Contacts of the helix formed by residues 79 - 136 (chain C) in PDB entry 1CUN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 79 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163A VAL* 4.1 22.6 - - - +
167A ARG* 5.3 3.2 + - - -
77C THR 4.1 0.2 - - - -
78C ILE* 1.3 83.7 - - - +
80C LYS* 1.3 64.2 + - - +
81C GLU* 3.2 4.0 - - - -
82C GLU* 3.1 20.2 + - - +
83C ILE* 3.3 18.2 + - - +
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Residues in contact with LYS 80 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73C SER* 3.5 20.9 - - - +
76C ASN* 3.1 40.4 - - + +
77C THR 3.5 13.7 - - - +
78C ILE* 3.2 2.2 - - - -
79C GLY* 1.3 76.9 - - - +
81C GLU* 1.3 63.7 + - - +
83C ILE* 3.2 12.2 + - - +
84C GLN* 3.0 61.0 + - - +
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Residues in contact with GLU 81 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79C GLY* 3.2 1.5 - - - -
80C LYS* 1.3 79.8 - - - +
82C GLU* 1.3 62.2 + - - +
84C GLN* 3.4 13.2 + - - +
85C GLN* 3.1 48.5 + - + +
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Residues in contact with GLU 82 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163A VAL* 5.0 2.8 - - - +
167A ARG* 3.0 29.0 + - - +
12C PHE* 3.6 23.7 - - + -
79C GLY* 3.1 12.9 + - - +
81C GLU* 1.3 78.4 - - - +
83C ILE* 1.3 63.9 - - - +
85C GLN* 3.3 8.6 + - + +
86C ARG* 3.0 41.3 + - + +
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Residues in contact with ILE 83 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167A ARG* 5.9 0.9 - - - +
8C VAL* 4.5 14.8 - - + -
11C PHE* 3.9 21.3 - - + -
12C PHE* 4.0 24.2 - - + -
69C GLY* 4.1 21.3 - - - +
72C LEU* 4.3 17.3 - - + +
73C SER* 4.6 7.9 - - - -
77C THR* 3.9 22.0 - - - +
78C ILE 4.8 1.8 - - - +
79C GLY 3.5 17.5 - - - +
80C LYS* 3.2 10.2 + - - +
82C GLU* 1.3 77.4 - - + +
84C GLN* 1.3 57.0 + - + +
86C ARG* 4.0 2.2 - - - +
87C LEU* 2.9 33.7 + - + +
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Residues in contact with GLN 84 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73C SER* 3.3 23.7 + - - +
80C LYS* 3.0 49.3 + - - +
81C GLU* 3.8 13.3 - - - +
82C GLU 3.2 0.4 - - - -
83C ILE* 1.3 75.1 - - - +
85C GLN* 1.3 61.0 + - + +
87C LEU* 3.7 8.2 - - + +
88C ALA* 2.9 29.8 + - - +
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Residues in contact with GLN 85 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81C GLU* 3.1 51.8 + - + +
82C GLU* 3.9 7.1 - - - +
84C GLN* 1.3 73.9 - - + +
86C ARG* 1.3 68.4 + - + +
88C ALA* 3.3 6.3 + - - +
89C GLN* 3.0 24.9 + - - +
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Residues in contact with ARG 86 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12C PHE* 3.7 22.3 - - + -
15C MET* 3.1 45.3 - - + +
16C ASP* 2.9 27.5 + - - -
19C GLU* 4.2 9.9 + - - +
82C GLU* 3.0 34.0 + - + +
83C ILE 4.0 2.5 - - - +
85C GLN* 1.3 74.4 - - + +
87C LEU* 1.3 65.9 + - - +
89C GLN* 3.0 31.7 + - - +
90C PHE* 3.0 24.1 + - - +
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Residues in contact with LEU 87 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11C PHE* 4.2 12.1 - - + -
15C MET* 4.2 2.6 - - - -
65C VAL* 4.5 1.3 - - + +
66C LEU* 3.7 41.1 - - + +
69C GLY* 3.8 36.3 - - - +
70C LYS* 4.1 3.8 - - + +
73C SER* 5.3 3.6 - - - -
83C ILE* 2.9 22.8 + - + +
84C GLN* 3.7 8.1 - - + +
