Contacts of the helix formed by residues 53 - 80 (chain A) in PDB entry 1FFT


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASP 53 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  VAL*     1.3    79.7    -      -       -      +
     54A  HIS*     1.3    78.2    +      -       -      +
     55A  LYS*     2.7    34.0    +      -       -      +
     56A  ARG*     2.8    50.4    +      -       +      +
     57A  LEU*     3.0    19.7    +      -       -      +
    135A  ASP*     3.6     9.3    -      -       -      +
    549A  PHE      5.1     7.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 54 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  VAL      4.0     2.4    +      -       -      -
     53A  ASP*     1.3    79.1    +      -       -      +
     55A  LYS*     1.3    90.9    +      -       +      +
     57A  LEU*     3.0     1.9    +      -       -      -
     58A  GLY      2.8    19.2    +      -       -      -
    124A  ASN*     3.0    22.2    +      -       -      +
    125A  LEU*     5.2     0.9    -      -       -      -
    128A  PRO*     3.2    41.0    -      -       +      +
    129A  LEU*     4.2     1.0    -      -       -      +
    135A  ASP*     2.4    46.6    +      -       -      +
    136A  VAL*     4.2    21.8    -      -       +      +
    142A  ASN*     3.9    20.0    -      -       -      +
    208A  PHE*     5.4     1.3    -      -       +      -
    551A  ASN*     2.9    24.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 55 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53A  ASP*     2.7    27.6    +      -       -      +
     54A  HIS*     1.3    93.8    -      -       +      +
     56A  ARG*     1.3    64.5    +      -       -      +
     58A  GLY*     2.9    22.3    +      -       -      -
     59A  ILE*     3.3    12.8    -      -       +      +
    124A  ASN      4.3     3.1    -      -       -      -
    125A  LEU*     3.5    17.2    -      -       +      +
    129A  LEU*     3.7    23.8    -      -       +      -
    547A  PRO*     3.5    18.9    +      -       +      +
    548A  PRO      3.5     3.4    +      -       -      -
    549A  PHE*     4.2     3.8    +      -       -      +
    551A  ASN*     2.4    61.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 56 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  VAL      5.8     2.5    -      -       -      +
     53A  ASP*     2.8    36.8    +      -       +      +
     55A  LYS*     1.3    81.2    -      -       -      +
     57A  LEU*     1.3    60.5    +      -       -      +
     59A  ILE*     3.2    18.7    +      -       +      +
     60A  MET*     2.8    31.5    +      -       +      +
    549A  PHE*     3.9    48.1    +      -       -      +
    550A  TYR*     6.0     1.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 57 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  VAL      4.8    11.9    -      -       -      +
     53A  ASP      3.0    20.6    +      -       -      +
     54A  HIS*     3.4     5.6    -      -       -      +
     56A  ARG*     1.3    72.9    -      -       -      +
     58A  GLY*     1.3    67.2    +      -       -      +
     60A  MET*     2.5    51.8    +      -       +      +
     61A  TYR*     2.9    11.9    +      -       +      -
    124A  ASN*     2.9    13.7    -      -       -      +
    142A  ASN*     3.2    27.6    -      -       -      +
    143A  ASN*     3.4    40.8    -      -       +      +
    146A  PHE*     4.6    14.1    -      -       +      -
    147A  TRP*     5.6     0.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 58 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     54A  HIS      2.8     4.0    +      -       -      -
     55A  LYS      2.9     8.5    +      -       -      -
     57A  LEU*     1.3    78.2    -      -       -      +
     59A  ILE*     1.3    63.7    +      -       -      +
     61A  TYR*     2.9    11.8    +      -       -      +
     62A  ILE*     3.1    18.4    -      -       -      +
    121A  GLY      3.8     7.1    -      -       -      +
    124A  ASN*     2.5    21.1    -      -       -      +
    125A  LEU*     3.7    16.6    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 59 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55A  LYS*     3.3    26.0    +      -       +      +
     56A  ARG*     3.2    23.9    +      -       +      +
     58A  GLY*     1.3    71.2    -      -       -      +
     60A  MET*     1.3    56.4    +      -       -      +
     61A  TYR      2.6    14.4    +      -       -      -
     62A  ILE*     2.8    26.3    +      -       +      -
     63A  ILE*     3.0    31.8    +      -       +      +
    125A  LEU*     3.4    19.3    -      -       +      +
    440A  TRP*     6.1     0.2    -      -       +      -
    443A  ALA*     4.6    12.1    -      -       +      +
    444A  PHE*     4.2    34.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 60 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  VAL      6.1     1.6    -      -       -      +
