Contacts of the helix formed by residues 430 - 460 (chain D) in PDB entry 1FM9


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLN 430 (chain D).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    394A  GLU*     4.6    16.6    -      -       +      +
    397A  TYR*     3.3    31.2    -      -       +      +
    398A  ALA*     3.6    27.2    -      -       +      +
    401A  GLU*     3.8    18.6    +      -       -      +
    415A  PHE*     4.5     2.1    -      -       -      -
    428D  SER      3.9     0.6    +      -       -      -
    429D  SER*     1.3    79.2    -      -       -      +
    431D  LEU*     1.3    59.1    +      -       -      +
    432D  PHE*     3.3     2.9    -      -       -      +
    433D  ALA*     3.4    13.7    +      -       +      +
    434D  LYS*     2.9    37.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 431 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    377D  LEU*     3.3    50.5    -      -       +      +
    379D  LEU*     5.4     3.8    -      -       +      -
    421D  LEU*     3.7    29.6    -      -       +      +
    425D  HIS*     3.6    30.1    -      -       +      +
    428D  SER*     3.3    36.2    +      -       -      +
    429D  SER      2.9     4.4    +      -       -      +
    430D  GLN*     1.3    75.2    -      -       -      +
    432D  PHE*     1.3    61.7    +      -       -      +
    434D  LYS*     3.3     6.3    +      -       +      +
    435D  LEU*     2.8    32.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 432 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    401A  GLU*     5.7     1.8    -      -       -      -
    415A  PHE*     4.6    17.7    -      +       +      -
    416A  ALA*     3.8    21.3    -      -       +      -
    414D  LEU*     3.7    33.9    -      -       +      -
    417D  LEU*     4.0    18.2    -      -       +      -
    418D  GLU*     3.9    41.1    -      -       +      +
    421D  LEU*     3.6    22.2    -      -       +      +
    430D  GLN*     3.3     0.6    -      -       -      -
    431D  LEU*     1.3    77.4    -      -       -      +
    433D  ALA*     1.3    64.0    +      -       -      +
    435D  LEU*     3.1     3.7    +      -       -      +
    436D  LEU*     3.0    54.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 433 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    397A  TYR*     3.7    26.4    +      -       +      -
    415A  PHE*     4.0    10.5    -      -       +      -
    419A  LEU*     3.8    23.5    -      -       +      +
    430D  GLN*     3.4    27.6    +      -       -      +
    431D  LEU      3.3     0.4    -      -       -      -
    432D  PHE*     1.3    82.3    -      -       -      +
    434D  LYS*     1.3    61.4    +      -       -      +
    436D  LEU*     3.4     2.3    +      -       -      +
    437D  GLN*     3.1    23.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 434 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    390A  GLU*     4.4     5.4    -      -       -      +
    394A  GLU*     3.2    38.7    +      -       -      +
    397A  TYR*     4.2    16.1    -      -       +      -
    377D  LEU*     3.8    29.7    -      -       +      +
    428D  SER*     6.3     0.8    -      -       -      -
    429D  SER*     3.7    19.3    +      -       -      +
    430D  GLN*     2.9    25.0    +      -       +      +
    431D  LEU*     3.7     7.1    -      -       +      +
    433D  ALA*     1.3    77.1    -      -       -      +
    435D  LEU*     1.3    60.3    +      -       -      +
    437D  GLN*     3.6    15.0    -      -       -      +
    438D  LYS*     3.6    17.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 435 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    374D  PHE*     3.7    26.0    -      -       +      -
    377D  LEU*     4.1    12.1    -      -       +      +
    379D  LEU*     3.6    30.5    -      -       +      -
    387D  PHE*     3.6    36.5    -      -       +      -
    417D  LEU*     4.0    23.1    -      -       +      -
    421D  LEU*     4.0    15.3    -      -       +      -
    431D  LEU*     2.8    19.0    +      -       +      +
    432D  PHE      3.1     5.1    +      -       -      +
    434D  LYS*     1.3    73.7    -      -       -      +
    436D  LEU*     1.3    66.7    +      -       +      +
    437D  GLN      3.1     1.6    -      -       -      -
    438D  LYS*     2.9    20.9    +      -       +      +
    439D  MET      3.8     1.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 436 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    416A  ALA*     3.9    21.5    -      -       +      +