86C ARG* 1.3 75.8 - - - +
88C ALA* 1.3 58.4 + - - +
90C PHE* 3.3 11.3 + - + +
91C VAL* 2.9 34.9 + - + +
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Residues in contact with ALA 88 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84C GLN 2.9 18.8 + - - +
85C GLN* 3.5 7.6 - - - +
87C LEU* 1.3 75.3 - - - +
89C GLN* 1.3 65.6 + - - +
91C VAL* 3.3 7.0 + - - +
92C ASP* 3.1 24.6 + - - +
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Residues in contact with GLN 89 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19C GLU* 3.9 13.9 - - - +
85C GLN 3.0 15.7 + - - +
86C ARG* 3.0 39.9 + - - +
88C ALA* 1.3 77.0 - - - +
90C PHE* 1.3 58.6 + - - +
92C ASP* 3.4 6.5 + - - +
93C HIS* 3.0 51.2 + - + -
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Residues in contact with PHE 90 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15C MET* 3.9 13.5 - - + -
18C GLU* 3.8 30.5 - - + -
19C GLU* 3.1 31.9 - - - +
22C ILE* 3.9 15.7 - - + +
62C ILE* 4.0 25.6 - - + -
65C VAL* 3.5 35.2 - - + -
66C LEU* 3.7 26.7 - - + -
86C ARG 3.0 18.5 + - - +
87C LEU* 3.3 7.4 - - + +
89C GLN* 1.3 75.2 - - - +
91C VAL* 1.3 65.5 + - - +
93C HIS* 3.1 4.2 + - - +
94C TRP* 3.1 22.0 + - + +
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Residues in contact with VAL 91 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66C LEU* 3.5 32.5 - - + -
87C LEU* 2.9 22.6 + - + +
88C ALA* 3.7 6.7 - - - +
90C PHE* 1.3 76.2 - - - +
92C ASP* 1.3 60.3 + - - +
94C TRP* 3.4 9.0 + - + +
95C LYS* 3.0 59.2 + - + +
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Residues in contact with ASP 92 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88C ALA 3.1 16.8 + - - +
89C GLN* 3.8 7.6 - - - +
90C PHE 3.1 0.2 - - - -
91C VAL* 1.3 78.8 - - - +
93C HIS* 1.3 61.8 + - + +
95C LYS* 3.8 17.3 + - - +
96C GLU* 2.9 32.1 + - - +
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Residues in contact with HIS 93 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19C GLU* 2.5 39.8 + - + +
22C ILE* 3.6 23.6 - - + +
26C LYS* 6.3 0.4 - - + -
89C GLN* 3.0 40.1 + - + +
90C PHE* 3.1 5.4 + - - +
92C ASP* 1.3 77.4 - - + +
94C TRP* 1.3 57.9 + - - +
96C GLU* 3.5 21.0 + - - +
97C LEU* 3.1 26.7 + - - +
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Residues in contact with TRP 94 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21C TRP* 3.7 25.8 - + - -
22C ILE* 3.9 22.2 - - + +
55C LEU* 3.8 30.1 - - + -
58C HIS 5.0 0.7 - - - -
59C GLU* 3.9 31.1 + - + +
62C ILE* 4.0 36.1 - - + +
66C LEU* 5.7 4.3 - - + -
90C PHE* 3.1 12.9 + - + +
91C VAL* 3.6 12.1 - - + +
93C HIS* 1.3 75.4 - - - +
95C LYS* 1.3 68.1 + - + +
97C LEU* 3.3 17.1 + - + +
98C LYS* 3.0 67.5 + - + +
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Residues in contact with LYS 95 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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91C VAL* 3.0 44.1 + - + +
92C ASP* 3.4 18.1 + - - +
94C TRP* 1.3 77.9 - - + +
96C GLU* 1.3 62.1 + - - +
98C LYS* 3.3 19.5 + - - +
99C GLN* 2.9 27.7 + - - +
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Residues in contact with GLU 96 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C LYS* 3.5 37.6 + - + +
92C ASP* 2.9 19.7 + - - +
93C HIS* 3.5 22.7 - - - +
95C LYS* 1.3 77.3 - - - +
97C LEU* 1.3 57.4 + - - +
