Contacts of the helix formed by residues 56 - 104 (chain B) in PDB entry 1DE8
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 56 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54B SER* 3.2 14.8 - - - -
55B PRO* 1.3 80.5 - - - +
57B GLY* 1.3 54.2 + - - -
58B LYS* 3.4 25.3 + - - +
293B PRO* 4.0 13.4 + - - -
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Residues in contact with GLY 57 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53B THR* 3.8 13.1 - - - +
54B SER 2.7 12.6 + - - -
55B PRO 2.9 3.6 - - - -
56B SER* 1.3 79.6 - - - +
58B LYS* 1.3 64.8 + - - +
59B PRO* 3.7 4.9 - - - +
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Residues in contact with LYS 58 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53B THR* 3.0 0.7 - - - -
54B SER* 2.5 42.6 + - - +
56B SER* 3.7 22.7 - - - +
57B GLY* 1.3 77.5 - - - +
59B PRO* 1.4 69.0 - - + +
317B ALA* 3.8 17.0 - - + +
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Residues in contact with PRO 59 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52B LYS 3.2 10.5 - - - +
53B THR* 3.5 10.1 - - + -
57B GLY 3.9 4.9 - - - +
58B LYS* 1.4 87.1 - - + +
60B ALA* 1.3 70.3 + - - +
61B THR* 3.5 14.1 - - + +
317B ALA* 3.9 5.6 - - - +
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Residues in contact with ALA 60 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52B LYS* 2.6 28.5 + - + +
59B PRO* 1.3 76.1 - - - +
61B THR* 1.3 61.4 + - - +
62B LEU 4.7 1.3 - - - +
296B CYS* 3.4 30.0 - - + -
315B TYR* 4.0 24.7 - - + -
316B LEU 3.6 3.6 - - - +
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Residues in contact with THR 61 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59B PRO* 3.5 16.8 - - + +
60B ALA* 1.3 74.0 - - - +
62B LEU* 1.3 66.8 + - - +
63B LYS 4.3 0.2 - - - -
90B ASP* 3.8 7.5 - - - +
316B LEU 2.6 6.0 + - - -
317B ALA* 4.5 0.7 - - - -
318B LEU* 3.0 46.7 + - - +
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Residues in contact with LEU 62 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60B ALA* 3.7 0.4 - - - -
61B THR* 1.3 87.5 - - - +
63B LYS* 1.3 61.2 + - - +
64B ILE* 4.0 19.7 - - + -
90B ASP* 3.3 24.2 - - + +
91B ILE* 4.9 7.0 - - + -
137B GLN* 5.4 7.6 - - - +
165B PHE* 3.6 37.2 - - + -
314B LEU 3.2 5.7 - - - +
315B TYR* 3.2 4.6 - - - -
316B LEU* 2.8 45.4 + - + +
318B LEU* 4.2 12.8 - - + -
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Residues in contact with LYS 63 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50B ASP* 4.8 0.6 + - - -
52B LYS* 5.4 3.2 - - - +
62B LEU* 1.3 72.7 - - - +
64B ILE* 1.3 59.8 + - - +
87B GLU* 2.8 50.2 + - - +
88B ALA* 3.8 16.4 - - + +
89B PRO* 3.3 6.8 - - + +
90B ASP* 2.7 45.3 + - - +
301B ARG* 4.2 0.2 - - - +
313B THR* 3.6 15.0 - - + -
314B LEU 3.3 3.1 - - - -
315B TYR* 3.0 44.6 + - + -
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Residues in contact with ILE 64 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B LEU* 4.0 29.8 - - + -
63B LYS* 1.3 76.3 - - - +