    419A  LEU*     4.3    24.7    -      -       +      +
    420A  LEU*     4.3    11.1    -      -       +      +
    387D  PHE*     5.1     2.0    -      -       +      -
    390D  VAL*     4.8     2.0    -      -       +      -
    414D  LEU*     3.7    24.5    -      -       +      -
    417D  LEU*     4.8     7.6    -      -       +      -
    432D  PHE*     3.0    56.0    +      -       +      +
    433D  ALA      4.0     3.6    -      -       -      +
    435D  LEU*     1.3    76.1    -      -       +      +
    437D  GLN*     1.3    62.6    +      -       -      +
    439D  MET*     2.9    42.9    +      -       -      +
    440D  THR*     4.0     4.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 437 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    373A  ILE*     3.5    26.7    -      -       -      +
    393A  ARG*     3.5    27.3    +      -       -      +
    397A  TYR*     2.8    34.5    +      -       -      +
    419A  LEU*     5.5     2.8    -      -       -      +
    422A  LEU*     3.9    13.2    -      -       -      +
    426A  ARG*     5.5     2.6    +      -       -      -
    433D  ALA      3.1     8.9    +      -       -      +
    434D  LYS*     3.6    11.9    -      -       -      +
    435D  LEU      3.1     0.4    -      -       -      -
    436D  LEU*     1.3    78.2    -      -       -      +
    438D  LYS*     1.3    64.4    +      -       +      +
    440D  THR*     2.7    54.9    +      -       -      +
    441D  ASP*     3.3    12.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 438 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    379A  ASP*     5.3     1.6    +      -       -      -
    370D  PHE*     4.1    14.9    -      -       +      -
    373D  LYS*     3.6    48.0    +      -       -      +
    374D  PHE*     3.7    32.1    -      -       +      +
    377D  LEU*     4.5    10.5    -      -       +      -
    387D  PHE*     4.7     0.9    -      -       +      -
    434D  LYS*     3.6    17.7    -      -       -      +
    435D  LEU      2.9    12.3    +      -       -      +
    437D  GLN*     1.3    79.5    -      -       +      +
    439D  MET*     1.3    56.3    +      -       -      +
    440D  THR      3.1     0.4    -      -       -      -
    441D  ASP*     3.1    26.5    +      -       -      +
    442D  LEU*     2.8    38.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with MET 439 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    420A  LEU*     3.6    26.7    -      -       +      -
    423A  PRO*     4.0    14.8    -      -       +      +
    324D  GLU*     5.0     6.4    -      -       -      +
    387D  PHE*     3.6    34.1    -      -       +      -
    390D  VAL*     4.1    13.9    -      -       +      +
    391D  ILE*     3.9    33.4    -      -       +      -
    394D  SER*     4.0    12.6    -      -       -      +
    410D  GLN*     4.7     2.2    -      -       -      +
    436D  LEU*     2.9    24.4    +      -       -      +
    438D  LYS*     1.3    77.7    -      -       -      +
    440D  THR*     1.3    59.9    +      -       -      +
    442D  LEU*     3.6    10.2    +      -       -      +
    443D  ARG*     3.5    24.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 440 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    419A  LEU      4.5     1.8    -      -       -      +
    422A  LEU*     3.3    24.0    -      -       +      -
    423A  PRO*     3.1    43.5    -      -       +      -
    426A  ARG*     3.7    23.4    +      -       -      +
    436D  LEU      4.4     5.2    -      -       -      +
    437D  GLN*     2.7    35.8    +      -       -      +
    439D  MET*     1.3    75.1    -      -       -      +
    441D  ASP*     1.3    69.5    +      -       -      +
    442D  LEU      3.2     0.2    -      -       -      -
    443D  ARG*     3.3    16.3    +      -       -      +
    444D  GLN*     3.6     3.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 441 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    379A  ASP*     4.1    17.9    -      -       -      +
    393A  ARG*     5.3     2.4    +      -       -      -
    426A  ARG*     4.8     9.1    +      -       -      +
    370D  PHE*     4.3    14.6    -      -       +      -
    373D  LYS*     5.5     1.2    -      -       -      +
    437D  GLN*     3.6    17.7    -      -       -      +
    438D  LYS*     3.1    39.5    +      -       -      +
    440D  THR*     1.3    90.7    +      -       -      +
    442D  LEU*     1.3    63.1    +      -       -      +