     56A  ARG*     2.8    26.3    +      -       +      +
     57A  LEU*     2.5    43.5    +      -       +      +
     59A  ILE*     1.3    74.6    -      -       -      +
     61A  TYR*     1.3    62.3    +      -       +      +
     63A  ILE*     3.5    21.0    -      -       -      +
     64A  VAL*     3.3    16.6    -      -       -      +
    146A  PHE*     3.7    22.4    -      -       +      -
    147A  TRP*     5.3    14.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 61 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     57A  LEU*     2.9    26.6    +      -       +      -
     58A  GLY      2.9     9.5    +      -       -      +
     59A  ILE      2.6     4.4    +      -       -      -
     60A  MET*     1.3    68.0    -      -       -      +
     62A  ILE*     1.3    70.9    +      -       -      +
     63A  ILE      2.9     1.3    -      -       -      -
     64A  VAL*     2.5    25.7    +      -       -      +
     65A  ALA      3.3     2.5    +      -       -      -
    117A  PRO*     3.7    25.4    -      -       +      +
    120A  ILE*     3.2    56.4    +      -       +      +
    121A  GLY*     3.6    13.5    -      -       -      -
    124A  ASN*     4.1    12.8    +      -       -      -
    142A  ASN      4.9     1.3    +      -       -      -
    145A  SER*     3.5     8.1    +      -       -      -
    146A  PHE*     3.1    63.0    +      +       +      +
    149A  THR*     5.1     7.9    -      -       +      -
    204A  THR*     4.3     0.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 62 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58A  GLY      3.1    23.8    -      -       -      +
     59A  ILE*     2.8    14.8    +      -       +      +
     61A  TYR*     1.3    80.5    -      -       +      +
     63A  ILE*     1.3    66.9    +      -       +      +
     65A  ALA*     3.0    12.1    +      -       +      +
     66A  ILE*     2.8    31.7    +      -       +      +
    117A  PRO*     5.1     1.9    -      -       -      +
    118A  PHE*     5.8     2.5    -      -       -      +
    121A  GLY*     4.4    15.5    -      -       -      -
    122A  LEU*     4.7    12.3    -      -       +      +
    125A  LEU*     5.7     4.0    -      -       +      -
    432A  CYS*     6.0     4.7    -      -       -      -
    436A  MET*     3.8    28.7    -      -       +      -
    440A  TRP*     5.1    11.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 63 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59A  ILE*     3.0    30.1    +      -       +      +
     60A  MET*     3.5    23.3    -      -       -      +
     61A  TYR      2.5     4.4    +      -       -      -
     62A  ILE*     1.3    75.8    -      -       +      +
     64A  VAL*     1.3    68.0    +      -       +      +
     66A  ILE*     3.0     4.5    +      -       -      +
     67A  VAL*     2.8    42.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 64 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60A  MET      3.3    16.6    -      -       -      +
     61A  TYR*     2.5    11.3    +      -       -      +
     63A  ILE*     1.3    73.9    -      -       +      +
     65A  ALA*     1.3    63.3    +      -       -      +
     67A  VAL*     3.4     5.7    +      -       -      +
     68A  MET*     2.8    32.9    +      -       +      +
    113A  PHE*     4.5    12.3    -      -       +      +
    117A  PRO*     5.2     5.6    -      -       +      -
    146A  PHE*     3.4    28.7    -      -       +      -
    149A  THR*     6.3     2.9    -      -       +      -
    150A  VAL*     5.3     3.1    -      -       +      -
    153A  VAL*     4.5    23.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 65 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61A  TYR      3.3     1.4    +      -       -      -
     62A  ILE*     3.0    15.3    +      -       +      +
     64A  VAL*     1.3    78.9    -      -       -      +
     66A  ILE*     1.3    57.2    +      -       +      +
     68A  MET*     2.9     3.4    +      -       -      -
     69A  LEU*     2.7    34.0    +      -       +      +
    113A  PHE      4.5     1.8    -      -       -      -
    114A  VAL*     2.9    41.7    -      -       +      +
    117A  PRO*     4.2    15.6    -      -       +      +
    118A  PHE      5.7     0.4    -      -       -      +
    432A  CYS*     6.2     3.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 66 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62A  ILE*     2.8    33.2    +      -       +      +
     63A  ILE*     3.5     8.1    -      -       -      +
     65A  ALA*     1.3    75.2    -      -       +      +
     67A  VAL*     1.3    69.4    +      -       +      +
     68A  MET      3.1     0.5    +      -       -      -
     69A  LEU*     3.2    22.1    +      -       +      +
     70A  LEU*     3.2    12.6    +      -       +      +
    432A  CYS*     6.0     2.9    -      -       -      -
