - - +
108B LEU* 3.3 6.6 + - - +
109B GLU* 3.1 27.9 + - - +
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Residues in contact with GLN 106 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102B ALA 2.9 13.7 + - - +
103B ALA* 3.2 10.3 + - - +
105B GLY* 1.3 73.5 - - - +
107B ARG* 1.3 66.9 + - - +
109B GLU* 3.1 32.5 + - - +
110B GLU* 3.0 20.3 + - - +
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Residues in contact with ARG 107 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B TYR* 3.8 51.5 - - + +
103B ALA* 2.9 19.6 + - + +
104B ARG* 3.7 5.6 - - - +
106B GLN* 1.3 75.4 - - - +
108B LEU* 1.3 58.1 + - - +
110B GLU* 3.1 40.8 + - - +
111B SER* 2.8 40.3 + - - +
184B HIS* 3.6 18.5 + - - -
185B HIS* 5.7 5.3 + - - -
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Residues in contact with LEU 108 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B TYR* 3.9 32.3 - - + +
41B VAL* 3.6 12.3 - - + +
44B LEU* 4.0 30.5 - - + +
45B ARG* 4.0 14.6 - - + +
48B HIS* 3.7 35.9 - - + -
104B ARG* 2.9 41.7 + - + +
105B GLY* 3.5 5.6 - - - +
106B GLN 3.2 0.2 - - - -
107B ARG* 1.3 78.1 - - - +
109B GLU* 1.3 58.8 + - - +
111B SER* 3.3 4.3 + - - -
112B LEU* 2.9 24.3 + - - +
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Residues in contact with GLU 109 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45B ARG* 3.2 33.0 + - - +
105B GLY 3.1 18.3 + - - +
106B GLN* 3.1 35.2 + - - +
108B LEU* 1.3 72.0 - - - +
110B GLU* 1.3 66.4 + - - +
112B LEU* 3.3 9.6 + - + +
113B GLU* 3.1 34.2 + - - +
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Residues in contact with GLU 110 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B GLN 3.0 12.3 + - - +
107B ARG* 3.1 34.9 + - - +
109B GLU* 1.3 77.9 - - - +
111B SER* 1.3 61.7 + - - +
113B GLU* 3.3 11.4 + - - +
114B TYR* 3.1 23.8 + - + +
178B LEU* 5.1 0.7 - - - +
181B LYS* 6.0 0.2 - - + -
182B ASN* 3.4 31.4 - - - +
184B HIS* 2.4 45.2 + - - +
185B HIS* 5.5 1.2 - - - -
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Residues in contact with SER 111 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B TYR* 2.7 39.9 + - - +
35B GLY 4.6 1.7 + - - -
41B VAL* 3.5 10.7 - - - +
107B ARG* 2.8 22.3 + - - +
108B LEU* 3.5 9.6 - - - -
109B GLU 3.2 0.2 - - - -
110B GLU* 1.3 76.7 - - - +
112B LEU* 1.3 62.2 + - - +
114B TYR* 3.2 8.2 + - - +
115B GLN* 2.8 31.4 + - - +
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Residues in contact with LEU 112 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38B LEU* 3.5 29.8 - - + -
41B VAL* 3.5 17.2 - - + +
42B GLN* 4.0 17.9 - - + +
45B ARG* 3.9 31.6 - - - +
108B LEU 2.9 13.7 + - - +
109B GLU* 3.3 11.6 + - + +
111B SER* 1.3 77.0 - - - +
113B GLU* 1.3 59.0 + - + +
115B GLN* 3.3 1.2 + - - +
116B GLN* 2.9 52.3 + - + +
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Residues in contact with GLU 113 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109B GLU* 3.1 21.3 + - - +
110B GLU* 3.7 9.3 - - - +
112B LEU* 1.3 79.8 - - + +
114B TYR* 1.3 62.9 + - - +
116B GLN* 3.3 17.4 + - - +
117B PHE* 3.1 22.2 + - - +
174B ASN* 4.5 8.0 + - - +
178B LEU* 3.4 23.2 - - + +
181B LYS* 2.9 42.3 + - - +
182B ASN* 4.9 0.9 + - - -