    444D  GLN*     3.0    18.6    +      -       -      +
    445D  ILE*     3.2    16.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 442 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    324D  GLU*     3.7    39.5    -      -       +      +
    327D  TYR*     4.0    13.5    -      -       +      -
    328D  THR*     3.5    15.9    -      -       -      +
    370D  PHE*     3.4    36.8    -      -       +      -
    387D  PHE*     4.6     8.7    -      -       +      -
    391D  ILE*     4.6     4.7    -      -       +      -
    438D  LYS*     2.8    32.7    +      -       +      +
    439D  MET*     3.6    11.9    -      -       -      +
    441D  ASP*     1.3    76.3    -      -       -      +
    443D  ARG*     1.3    63.5    +      -       -      +
    445D  ILE*     3.1     9.7    +      -       +      +
    446D  VAL*     3.0    28.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 443 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    348A  ARG*     4.9     2.2    -      -       -      +
    352A  GLU*     4.9     1.8    +      -       -      -
    423A  PRO*     3.3    43.4    +      -       +      +
    424A  ALA*     3.4     4.9    -      -       -      +
    426A  ARG*     4.4     4.3    -      -       +      -
    427A  SER*     3.1    34.0    +      -       -      -
    430A  LEU*     4.7     0.7    -      -       -      -
    324D  GLU*     3.0    31.6    +      -       -      -
    394D  SER*     5.0     1.4    -      -       -      -
    396D  ASP*     2.6    40.4    +      -       -      -
    397D  ARG*     3.3    15.4    -      -       -      +
    439D  MET      3.5    12.4    +      -       -      +
    440D  THR      3.6     6.5    -      -       -      +
    441D  ASP      3.3     1.2    -      -       -      -
    442D  LEU*     1.3    77.7    -      -       -      +
    444D  GLN*     1.3    57.5    +      -       -      +
    446D  VAL*     3.4     1.9    +      -       -      +
    447D  THR*     3.0    34.9    +      -       -      +
    477D  TYR*     3.4    23.0    +      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 444 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    426A  ARG*     2.5    41.9    +      -       +      +
    430A  LEU*     3.4    31.0    -      -       +      +
    440D  THR      3.6     1.7    +      -       -      +
    441D  ASP*     3.0    11.9    +      -       -      +
    443D  ARG*     1.3    78.8    -      -       -      +
    445D  ILE*     1.3    65.0    +      -       +      +
    447D  THR*     3.3     6.9    +      -       -      +
    448D  GLU*     3.0    40.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 445 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    327D  TYR*     3.5    28.9    -      -       +      -
    366D  PRO*     4.8    12.3    -      -       +      +
    367D  LYS*     4.0    24.3    +      -       +      +
    370D  PHE*     3.2    54.7    -      -       +      -
    441D  ASP*     3.2    13.7    +      -       +      +
    442D  LEU*     3.1    12.6    +      -       +      +
    444D  GLN*     1.3    76.6    -      -       +      +
    446D  VAL*     1.3    57.7    -      -       -      +
    448D  GLU*     3.9     8.8    -      -       -      +
    449D  HIS*     3.0    27.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 446 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    320D  TYR      6.0     0.2    -      -       -      +
    323D  HIS*     3.8    20.2    -      -       +      -
    324D  GLU*     4.0    18.6    -      -       +      +
    327D  TYR*     3.7    28.7    -      -       +      -
    442D  LEU      3.0    18.9    +      -       -      +
    443D  ARG      3.6     3.1    -      -       -      +
    445D  ILE*     1.3    73.4    -      -       -      +
    447D  THR*     1.3    61.8    +      -       -      +
    449D  HIS*     3.1     4.6    +      -       -      +
    450D  VAL*     2.9    37.6    +      -       +      +
    473D  TYR*     5.6     0.2    -      -       +      -
    476D  LEU*     4.5     4.9    -      -       +      -
    477D  TYR*     3.2    34.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 447 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    427A  SER*     4.8     9.9    -      -       -      +
    430A  LEU*     3.2    33.2    -      -       +      +
    443D  ARG      3.0    15.0    +      -       -      +
    444D  GLN      3.3     4.9    +      -       -      -
    446D  VAL*     1.3    75.9    -      -       -      +
    448D  GLU*     1.3    61.4    +      -       -      +