65B CYS* 1.3 68.1 + - - +
91B ILE* 3.4 36.1 - - + +
93B CYS* 4.3 13.0 - - - -
165B PHE* 4.4 12.6 - - + -
167B LEU* 4.3 11.2 - - + -
206B VAL* 5.0 9.6 - - + -
208B CYS* 5.2 0.7 - - - -
285B PHE* 3.2 16.9 - - + -
313B THR* 3.1 4.0 - - - -
314B LEU* 2.6 47.3 + - + +
316B LEU* 5.0 11.0 - - + -
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Residues in contact with CYS 65 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64B ILE* 1.3 77.7 - - - +
66B SER* 1.3 66.9 + - - +
67B TRP* 4.5 1.6 - - - -
83B TRP* 4.0 16.2 - - + -
87B GLU* 5.0 2.5 - - - +
89B PRO* 4.1 13.7 - - + +
91B ILE 3.1 7.8 + - - +
92B LEU* 3.3 24.8 - - + +
93B CYS* 2.8 32.2 + - - +
311B PRO* 3.6 21.5 - - - -
312B ILE 3.0 12.6 - - - +
313B THR* 4.0 11.0 - - + +
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Residues in contact with SER 66 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65B CYS* 1.3 74.9 - - - +
67B TRP* 1.3 61.3 + - - +
93B CYS* 3.1 13.2 - - - +
95B GLN* 2.7 32.9 + - - -
208B CYS* 3.9 15.5 - - - -
209B GLY* 3.5 10.7 + - - -
283B ASP* 5.9 1.1 - - - -
285B PHE* 4.0 5.8 - - - -
311B PRO* 3.5 0.5 - - - +
312B ILE* 2.8 47.2 + - - +
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Residues in contact with TRP 67 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65B CYS* 4.5 4.0 - - - -
66B SER* 1.3 75.7 - - - +
68B ASN* 1.3 94.0 + - - +
69B VAL* 3.1 6.1 + - + +
75B TRP* 3.0 49.4 - + - -
80B GLY* 4.8 3.8 - - - -
83B TRP* 3.7 31.2 - + + -
84B VAL* 4.6 2.0 - - + -
92B LEU* 5.7 0.2 - - + -
93B CYS 2.6 10.9 + - - +
94B LEU* 3.1 14.9 - - + -
95B GLN* 2.9 23.8 + - - -
283B ASP* 5.4 1.6 - - - -
304B ALA* 4.2 11.9 - - + -
305B LEU 3.4 27.8 - - - -
306B GLY 4.5 2.7 - - - -
307B SER* 4.1 2.2 - - - -
309B HIS 2.8 27.7 + - - -
310B CYS 3.7 12.1 - - - -
311B PRO* 3.5 28.9 - - + -
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Residues in contact with ASN 68 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67B TRP* 1.3 86.6 - - - +
69B VAL* 1.3 56.8 + - - +
70B ASP* 3.1 7.4 + - - +
95B GLN* 3.1 20.8 + - + -
96B GLU* 2.9 41.1 + - - +
171B TYR* 3.2 17.6 - - - -
210B ASP* 3.1 22.6 + - - -
283B ASP* 4.1 14.4 + - - +
307B SER* 3.2 13.3 + - - -
309B HIS* 3.4 25.1 + - + +
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Residues in contact with VAL 69 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67B TRP* 3.4 18.4 - - + +
68B ASN* 1.3 74.6 - - - +
70B ASP* 1.3 72.4 + - - +
71B GLY 4.0 1.9 - - - +
72B LEU* 3.7 21.3 - - + +
75B TRP* 3.5 43.8 - - + +
94B LEU* 3.7 21.3 - - + -
95B GLN 2.6 15.2 + - - +
96B GLU 3.1 21.8 - - - +
97B THR* 4.0 3.8 - - - -
306B GLY 4.0 5.2 - - - +
307B SER* 3.3 15.4 + - - -
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Residues in contact with ASP 70 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68B ASN* 3.1 10.1 + - - +
69B VAL* 1.3 84.8 - - - +
71B GLY* 1.3 61.9 + - - +
74B ALA* 4.5 1.4 - - - +
75B TRP 4.9 0.2 + - - -
78B LYS* 4.5 2.4 + - - -
96B GLU* 3.1 27.7 + - - +
98B LYS* 2.8 24.6 + - - +