99C GLN* 3.3 14.5 + - - +
100C LEU* 2.9 53.3 + - + +
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Residues in contact with LEU 97 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21C TRP* 4.1 7.4 - - + -
22C ILE* 4.1 14.8 - - + +
25C LYS* 3.7 19.5 - - + +
26C LYS* 3.5 33.0 - - + +
29C VAL* 4.4 8.5 - - + -
51C LEU* 5.9 1.6 - - + -
55C LEU* 3.7 33.0 - - + -
93C HIS 3.1 18.1 + - - +
94C TRP* 3.6 22.7 - - + +
96C GLU* 1.3 78.9 - - - +
98C LYS* 1.3 58.0 + - - +
100C LEU* 3.3 5.4 + - - -
101C ALA* 2.9 31.0 + - + +
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Residues in contact with LYS 98 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55C LEU* 4.9 9.6 - - + -
59C GLU* 4.2 12.4 + - - +
94C TRP* 3.0 69.8 + - + +
95C LYS* 3.8 15.4 - - - +
97C LEU* 1.3 75.5 - - - +
99C GLN* 1.3 57.1 - - - +
101C ALA* 3.9 5.5 - - - +
102C ALA* 3.1 29.6 + - - +
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Residues in contact with GLN 99 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95C LYS* 2.9 16.5 + - - +
96C GLU* 3.3 15.0 + - - +
98C LYS* 1.3 76.1 - - - +
100C LEU* 1.3 81.2 + - + +
102C ALA* 3.5 4.9 + - - +
103C ALA* 3.0 28.7 + - + +
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Residues in contact with LEU 100 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26C LYS* 3.9 34.3 - - + -
29C VAL* 3.6 19.4 - - + +
30C SER* 4.4 11.7 - - - +
96C GLU* 2.9 31.8 + - + +
97C LEU* 3.8 2.5 - - - +
99C GLN* 1.3 106.9 - - + +
101C ALA* 1.3 66.2 + - - +
103C ALA* 3.3 7.3 + - + +
104C ARG* 3.0 23.4 + - - +
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Residues in contact with ALA 101 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29C VAL* 3.3 23.7 - - + +
48C HIS* 3.0 15.5 + - + +
51C LEU* 4.4 7.0 - - + -
52C GLU* 5.2 4.7 - - + -
55C LEU* 4.0 23.6 - - + -
97C LEU* 2.9 18.6 + - + +
98C LYS 3.9 3.6 - - - +
100C LEU* 1.3 78.3 - - - +
102C ALA* 1.3 57.7 + - - +
104C ARG 3.3 0.5 + - - -
105C GLY 3.0 23.4 + - - -
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Residues in contact with ALA 102 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52C GLU* 5.1 5.8 - - - -
98C LYS 3.1 19.1 + - - +
99C GLN* 3.8 5.6 - - - +
101C ALA* 1.3 76.0 - - - +
103C ALA* 1.3 60.9 + - - +
105C GLY* 3.4 2.4 + - - +
106C GLN* 2.7 35.1 + - - +
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Residues in contact with ALA 103 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99C GLN* 3.0 19.0 + - + +
100C LEU* 3.6 9.0 - - + +
101C ALA 3.2 0.4 - - - -
102C ALA* 1.3 76.0 - - - +
104C ARG* 1.3 65.6 + - - +
106C GLN* 3.2 8.6 + - - +
107C ARG* 3.0 25.1 + - - +
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Residues in contact with ARG 104 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28C LEU 5.3 0.2 + - - -
29C VAL* 3.5 32.0 - - + +
31C SER* 3.2 36.4 + - - +
33C ASP* 2.9 30.1 + - - +
34C TYR* 3.6 17.4 - - + -
44C LEU* 3.9 22.2 + - - +
47C LYS* 6.3 0.4 - - - +
48C HIS* 4.0 13.4 + - + +
100C LEU 3.0 16.0 + - - +
101C ALA 3.8 4.0 - - - +
103C ALA* 1.3 76.5 - - - +
105C GLY* 1.3 65.6 - - - +
107C ARG* 3.1 7.2 + - - +
108C LEU* 2.8 45.6 + - + +
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Residues in contact with GLY 105 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45C ARG* 5.2 0.5 + - - -