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Residues in contact with TYR 114 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110B GLU* 3.1 15.8 + - + +
111B SER* 3.6 10.1 - - - +
113B GLU* 1.3 77.4 - - - +
115B GLN* 1.3 80.9 + - + +
117B PHE* 3.1 8.8 + + - +
118B VAL* 2.9 46.6 + - + +
178B LEU* 3.9 13.2 - - + +
185B HIS* 3.5 57.0 + + + -
188B ASN* 2.9 27.3 + - - -
189B ILE* 3.8 27.6 - - + -
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Residues in contact with GLN 115 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35B GLY 4.2 7.7 + - - -
36B ARG* 3.6 15.9 + - - +
37B ASP* 3.4 22.4 - - - +
38B LEU* 3.7 23.8 + - + +
41B VAL* 3.4 27.1 - - + -
111B SER* 2.8 21.3 + - - +
112B LEU 4.0 2.2 - - - +
114B TYR* 1.3 93.1 - - + +
116B GLN* 1.3 60.3 + - - +
118B VAL* 3.7 17.8 - - - +
119B ALA* 2.9 29.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7A MET 6.3 0.9 - - - -
10A GLN* 3.2 43.5 - - - +
13A ARG* 4.3 5.6 - - - +
38B LEU* 4.0 15.5 - - + -
42B GLN* 5.7 0.4 - - - +
112B LEU* 2.9 36.5 + - - +
113B GLU* 3.5 23.6 + - - +
114B TYR 3.1 0.2 - - - -
115B GLN* 1.3 74.0 - - - +
117B PHE* 1.3 61.4 + - - +
119B ALA* 3.2 2.7 + - - +
120B ASN* 2.9 39.8 + - - +
174B ASN* 5.6 1.8 - - - +
----------------------------------------------------------
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Residues in contact with PHE 117 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113B GLU 3.1 9.9 + - - +
114B TYR* 3.4 9.9 - + - +
116B GLN* 1.3 76.8 - - - +
118B VAL* 1.3 70.5 + - + +
120B ASN* 3.2 6.4 + - - +
121B VAL* 2.9 45.1 + - + +
171B VAL* 3.5 38.1 - - + -
174B ASN* 3.6 20.3 + - - +
175B GLY* 3.7 17.7 - - - -
178B LEU* 3.8 10.3 - - + -
189B ILE* 3.9 39.0 - - + -
192B LYS* 4.1 20.6 - - + -
193B MET* 4.0 15.5 - - + -
----------------------------------------------------------
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Residues in contact with VAL 118 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B TYR* 2.9 55.8 + - + +
115B GLN* 3.8 17.0 - - - +
116B GLN 3.3 0.2 - - - -
117B PHE* 1.3 83.4 - - + +
119B ALA* 1.3 62.5 + - - +
121B VAL* 3.4 2.6 + - - +
122B GLU* 3.1 21.5 + - + +
188B ASN* 5.2 0.4 - - - +
192B LYS* 4.4 24.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A ARG* 4.4 10.3 - - - +
38B LEU* 4.4 24.0 - - + +
115B GLN 2.9 18.2 + - - +
116B GLN 3.7 3.1 - - - +
118B VAL* 1.3 77.2 - - - +
120B ASN* 1.3 60.3 + - - +
122B GLU* 3.2 8.0 + - - +
123B GLU* 2.9 33.2 + - + +
----------------------------------------------------------
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Residues in contact with ASN 120 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7A MET 4.8 6.4 + - - -
9A HIS* 3.1 27.9 - - + +
13A ARG* 2.8 42.1 + - - +
116B GLN* 2.9 26.9 + - - +
117B PHE* 3.7 7.0 - - - +
119B ALA* 1.3 71.7 - - - +
121B VAL* 1.3 66.6 + - - +
123B GLU* 3.2 7.0 + - - +
124B GLU* 3.0 28.4 + - - +
171B VAL* 3.8 22.2 - - + +
174B ASN* 5.1 3.6 - - - +
----------------------------------------------------------
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Residues in contact with VAL 121 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117B PHE* 2.9 49.5 + - + +
118B VAL 3.7 4.9 - - - +
120B ASN* 1.3 77.2 - - - +
122B GLU* 1.3 58.9 + - - +
124B GLU* 3.2 1.6 + - - +
125B GLU* 2.9 51.1 + - + +