269B TYR* 3.3 27.5 + - - -
307B SER* 3.8 10.8 - - - +
308B ASP* 4.1 12.5 - - - +
5X C 6.0 1.6 + - - -
19Y T 5.6 2.1 - - - +
20Y A 3.6 23.1 - - - +
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Residues in contact with GLY 71 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B VAL* 4.0 2.0 - - - -
70B ASP* 1.3 71.4 - - - +
72B LEU* 1.3 55.7 + - - -
73B ARG 3.1 3.3 + - - -
74B ALA* 3.2 1.2 + - - +
75B TRP* 2.8 36.4 + - - +
96B GLU 2.8 12.1 + - - -
97B THR 3.4 7.4 - - - -
98B LYS* 3.1 13.0 - - - +
20Y A 3.7 2.2 - - - -
21Y G 3.0 20.6 - - - -
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Residues in contact with LEU 72 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B VAL* 3.7 11.5 - - + +
71B GLY* 1.3 71.7 - - - +
73B ARG* 1.3 53.9 + - - +
75B TRP* 3.4 34.7 - - + +
76B ILE* 2.8 51.1 + - + +
94B LEU* 4.0 16.4 - - + -
97B THR* 2.8 30.1 + - + +
99B CYS* 4.8 5.4 - - + -
104B LEU* 3.7 18.4 - - + -
105B PRO* 4.5 4.5 - - + -
108B LEU* 3.7 9.2 - - + -
119B TRP* 3.3 34.5 - - + -
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Residues in contact with ARG 73 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71B GLY 3.1 0.4 - - - -
72B LEU* 1.3 72.1 - - - +
74B ALA* 1.3 54.9 + - - +
76B ILE* 2.7 13.5 + - - +
77B LYS* 2.7 56.4 + - - +
97B THR 5.0 0.2 - - - -
98B LYS 2.6 31.1 + - - -
99B CYS* 3.2 33.6 - - - +
103B LYS* 3.3 37.7 - - - +
105B PRO* 3.9 20.2 - - + -
21Y G 3.8 23.0 + - - +
22Y C 3.1 27.1 + - - -
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Residues in contact with ALA 74 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B ASP 4.5 0.2 - - - +
71B GLY 3.2 5.5 + - - +
73B ARG* 1.3 76.5 - - - +
75B TRP* 1.3 51.2 + - - +
77B LYS* 3.3 15.5 + - - +
78B LYS* 2.8 59.7 + - - +
20Y A 3.4 21.1 - - - +
21Y G 3.4 22.9 + - - +
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Residues in contact with TRP 75 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67B TRP* 3.0 43.2 - + - -
69B VAL* 3.5 28.9 - - + +
71B GLY 2.8 18.1 + - - +
72B LEU* 3.4 37.7 - - + +
74B ALA* 1.3 74.9 - - - +
76B ILE* 1.3 70.4 + - + +
78B LYS* 3.1 17.9 + - - +
80B GLY* 3.0 33.2 + - - -
81B LEU* 3.7 21.1 - - + -
84B VAL* 3.4 33.2 - - + -
92B LEU* 4.1 1.1 - - + -
94B LEU* 3.7 23.8 - - + -
108B LEU* 5.6 0.2 - - + -
305B LEU 4.8 1.1 - - - -
306B GLY* 3.5 20.2 - - - +
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Residues in contact with ILE 76 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B LEU* 2.8 32.1 + - + +
73B ARG* 2.7 14.6 + - - +
75B TRP* 1.3 83.6 - - + +
77B LYS* 1.3 53.8 + - + +
79B LYS* 2.8 30.1 + - - +
80B GLY 3.5 3.9 + - - +
81B LEU* 3.6 34.1 + - + +
105B PRO* 3.9 19.5 - - + -
107B GLU* 4.1 28.3 - - + +
108B LEU* 3.8 23.6 - - + +
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Residues in contact with LYS 77 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A LYS* 6.4 2.2 - - - +
73B ARG* 2.7 40.4 + - - +
74B ALA* 3.3 14.4 - - - +
76B ILE* 1.3 70.7 - - + +
78B LYS* 1.3 57.5 + - + +