48C HIS* 3.4 27.5 + - - -
52C GLU* 4.7 4.3 - - - -
101C ALA 3.0 10.9 + - - -
102C ALA* 3.4 4.0 + - - -
103C ALA 3.3 0.2 - - - -
104C ARG* 1.3 76.7 - - - +
106C GLN* 1.3 58.2 + - - +
108C LEU* 3.4 5.6 + - - +
109C GLU* 3.1 34.2 + - - +
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Residues in contact with GLN 106 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102C ALA* 2.7 34.2 + - - +
103C ALA* 3.4 11.2 - - - +
105C GLY* 1.3 75.0 - - - +
107C ARG* 1.3 65.9 + - + +
109C GLU* 3.0 35.1 + - + +
110C GLU* 3.0 8.9 + - - +
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Residues in contact with ARG 107 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34C TYR* 3.5 54.1 - - + +
103C ALA 3.0 14.7 + - - +
104C ARG* 3.6 5.8 - - - +
106C GLN* 1.3 75.8 - - + +
108C LEU* 1.3 57.4 + - - +
110C GLU* 3.2 39.7 + - - +
111C SER* 2.9 43.2 + - - +
114C TYR* 6.2 0.4 - - - +
184C HIS* 4.2 14.7 + - - +
185C HIS* 5.9 6.1 + - - -
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Residues in contact with LEU 108 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34C TYR* 3.8 33.4 - - + +
41C VAL* 3.5 9.2 - - + +
44C LEU* 3.9 32.1 - - + +
45C ARG* 4.1 15.5 - - + +
48C HIS* 3.8 34.3 - - + -
104C ARG* 2.8 44.1 + - + +
105C GLY* 3.7 5.4 - - - +
107C ARG* 1.3 75.9 - - - +
109C GLU* 1.3 57.2 + - - +
111C SER* 3.3 4.4 + - - -
112C LEU* 2.9 28.9 + - - +
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Residues in contact with GLU 109 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45C ARG* 2.6 44.8 + - - +
105C GLY 3.1 17.9 + - - +
106C GLN* 3.0 30.8 + - + +
108C LEU* 1.3 74.7 - - - +
110C GLU* 1.3 61.2 + - - +
112C LEU* 3.4 10.3 + - + +
113C GLU* 3.2 31.0 + - + +
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Residues in contact with GLU 110 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106C GLN 3.0 11.2 + - - +
107C ARG* 3.4 32.1 + - - +
109C GLU* 1.3 74.7 - - - +
111C SER* 1.3 65.8 + - - +
113C GLU* 3.2 15.9 + - - +
114C TYR* 2.9 23.0 + - + +
178C LEU* 5.1 4.5 - - + +
181C LYS* 6.2 2.7 - - - -
182C ASN* 2.8 24.0 + - - +
184C HIS* 2.3 40.5 + - - +
185C HIS* 5.7 0.5 - - - -
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Residues in contact with SER 111 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34C TYR* 2.7 42.0 + - - +
35C GLY 4.6 1.4 + - - -
41C VAL* 3.6 9.4 - - - +
107C ARG* 2.9 22.1 + - - +
108C LEU* 3.5 9.4 - - - -
110C GLU* 1.3 76.9 - - - +
112C LEU* 1.3 56.9 + - - +
114C TYR* 3.2 8.5 + - - +
115C GLN* 2.8 40.0 + - - +
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Residues in contact with LEU 112 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C LEU* 3.5 28.3 - - + -
41C VAL* 3.5 15.2 - - + +
42C GLN* 4.1 17.3 - - + +
45C ARG* 3.8 32.3 - - - +
108C LEU 2.9 17.4 + - - +
109C GLU* 3.5 10.8 - - + +
110C GLU 3.2 0.2 - - - -
111C SER* 1.3 77.8 - - - +
113C GLU* 1.3 59.6 + - + +
115C GLN* 3.2 1.0 + - - -
116C GLN* 2.9 55.0 + - - +
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Residues in contact with GLU 113 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109C GLU* 3.2 18.5 + - + +
110C GLU* 3.2 13.4 + - - +
112C LEU* 1.3 77.4 - - + +
114C TYR* 1.3 62.9 + - - +
116C GLN* 3.4 15.0 + - - +
117C PHE* 3.0 22.5 + - - +
174C ASN* 4.5 7.2 - - - +