171B VAL* 3.8 13.2 - - + -
192B LYS* 4.0 31.9 - - + +
193B MET* 6.1 0.2 - - - -
196B LEU* 4.2 16.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU 122 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B VAL* 3.1 12.1 + - + +
119B ALA* 3.5 10.5 - - - +
121B VAL* 1.3 81.5 - - - +
123B GLU* 1.3 63.7 + - + +
125B GLU* 4.5 10.2 - - - +
126B ALA* 2.9 38.3 + - + +
----------------------------------------------------------
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Residues in contact with GLU 123 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9A HIS* 3.2 28.2 + - + +
13A ARG* 2.8 44.1 + - - +
119B ALA* 2.9 16.6 + - - +
120B ASN* 3.2 7.8 + - - +
122B GLU* 1.3 78.1 - - + +
124B GLU* 1.3 63.6 + - - +
126B ALA* 3.5 4.9 + - - +
127B TRP* 3.2 22.7 + - - +
164B HIS* 5.7 0.6 - - - -
----------------------------------------------------------
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Residues in contact with GLU 124 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9A HIS* 2.7 33.3 + - + +
120B ASN 3.0 18.6 + - - +
121B VAL 3.8 2.7 - - - +
123B GLU* 1.3 78.3 - - - +
125B GLU* 1.3 57.7 + - - +
127B TRP* 3.2 5.1 + - - +
128B ILE* 2.9 35.2 + - + +
164B HIS* 2.7 43.5 + - - +
167B ARG* 3.6 15.5 + - - +
168B VAL* 4.0 16.4 - - + +
171B VAL* 4.6 8.3 - - + -
196B LEU* 4.0 17.3 - - + -
----------------------------------------------------------
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Residues in contact with GLU 125 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121B VAL* 2.9 34.6 + - + +
122B GLU* 4.1 11.8 - - - +
124B GLU* 1.3 75.4 - - - +
126B ALA* 1.3 59.2 + - - +
128B ILE* 3.7 5.7 - - - +
129B ASN* 2.8 41.3 + - - +
192B LYS* 4.5 1.7 - - - +
195B GLY* 3.9 2.8 - - - -
196B LEU* 3.3 33.9 + - + +
199B LYS* 3.2 31.7 - - + +
----------------------------------------------------------
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Residues in contact with ALA 126 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122B GLU* 2.9 31.9 + - + +
123B GLU* 3.8 5.6 - - - +
125B GLU* 1.3 77.2 - - - +
127B TRP* 1.3 62.6 + - - +
129B ASN* 3.5 8.7 + - - +
130B GLU* 3.1 28.7 + - - +
----------------------------------------------------------
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Residues in contact with TRP 127 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123B GLU 3.2 11.9 + - - +
124B GLU* 3.5 7.6 - - - +
125B GLU 3.2 0.2 - - - -
126B ALA* 1.3 76.9 - - - +
128B ILE* 1.3 77.8 + - + +
130B GLU* 3.1 18.8 - - - +
131B LYS* 2.9 57.2 + - + +
157B PHE* 3.7 16.2 - + - -
160B ASP* 4.0 17.9 + - + +
161B PHE* 3.6 42.4 - + - -
164B HIS* 3.3 51.9 + + + +
203B LEU* 3.9 12.1 - - + -
----------------------------------------------------------
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Residues in contact with ILE 128 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124B GLU* 2.9 26.2 + - + +
125B GLU* 3.8 5.2 - - - +
127B TRP* 1.3 92.8 - - + +
129B ASN* 1.3 51.9 + - - +
131B LYS* 3.1 2.1 + - - +
132B MET* 2.7 46.6 + - + +
161B PHE* 5.3 0.9 - - + -
164B HIS* 6.0 1.3 - - + -
168B VAL* 4.6 5.6 - - + -
196B LEU* 4.2 15.5 - - + -
199B LYS* 3.8 39.7 - - + +
200B VAL* 3.9 27.8 - - + +
203B LEU* 4.2 16.9 - - + +