79B LYS* 2.9 24.4 + - - +
103B LYS* 5.4 9.2 - - - +
21Y G 4.4 10.9 + - - -
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Residues in contact with LYS 78 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B ASP* 4.5 4.0 + - - -
74B ALA* 2.8 38.0 + - - +
75B TRP 3.1 6.8 + - - +
77B LYS* 1.3 75.1 - - + +
79B LYS* 1.3 69.9 + - - +
80B GLY* 3.3 2.2 + - - -
269B TYR* 3.7 16.4 + - - -
305B LEU 5.6 1.4 - - - +
306B GLY* 3.8 37.4 + - - +
20Y A 2.9 45.6 + - - -
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Residues in contact with LYS 79 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76B ILE 2.8 13.8 + - - +
77B LYS* 2.9 13.9 + - - +
78B LYS* 1.3 81.1 - - - +
80B GLY* 1.3 63.2 + - - +
81B LEU 3.5 1.6 - - - +
82B ASP* 3.5 32.2 - - - +
83B TRP* 4.1 4.0 + - - +
107B GLU* 6.0 0.4 + - - -
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Residues in contact with GLY 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67B TRP* 5.1 2.2 - - - -
75B TRP* 3.0 43.5 + - - -
76B ILE 3.5 1.6 + - - -
78B LYS 3.3 1.7 - - - -
79B LYS* 1.3 73.2 - - - +
81B LEU* 1.3 54.2 + - - +
82B ASP 2.7 16.9 + - - -
83B TRP* 2.8 22.0 + - - +
84B VAL* 3.1 9.5 + - - +
305B LEU 5.6 1.8 - - - -
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Residues in contact with LEU 81 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B TRP* 3.7 25.7 - - + -
76B ILE* 3.6 40.5 - - + +
79B LYS* 3.5 0.8 - - - +
80B GLY* 1.3 73.3 - - - +
82B ASP* 1.3 56.4 + - - +
84B VAL* 3.5 13.5 - - + +
85B LYS* 2.9 39.6 + - - +
92B LEU* 4.9 3.1 - - + -
94B LEU* 6.0 0.2 - - + -
107B GLU* 3.9 27.1 - - + +
108B LEU* 4.1 13.7 - - + +
111B LEU* 3.6 30.7 - - + -
134B LEU* 5.8 0.4 - - + -
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Residues in contact with ASP 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79B LYS* 3.5 39.1 - - + +
80B GLY 2.7 4.8 + - - -
81B LEU* 1.3 72.3 - - - +
83B TRP* 1.3 66.2 + - - +
84B VAL 3.0 1.3 - - - -
85B LYS* 3.1 24.6 + - - +
86B GLU* 2.8 24.6 + - - +
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Residues in contact with TRP 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65B CYS* 4.0 14.6 - - + -
67B TRP* 3.7 19.7 - + + -
79B LYS 4.1 3.7 + - - +
80B GLY* 2.8 11.7 + - - +
82B ASP* 1.3 79.2 - - - +
84B VAL* 1.3 68.1 + - + +
86B GLU* 3.1 24.9 + - - +
87B GLU* 2.9 59.9 + - + +
89B PRO* 6.4 0.2 - - + -
92B LEU* 5.6 0.4 - - + -
301B ARG* 3.5 20.7 - - + +
304B ALA* 3.2 32.7 - - + +
305B LEU 5.5 0.4 - - - -
311B PRO* 3.2 37.2 - - + -
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Residues in contact with VAL 84 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67B TRP* 4.6 0.2 - - + -
75B TRP* 3.4 39.0 - - + -
80B GLY 3.1 4.5 + - - +
81B LEU* 3.5 17.3 - - + +
82B ASP 3.0 0.2 - - - -
83B TRP* 1.3 91.3 - - + +
85B LYS* 1.3 62.6 + - + +
86B GLU 2.9 1.1 - - - -
87B GLU* 2.7 22.3 + - - -
88B ALA 3.2 8.1 + - - -
89B PRO* 3.4 12.2 - - + +
92B LEU* 3.5 27.6 - - + -
111B LEU* 5.3 1.1 - - + -
114B LEU* 4.0 19.5 - - + -