178C LEU* 3.6 22.8 - - + +
181C LYS* 2.5 38.1 + - - -
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Residues in contact with TYR 114 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107C ARG* 6.2 0.2 - - - +
110C GLU* 2.9 15.6 + - + +
111C SER* 3.6 11.2 - - - +
113C GLU* 1.3 78.2 - - - +
115C GLN* 1.3 82.4 + - + +
117C PHE* 3.2 8.0 + + - +
118C VAL* 3.0 46.0 + - + +
178C LEU* 4.0 13.0 - - + +
185C HIS* 3.4 60.1 + + + +
188C ASN* 2.9 25.4 + - - -
189C ILE* 3.8 28.5 - - + -
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Residues in contact with GLN 115 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35C GLY 4.1 8.6 + - - +
36C ARG* 3.6 17.5 + - - +
37C ASP* 3.5 20.9 - - - +
38C LEU* 3.8 21.8 + - + +
41C VAL* 3.4 23.8 - - + -
111C SER* 2.8 27.3 + - - +
112C LEU 4.0 2.2 - - - +
114C TYR* 1.3 93.0 - - + +
116C GLN* 1.3 61.3 + - - +
118C VAL* 3.8 18.0 - - - +
119C ALA* 2.9 28.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 116 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10B GLN* 3.1 40.9 - - - +
13B ARG* 4.3 5.8 - - - +
38C LEU* 3.6 19.3 - - + +
42C GLN* 5.2 0.4 - - - +
112C LEU* 2.9 44.5 + - - +
113C GLU* 3.7 15.4 - - - +
114C TYR 3.2 0.2 - - - -
115C GLN* 1.3 77.1 - - - +
117C PHE* 1.3 60.0 + - - +
119C ALA* 3.3 2.2 + - - -
120C ASN* 2.8 40.2 + - - +
174C ASN* 5.7 1.1 - - - +
----------------------------------------------------------
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Residues in contact with PHE 117 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113C GLU 3.0 13.8 + - - +
114C TYR* 3.2 11.4 + + - +
116C GLN* 1.3 77.6 - - - +
118C VAL* 1.3 70.7 + - + +
120C ASN* 3.2 7.1 + - - +
121C VAL* 3.0 41.0 + - + +
171C VAL* 3.6 39.5 - - + -
174C ASN* 3.7 19.4 + - - +
175C GLY* 3.8 16.4 - - - -
178C LEU* 3.7 9.9 - - + -
189C ILE* 3.9 47.3 - - + -
192C LYS* 4.1 15.9 - - + -
193C MET* 4.1 9.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL 118 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114C TYR* 3.0 52.2 + - + +
115C GLN* 3.8 20.4 - - - +
117C PHE* 1.3 83.8 - - + +
119C ALA* 1.3 61.9 + - - +
121C VAL* 3.4 3.5 + - - +
122C GLU* 3.2 21.7 + - + +
188C ASN* 5.1 0.4 - - - +
192C LYS* 4.3 24.4 - - - +
----------------------------------------------------------
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Residues in contact with ALA 119 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13B ARG* 4.3 9.6 - - - +
38C LEU* 4.3 24.7 - - + +
115C GLN 2.9 18.3 + - - +
116C GLN 3.7 3.8 - - - +
117C PHE 3.3 0.2 - - - -
118C VAL* 1.3 77.5 - - - +
120C ASN* 1.3 58.0 + - - +
122C GLU* 3.3 6.7 + - - +
123C GLU* 3.0 33.3 + - + +
----------------------------------------------------------
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Residues in contact with ASN 120 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7B MET 5.9 1.6 + - - -
9B HIS* 3.2 29.6 - - + +
13B ARG* 2.8 42.1 + - - +
116C GLN* 2.8 25.2 + - - +
117C PHE* 3.2 8.0 + - - +
119C ALA* 1.3 73.8 - - - +
121C VAL* 1.3 66.1 + - - +
123C GLU* 3.2 3.8 + - - +
124C GLU* 3.0 29.1 + - - +
171C VAL* 3.8 21.8 - - + +
174C ASN* 4.9 4.5 - - - +
----------------------------------------------------------
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Residues in contact with VAL 121 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117C PHE* 3.0 50.4 + - + +