    433A  PHE*     5.1    11.7    -      -       +      -
    436A  MET*     4.2    19.7    -      -       +      -
    512A  LEU*     5.6     1.1    -      -       +      -
    513A  VAL*     4.9    17.0    -      -       +      -
    516A  MET*     4.6    24.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 67 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63A  ILE*     2.8    42.4    +      -       +      +
     64A  VAL*     3.8     5.4    -      -       -      +
     66A  ILE*     1.3    76.7    -      -       +      +
     68A  MET*     1.3    57.2    +      -       -      +
     70A  LEU*     3.2    30.1    -      -       +      +
     71A  ARG*     3.9     3.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 68 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  VAL*     2.8    23.3    +      -       +      +
     65A  ALA*     3.3     3.4    -      -       -      +
     67A  VAL*     1.3    74.7    -      -       -      +
     69A  LEU*     1.3    53.2    +      -       -      +
     70A  LEU      2.9     5.4    -      -       -      -
     71A  ARG*     2.6    34.3    +      -       +      +
     72A  GLY*     2.8    12.7    +      -       -      +
    109A  ILE*     3.8    11.2    -      -       +      -
    113A  PHE*     3.5    33.0    -      -       +      +
    114A  VAL*     3.4    27.9    -      -       +      +
    153A  VAL*     3.3    36.6    -      -       +      +
    156A  VAL*     6.0     3.6    -      -       +      -
    157A  ASN*     5.3     7.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 69 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     65A  ALA*     2.7    15.5    +      -       +      +
     66A  ILE*     3.2    15.5    +      -       +      +
     68A  MET*     1.3    68.0    -      -       -      +
     70A  LEU*     1.3    58.2    +      -       -      +
     71A  ARG      2.9     5.8    -      -       -      -
     72A  GLY*     3.9     2.0    -      -       -      +
     73A  PHE*     3.0    75.3    +      -       +      +
    110A  MET*     3.5    35.0    -      -       +      -
    114A  VAL*     3.2    26.0    -      -       +      +
    429A  VAL*     5.7     7.0    -      -       +      -
    433A  PHE*     5.6     9.0    -      -       +      -
    509A  ILE*     5.5     2.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 70 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66A  ILE      3.2    10.1    +      -       -      +
     67A  VAL*     3.2    23.3    -      -       +      +
     69A  LEU*     1.3    79.5    -      -       -      +
     71A  ARG*     1.3    57.6    +      -       +      +
     73A  PHE*     5.1     1.1    -      -       -      +
     74A  ALA*     3.3    20.9    +      -       +      +
    509A  ILE*     6.0     4.3    -      -       -      -
    513A  VAL*     6.1     5.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 71 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67A  VAL      4.6     2.2    -      -       -      +
     68A  MET*     2.6    21.7    +      -       +      +
     70A  LEU*     1.3    81.4    -      -       +      +
     72A  GLY*     1.3    55.2    +      -       -      +
     73A  PHE      3.4     0.2    -      -       -      -
     74A  ALA*     3.3     5.0    -      -       -      +
     75A  ASP*     2.7    73.4    +      -       -      +
    109A  ILE*     5.3     5.6    -      -       +      -
    157A  ASN*     5.7     5.5    +      -       -      +
    160A  LEU*     6.0     3.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 72 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68A  MET*     2.8    16.8    +      -       -      +
     69A  LEU*     4.7     1.8    -      -       -      -
     71A  ARG*     1.3    69.1    -      -       -      +
     73A  PHE*     1.3    70.7    +      -       -      +
     75A  ASP*     2.8    14.5    +      -       -      +
     76A  ALA*     2.8    20.3    +      -       -      +
    106A  HIS*     4.5     6.1    +      -       -      -
    109A  ILE*     5.1    14.8    -      -       -      +
    110A  MET*     4.2    15.7    -      -       -      -
    114A  VAL*     5.9     1.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 73 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69A  LEU*     3.0    62.9    +      -       +      +
     70A  LEU*     5.1     0.4    -      -       -      -
     72A  GLY*     1.3    74.2    -      -       -      +
     74A  ALA*     1.3    69.9    +      -       -      +
     76A  ALA*     2.8     2.6    +      -       +      +
     77A  ILE*     2.5    49.1    +      -       +      +
    110A  MET*     4.0    14.4    -      -       +      +
    429A  VAL*     5.7     2.9    -      -       +      -
    433A  PHE*     6.2     0.2    -      +       -      -
    460A  TRP*     3.7    17.3    -      +       -      -
    505A  ILE*     4.9     3.8    -      -       +      -
    506A  ALA*     6.3     0.2    -      -       -      -