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Residues in contact with LYS 85 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81B LEU* 2.9 28.2 + - - +
82B ASP* 3.1 24.3 + - - +
84B VAL* 1.3 80.7 - - - +
86B GLU* 1.3 61.4 + - - +
88B ALA* 3.5 13.4 + - - +
89B PRO* 5.5 0.7 - - - -
107B GLU* 5.9 0.6 - - - +
110B GLU* 3.4 24.3 + - - -
111B LEU* 3.6 30.5 - - + +
114B LEU* 6.3 0.4 - - - -
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Residues in contact with GLU 86 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B ASP 2.8 12.9 + - - +
83B TRP* 3.2 33.2 + - - +
85B LYS* 1.3 76.4 - - - +
87B GLU* 1.3 61.6 + - - +
88B ALA* 3.3 2.4 - - - +
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Residues in contact with GLU 87 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50B ASP* 4.9 0.3 - - - +
63B LYS* 2.8 59.3 + - - +
65B CYS* 5.0 2.8 - - + +
83B TRP* 2.9 45.9 + - + +
84B VAL 2.7 13.5 + - - +
86B GLU* 1.3 71.1 - - - +
88B ALA* 1.3 65.4 + - - +
89B PRO* 3.5 10.0 - - + +
301B ARG* 3.1 33.1 + - - -
313B THR* 3.3 16.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 88 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63B LYS* 3.8 14.1 - - + +
84B VAL 3.2 2.4 + - - -
85B LYS* 3.5 10.7 + - - +
86B GLU 3.3 3.2 - - - +
87B GLU* 1.3 81.7 - - - +
89B PRO* 1.3 73.2 - - - +
90B ASP* 3.7 5.5 + - - +
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Residues in contact with PRO 89 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63B LYS* 3.3 15.0 - - + +
65B CYS* 4.1 15.9 - - + +
83B TRP* 6.4 0.2 - - + -
84B VAL* 3.4 30.1 - - + +
85B LYS* 5.5 0.2 - - - -
87B GLU* 3.4 9.4 - - + +
88B ALA* 1.3 93.5 - - - +
90B ASP* 1.3 62.9 + - - +
91B ILE 3.6 18.4 - - - +
92B LEU* 4.4 16.8 - - + -
113B GLY 4.0 4.9 - - - +
114B LEU* 3.6 17.1 - - + +
136B ARG* 4.7 1.7 - - - +
----------------------------------------------------------
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Residues in contact with ASP 90 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61B THR 3.8 4.9 - - - +
62B LEU* 3.3 29.1 - - + +
63B LYS* 2.7 40.9 + - - +
88B ALA 4.4 3.5 - - - +
89B PRO* 1.3 74.9 - - - +
91B ILE* 1.3 64.1 + - + +
114B LEU* 4.1 1.3 - - - -
135B SER* 3.6 0.3 + - - -
136B ARG* 2.4 62.2 + - + +
137B GLN* 5.6 4.3 - - - +
----------------------------------------------------------
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Residues in contact with ILE 91 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B LEU* 4.9 6.7 - - + -
63B LYS 3.8 1.4 + - - -
64B ILE* 3.4 22.3 - - + +
65B CYS 3.1 26.0 + - - +
89B PRO* 3.2 5.9 - - - +
90B ASP* 1.3 92.1 - - + +
92B LEU* 1.3 62.9 + - - +
93B CYS* 4.2 4.0 - - - -
133B LEU* 3.5 39.5 - - + -
134B LEU 3.0 5.4 - - - +
135B SER* 3.5 8.7 - - - +
162B PHE* 3.9 27.8 - - + -
165B PHE* 4.8 6.7 - - + -
167B LEU* 4.0 21.5 - - + -
----------------------------------------------------------
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Residues in contact with LEU 92 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65B CYS* 3.4 38.8 - - + +