118C VAL 3.7 5.4 - - - +
120C ASN* 1.3 73.9 - - - +
122C GLU* 1.3 59.6 + - - +
124C GLU* 3.2 1.9 + - - +
125C GLU* 2.8 56.0 + - + +
171C VAL* 3.7 13.9 - - + +
192C LYS* 4.2 33.0 - - + +
196C LEU* 4.3 16.8 - - + -
----------------------------------------------------------
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Residues in contact with GLU 122 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118C VAL* 3.2 12.7 + - + +
119C ALA* 3.7 9.0 - - - +
120C ASN 3.2 0.2 - - - -
121C VAL* 1.3 77.9 - - - +
123C GLU* 1.3 66.5 + - + +
125C GLU* 4.5 12.1 - - - +
126C ALA* 2.9 42.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 123 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9B HIS* 3.2 27.1 + - + +
13B ARG* 2.8 43.3 + - - +
119C ALA* 3.0 16.8 + - - +
120C ASN 3.2 6.9 + - - +
122C GLU* 1.3 76.6 - - + +
124C GLU* 1.3 64.8 + - - +
126C ALA* 3.5 4.6 + - - +
127C TRP* 3.2 22.5 + - - +
164C HIS* 5.6 0.7 - - - -
----------------------------------------------------------
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Residues in contact with GLU 124 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9B HIS* 2.6 33.0 - - + +
120C ASN 3.0 18.8 + - - +
121C VAL 3.8 2.9 - - - +
123C GLU* 1.3 75.5 - - - +
125C GLU* 1.3 65.6 + - - +
127C TRP* 3.3 4.5 + - - +
128C ILE* 3.0 30.5 + - + +
164C HIS* 2.7 44.9 + - - +
167C ARG* 3.6 16.6 + - + +
168C VAL* 4.0 14.5 - - + +
171C VAL* 4.3 9.9 - - + -
196C LEU* 3.9 16.8 - - + -
----------------------------------------------------------
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Residues in contact with GLU 125 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121C VAL* 2.8 37.9 + - + +
122C GLU* 4.0 13.7 - - - +
124C GLU* 1.3 72.3 - - - +
126C ALA* 1.3 57.1 + - - +
128C ILE* 3.3 6.1 + - - +
129C ASN* 2.8 40.6 + - - +
192C LYS* 4.7 1.7 - - - +
195C GLY* 4.2 2.8 - - - -
196C LEU* 3.6 32.4 + - + +
199C LYS* 3.5 32.7 - - + +
----------------------------------------------------------
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Residues in contact with ALA 126 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122C GLU* 2.9 32.2 + - + +
123C GLU* 3.8 5.8 - - - +
125C GLU* 1.3 76.0 - - - +
127C TRP* 1.3 63.2 + - - +
129C ASN* 3.3 9.0 + - - +
130C GLU* 3.1 41.3 + - - +
----------------------------------------------------------
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Residues in contact with TRP 127 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123C GLU 3.2 12.1 + - - +
124C GLU* 3.7 6.5 - - - +
126C ALA* 1.3 77.4 - - - +
128C ILE* 1.3 76.1 + - + +
130C GLU* 3.2 13.0 + - - +
131C LYS* 3.0 58.6 + - + +
157C PHE* 3.8 17.0 - + - -
160C ASP* 4.1 18.3 - - + +
161C PHE* 3.6 41.7 - + - -
164C HIS* 3.3 53.9 + + + +
203C LEU* 3.8 13.0 - - + -
----------------------------------------------------------
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Residues in contact with ILE 128 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124C GLU* 3.0 22.5 + - - +
125C GLU* 3.7 5.8 - - - +
127C TRP* 1.3 95.9 - - + +
129C ASN* 1.3 64.6 + - - +
131C LYS* 3.3 2.1 + - - +
132C MET* 2.9 33.6 + - + +
161C PHE* 5.5 2.2 - - + -
164C HIS* 6.0 0.9 - - + -
168C VAL* 4.7 5.6 - - + -