    509A  ILE*     3.5    44.2    -      -       +      -
   1001A  HEM      3.6    33.9    -      +       +      -
----------------------------------------------------------
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Residues in contact with ALA 74 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70A  LEU*     3.3    22.9    +      -       +      +
     71A  ARG*     3.3     9.1    +      -       -      +
     73A  PHE*     1.3    79.2    -      -       -      +
     75A  ASP*     1.3    70.8    +      -       -      +
     77A  ILE*     3.3    11.3    +      -       -      +
     78A  MET*     3.0    20.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 75 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     71A  ARG*     2.7    76.3    +      -       -      +
     72A  GLY*     2.8    15.5    +      -       -      +
     74A  ALA*     1.3    77.7    -      -       -      +
     76A  ALA*     1.3    57.9    +      -       -      +
     78A  MET*     3.1    16.1    +      -       -      +
     79A  MET*     3.2    24.3    +      -       +      +
    102A  ILE*     4.8    10.2    -      -       +      +
    106A  HIS*     5.7     4.2    -      -       +      +
    109A  ILE*     4.5     9.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 76 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72A  GLY      2.8    10.3    +      -       -      +
     73A  PHE*     2.8     8.4    +      -       +      +
     75A  ASP*     1.3    68.5    -      -       -      +
     77A  ILE*     1.3    65.3    +      -       +      +
     78A  MET      2.6     7.2    +      -       -      -
     79A  MET*     3.1    15.4    +      -       +      +
     80A  ARG*     3.0    27.3    +      -       -      +
    103A  PHE*     4.4     7.9    -      -       +      -
    106A  HIS*     3.3    35.7    -      -       +      +
   1001A  HEM      4.6    14.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 77 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     73A  PHE*     2.5    62.1    +      -       +      +
     74A  ALA*     3.5     9.6    -      -       -      +
     76A  ALA*     1.3    71.2    -      -       +      +
     78A  MET*     1.3    60.2    -      -       -      +
     80A  ARG*     4.4     9.9    +      -       -      +
     81A  SER*     4.7     3.1    +      -       -      -
    502A  ALA*     6.0     8.3    -      -       +      -
    506A  ALA*     4.0    37.5    -      -       +      +
    509A  ILE*     5.7     3.1    -      -       +      -
    510A  LEU*     6.3     2.2    -      -       +      -
   1001A  HEM      5.7     6.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET 78 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     74A  ALA      3.0    10.5    +      -       -      +
     75A  ASP*     3.2    11.0    -      -       -      +
     76A  ALA      2.6     4.9    +      -       -      -
     77A  ILE*     1.3    72.5    -      -       -      +
     79A  MET*     1.3    68.4    +      -       -      +
     80A  ARG      3.2     1.3    -      -       -      -
     81A  SER*     3.1    23.9    +      -       -      -
     93A  PHE*     5.7    11.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 79 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     75A  ASP*     3.3     9.0    -      -       +      +
     76A  ALA*     3.2    33.9    -      -       +      +
     78A  MET*     1.3    74.2    -      -       -      +
     80A  ARG*     1.3    53.8    +      -       -      +
     81A  SER      2.5    18.2    +      -       -      -
     82A  GLN*     3.1    21.0    +      -       -      +
     83A  GLN*     4.7     0.5    +      -       -      -
     99A  TYR*     5.1     7.5    -      -       +      -
    102A  ILE*     3.1    36.3    -      -       +      -
    103A  PHE*     2.9    72.5    -      -       +      +
    106A  HIS*     4.0     8.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 80 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76A  ALA      3.0    17.7    +      -       -      +
     77A  ILE*     4.4     7.6    -      -       -      +
     78A  MET      3.2     0.4    -      -       -      -
     79A  MET*     1.3    74.5    -      -       -      +
     81A  SER*     1.3    61.9    +      -       -      +
     83A  GLN*     4.0    22.3    +      -       -      +
    103A  PHE*     3.3    16.2    -      -       +      -
    414A  LEU*     6.0     0.2    -      -       -      +
    467A  ALA*     2.5    34.4    +      -       -      +
    468A  PHE*     3.7    13.3    -      -       -      -
    471A  LEU*     4.1    18.6    -      -       -      +
    495A  LEU*     5.5     1.0    -      -       -      +
    498A  ALA*     3.4    20.7    +      -       -      +
    499A  ALA*     3.7    33.9    -      -       -      +
    502A  ALA*     5.1    12.2    -      -       +      +
   1001A  HEM      3.2    38.1    -      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il