67B TRP* 5.1 2.2 - - + -
75B TRP* 4.1 4.0 - - + -
81B LEU* 4.9 2.2 - - + -
83B TRP* 5.6 0.2 - - + -
84B VAL* 3.5 41.3 - - + -
89B PRO* 4.4 7.2 - - + -
91B ILE* 1.3 74.4 - - - +
93B CYS* 1.3 62.6 + - - +
94B LEU* 3.5 33.0 - - + -
114B LEU* 4.3 12.6 - - + -
133B LEU* 3.3 1.4 - - - -
134B LEU* 2.7 57.7 + - + +
----------------------------------------------------------
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Residues in contact with CYS 93 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64B ILE* 4.3 4.3 - - - -
65B CYS 2.8 14.0 + - - +
66B SER* 3.1 18.5 - - - +
67B TRP 2.6 33.1 + - - -
91B ILE* 4.2 4.9 - - - -
92B LEU* 1.3 74.1 - - - +
94B LEU* 1.3 60.0 + - - +
95B GLN* 3.9 1.1 - - - -
132B GLY 3.3 4.5 - - - -
133B LEU* 4.2 9.2 - - - -
167B LEU* 4.1 19.7 - - - -
169B THR* 3.4 21.8 - - - +
208B CYS* 3.5 21.3 - - - -
----------------------------------------------------------
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Residues in contact with LEU 94 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67B TRP* 3.1 11.2 - - + +
69B VAL* 3.7 16.8 - - + -
72B LEU* 4.0 23.1 - - + -
75B TRP* 3.7 20.9 - - + -
81B LEU* 6.0 0.2 - - + -
92B LEU* 3.5 34.5 - - + -
93B CYS* 1.3 75.8 - - - +
95B GLN* 1.3 64.1 + - - +
97B THR* 3.6 11.4 - - + +
108B LEU* 5.3 1.3 - - + -
119B TRP* 4.3 9.6 - - + -
131B VAL* 3.2 6.3 - - - -
132B GLY 2.7 37.4 + - - +
134B LEU* 3.6 27.6 - - + -
----------------------------------------------------------
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Residues in contact with GLN 95 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66B SER* 2.7 23.6 + - - -
67B TRP* 2.9 28.4 + - - +
68B ASN* 3.1 17.8 + - + -
69B VAL* 2.6 32.9 + - - +
93B CYS* 3.8 4.0 - - - +
94B LEU* 1.3 72.8 - - - +
96B GLU* 1.3 64.9 + - - +
131B VAL* 3.5 12.6 - - + -
169B THR* 2.9 24.9 + - - -
170B ALA 3.4 21.5 - - - +
171B TYR* 3.9 11.2 - - + -
209B GLY* 3.1 12.7 - - - -
210B ASP 3.6 8.7 - - - +
283B ASP* 4.6 0.9 - - - +
----------------------------------------------------------
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Residues in contact with GLU 96 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68B ASN* 2.9 35.3 + - - +
69B VAL* 3.1 0.9 - - - +
70B ASP* 3.1 17.7 + - - +
71B GLY 2.8 28.1 + - - -
95B GLN* 1.3 68.6 - - - +
97B THR* 1.3 55.2 + - - +
98B LYS* 3.4 25.6 + - + +
129B SER* 3.6 11.6 + - - -
130B GLY 2.9 12.7 + - - -
131B VAL* 4.1 1.6 - - - +
171B TYR* 3.3 35.4 + - + -
308B ASP* 5.5 0.7 - - - +
309B HIS* 5.0 1.7 + - - -
5X C 3.2 30.9 + - - +
6X 3DR 4.3 0.9 + - - -
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Residues in contact with THR 97 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B VAL* 4.0 1.6 - - - -
71B GLY* 3.4 1.2 - - - -
72B LEU* 2.8 45.5 + - + +
73B ARG* 5.0 0.2 + - - -
94B LEU* 3.6 24.9 - - + +
96B GLU* 1.3 72.3 - - - +
98B LYS* 1.3 78.9 + - - +
99B CYS* 3.3 12.0 + - - +
119B TRP* 4.0 20.2 - - + -