196C LEU* 4.2 14.6 - - + -
199C LYS* 4.0 46.0 - - + +
200C VAL* 4.0 24.7 - - + +
203C LEU* 4.2 15.4 - - + +
----------------------------------------------------------
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Residues in contact with ASN 129 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125C GLU* 2.8 33.0 + - - +
126C ALA* 3.8 7.2 - - - +
128C ILE* 1.3 74.4 - - - +
130C GLU* 1.3 64.9 + - + +
132C MET* 3.4 15.0 + - - +
133C THR* 3.5 15.6 + - - -
199C LYS* 3.0 32.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 130 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126C ALA* 3.1 32.0 + - - +
127C TRP* 3.6 10.9 - - - +
129C ASN* 1.3 78.6 - - + +
131C LYS* 1.3 68.1 + - + +
133C THR* 3.4 8.4 + - - -
134C LEU* 3.4 21.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 131 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127C TRP* 3.0 64.5 + - + +
128C ILE 3.3 3.1 + - - +
130C GLU* 1.3 78.4 - - + +
132C MET* 1.3 60.1 + - - +
134C LEU* 3.2 27.4 + - + +
135C VAL* 2.8 34.3 + - - +
157C PHE* 3.7 27.3 - - + +
160C ASP* 5.7 4.2 + - - -
203C LEU* 4.2 11.0 - - + -
----------------------------------------------------------
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Residues in contact with MET 132 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128C ILE* 2.9 31.5 + - + +
129C ASN* 3.6 11.0 - - - +
130C GLU 3.3 0.2 - - - -
131C LYS* 1.3 74.8 - - - +
133C THR* 1.3 63.6 + - - +
135C VAL* 3.8 3.1 - - - +
136C ALA* 3.1 24.3 + - - +
199C LYS* 5.2 0.9 - - - +
202C ASP* 3.9 21.1 - - + +
203C LEU* 3.5 37.9 - - + +
206C ALA* 4.0 15.0 - - + +
----------------------------------------------------------
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Residues in contact with THR 133 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129C ASN 3.5 10.3 + - - -
130C GLU* 3.4 10.9 + - - -
131C LYS 3.2 0.8 - - - -
132C MET* 1.3 77.1 - - - +
134C LEU* 1.3 68.4 + - + +
136C ALA* 3.1 18.9 + - + +
137C SER* 3.7 4.5 + - - -
----------------------------------------------------------
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Residues in contact with LEU 134 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130C GLU 3.4 12.0 + - - +
131C LYS* 3.2 38.0 + - + +
133C THR* 1.3 81.4 - - + +
135C VAL* 1.3 63.6 + - + +
137C SER* 3.1 23.9 + - - -
157C PHE* 6.0 2.7 - - + -
210C ARG* 4.7 5.0 + - - -
----------------------------------------------------------
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Residues in contact with VAL 135 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131C LYS 2.8 23.1 + - - +
132C MET 4.0 2.7 - - - +
134C LEU* 1.3 74.6 - - + +
136C ALA* 1.3 58.6 + - - +
137C SER 3.2 3.4 + - - +
154C HIS* 4.6 8.3 - - + +
157C PHE* 4.1 35.4 - - + -
203C LEU* 4.4 5.4 - - + -
206C ALA* 3.0 47.8 - - + +
207C ALA* 3.3 7.4 - - - +
210C ARG* 3.4 27.1 - - + +
----------------------------------------------------------
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Residues in contact with ALA 136 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132C MET 3.1 17.7 + - - +
133C THR* 3.5 10.5 - - - +
134C LEU 3.1 0.8 - - - -
135C VAL* 1.3 75.5 - - - +
137C SER* 1.3 66.3 + - - +
138C GLU* 3.5 12.8 + - - +
206C ALA* 6.1 1.8 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il