----------------------------------------------------------
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Residues in contact with ASN 129 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B GLU* 2.8 34.6 + - - +
126B ALA* 3.8 7.9 - - - +
128B ILE* 1.3 76.2 - - - +
130B GLU* 1.3 62.9 + - - +
132B MET* 3.4 12.0 + - - +
133B THR* 3.3 21.5 + - - +
199B LYS* 3.1 33.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 130 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126B ALA* 3.1 21.1 + - - +
127B TRP* 3.1 30.4 - - - +
129B ASN* 1.3 78.3 - - - +
131B LYS* 1.3 83.0 + - + +
133B THR* 3.2 22.7 + - - -
134B LEU* 3.4 11.7 + - + +
----------------------------------------------------------
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Residues in contact with LYS 131 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127B TRP* 2.9 68.9 + - + +
128B ILE 3.8 3.1 - - - +
130B GLU* 1.3 87.5 + - + +
132B MET* 1.3 60.3 + - - +
134B LEU* 3.1 27.7 + - + +
135B VAL* 2.9 32.8 + - + +
157B PHE* 3.8 29.0 - - + +
160B ASP* 5.5 4.4 + - - -
203B LEU* 4.3 10.5 - - + -
----------------------------------------------------------
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Residues in contact with MET 132 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128B ILE* 2.7 36.2 + - + +
129B ASN* 3.6 10.8 - - - +
130B GLU 3.3 0.2 - - - -
131B LYS* 1.3 73.4 - - - +
133B THR* 1.3 62.5 + - + +
135B VAL* 3.6 2.4 + - - +
136B ALA* 3.1 23.7 + - - +
199B LYS 5.5 0.2 - - - +
202B ASP* 4.0 24.7 - - + +
203B LEU* 3.5 37.4 - - + +
206B ALA* 4.2 13.9 - - + +
----------------------------------------------------------
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Residues in contact with THR 133 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B ASN 3.3 17.0 - - - +
130B GLU* 3.2 10.7 + - - +
131B LYS 3.2 0.6 - - - -
132B MET* 1.3 78.3 - - + +
134B LEU* 1.3 68.8 + - - +
136B ALA* 3.1 18.5 + - - +
137B SER* 3.6 5.0 + - - -
----------------------------------------------------------
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Residues in contact with LEU 134 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130B GLU* 3.4 9.7 + - + +
131B LYS* 3.1 40.0 + - + +
133B THR* 1.3 84.0 + - - +
135B VAL* 1.3 63.0 - - + +
137B SER* 3.1 24.4 + - - -
210B ARG* 4.5 4.9 + - - -
----------------------------------------------------------
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Residues in contact with VAL 135 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131B LYS 2.9 18.5 + - - +
132B MET 4.0 2.5 - - - +
134B LEU* 1.3 78.4 - - + +
136B ALA* 1.3 60.6 + - - +
137B SER 3.1 2.1 + - - +
154B HIS* 4.5 11.0 - - + +
157B PHE* 4.2 33.2 - - + -
203B LEU* 4.4 5.8 - - + -
206B ALA* 3.1 47.1 - - + +
207B ALA* 3.4 7.9 - - - +
210B ARG* 3.4 26.2 - - + +
----------------------------------------------------------
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Residues in contact with ALA 136 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132B MET 3.1 18.5 + - - +
133B THR* 3.4 10.8 - - - +
134B LEU 3.1 1.0 - - - -
135B VAL* 1.3 77.2 - - - +
137B SER* 1.3 65.5 + - - +
138B GLU* 3.4 12.8 + - - +
206B ALA* 6.0 2.5 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il