120B SER 4.8 1.2 + - - -
121B ALA* 5.5 1.0 - - - +
130B GLY* 2.8 29.6 + - - +
131B VAL 3.8 14.7 + - - +
132B GLY 4.0 1.1 - - - +
21Y G 4.6 0.5 + - - -
----------------------------------------------------------
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Residues in contact with LYS 98 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B ASP* 2.8 33.9 + - - +
71B GLY* 3.1 25.4 - - - +
73B ARG* 2.6 25.5 + - - -
96B GLU* 3.9 18.3 + - - +
97B THR* 1.3 83.5 + - - +
99B CYS* 1.3 48.4 + - - +
127B GLY* 3.5 35.8 - - - +
128B TYR* 4.2 10.3 - - - +
129B SER* 2.9 30.7 + - - +
20Y A 4.2 16.4 + - - -
21Y G 3.9 17.7 + - - +
----------------------------------------------------------
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Residues in contact with CYS 99 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B LEU* 4.8 6.1 - - + -
73B ARG* 3.2 36.1 - - - +
97B THR* 3.3 13.9 + - - +
98B LYS* 1.3 78.3 - - - +
100B SER* 1.3 81.3 + - - +
103B LYS* 3.4 23.3 - - - -
104B LEU* 4.0 17.0 - - + -
105B PRO* 4.4 1.3 - - - -
121B ALA* 3.7 21.1 - - - +
127B GLY 5.9 0.4 - - - +
22Y C 6.0 0.4 - - - -
----------------------------------------------------------
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Residues in contact with SER 100 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B CYS* 1.3 82.8 - - - +
101B GLU* 1.3 60.0 + - - +
102B ASN* 3.2 16.9 + - - +
103B LYS* 2.7 38.0 + - - +
104B LEU* 2.8 15.8 + - - +
121B ALA* 5.1 4.3 - - - -
126B GLU* 5.0 12.3 - - - -
----------------------------------------------------------
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Residues in contact with GLU 101 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106A ALA* 4.8 2.4 - - - +
109A GLN* 6.0 0.2 + - - -
100B SER* 1.3 71.8 - - - +
102B ASN* 1.3 59.9 + - - +
103B LYS 2.8 10.0 + - - -
104B LEU* 2.9 38.4 + - + +
119B TRP* 4.2 30.1 + - + +
----------------------------------------------------------
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Residues in contact with ASN 102 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106A ALA* 3.2 19.6 - - - +
107A GLU* 4.4 19.3 + - + +
110A GLU* 4.1 17.9 - - - +
100B SER* 3.0 11.9 + - - +
101B GLU* 1.3 81.0 - - - +
103B LYS* 1.3 57.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 103 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A LYS* 3.9 26.3 - - - +
106A ALA* 4.1 7.9 - - + +
73B ARG* 3.3 44.9 - - - +
77B LYS* 5.4 9.0 - - - +
99B CYS* 3.4 15.9 - - - -
100B SER* 2.7 18.6 + - - +
102B ASN* 1.3 80.2 - - - +
104B LEU* 1.3 64.5 + - - +
105B PRO* 3.1 12.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 104 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106A ALA* 4.4 5.0 - - - +
109A GLN* 4.2 15.8 + - - -
72B LEU* 3.7 30.3 - - + -
99B CYS* 4.0 9.2 - - + -
100B SER 2.8 17.7 + - - +
101B GLU* 2.9 28.9 + - + +
103B LYS* 1.3 75.6 - - - +
105B PRO* 1.3 70.6 - - - +
108B LEU* 3.7 10.8 - - + -
119B TRP* 3.6 47.1 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il