    450D  VAL*     3.1     8.2    +      -       -      +
    451D  GLN*     2.9    43.8    +      -       -      +
    477D  TYR*     3.0    39.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 448 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    366D  PRO*     3.4    34.9    -      -       +      +
    367D  LYS*     5.5     1.3    -      -       -      +
    444D  GLN*     3.0    28.7    +      -       +      +
    445D  ILE*     4.0     6.3    -      -       -      +
    447D  THR*     1.3    80.8    +      -       -      +
    449D  HIS*     1.3    63.1    +      -       -      +
    451D  GLN*     3.5    16.6    +      -       -      +
    452D  LEU*     3.1    34.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 449 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    200D  570      2.8    49.6    +      +       -      -
    327D  TYR*     3.1    24.6    +      -       -      +
    363D  PHE*     3.3    28.6    -      +       +      -
    364D  MET*     6.5     0.7    -      -       -      -
    367D  LYS*     2.8    30.5    +      -       -      +
    445D  ILE      3.0    20.7    +      -       -      +
    446D  VAL      3.1     5.1    +      -       -      +
    448D  GLU*     1.3    74.1    -      -       -      +
    450D  VAL*     1.3    60.9    +      -       -      +
    452D  LEU*     3.1     7.6    +      -       -      +
    453D  LEU*     2.9    35.9    +      -       +      +
    473D  TYR*     3.5     9.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 450 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    446D  VAL*     2.9    18.6    +      -       +      +
    447D  THR*     3.4    10.8    -      -       -      +
    449D  HIS*     1.3    79.3    -      -       -      +
    451D  GLN*     1.3    59.4    +      -       +      +
    453D  LEU*     3.0    10.4    +      -       -      +
    454D  GLN*     2.9    42.7    +      -       +      +
    473D  TYR*     3.3    39.5    -      -       +      +
    476D  LEU*     4.2     4.7    -      -       +      -
    477D  TYR      4.0    20.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 451 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    430A  LEU*     5.4     8.7    +      -       -      +
    434A  GLU*     3.5    30.3    +      -       -      +
    447D  THR*     2.9    29.4    +      -       -      +
    448D  GLU*     3.7    14.0    -      -       -      +
    450D  VAL*     1.3    77.4    -      -       +      +
    452D  LEU*     1.3    65.1    +      -       +      +
    454D  GLN*     3.3    20.5    +      -       -      +
    455D  VAL*     3.2    25.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 452 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    359D  PRO*     4.8     9.0    -      -       +      +
    362D  ASP*     3.7    31.6    -      -       +      +
    363D  PHE*     3.4    43.8    -      -       +      +
    366D  PRO*     5.3     0.7    -      -       +      -
    367D  LYS*     5.1     1.3    -      -       -      +
    448D  GLU*     3.1    30.1    +      -       +      +
    449D  HIS*     3.5    10.3    -      -       -      +
    450D  VAL      3.1     0.4    -      -       -      -
    451D  GLN*     1.3    80.3    -      -       +      +
    453D  LEU*     1.3    62.6    +      -       -      +
    455D  VAL*     3.3    23.4    +      -       +      +
    456D  ILE*     3.4    10.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 453 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    200D  570      3.7    26.0    -      -       +      +
    282D  PHE*     4.4     7.2    -      -       +      -
    363D  PHE*     4.1    15.7    -      -       +      -
    449D  HIS*     2.9    21.7    +      -       +      +
    450D  VAL*     3.0     9.4    +      -       -      +
    452D  LEU*     1.3    77.4    -      -       -      +
    454D  GLN*     1.3    61.7    +      -       -      +
    456D  ILE*     3.2    15.8    +      -       +      +
    457D  LYS*     3.0    20.4    +      -       -      +
    463D  MET*     3.7    11.5    -      -       +      +
    465D  LEU*     4.3    26.5    -      -       +      -
    473D  TYR*     3.4    39.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 454 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    434A  GLU*     4.9     7.1    +      -       -      +
    450D  VAL*     2.9    27.1    +      -       +      +
    451D  GLN*     3.4    27.8    +      -       -      +
    452D  LEU      3.1     0.2    -      -       -      -
    453D  LEU*     1.3    74.9    -      -       -      +
    455D  VAL*     1.3    63.7    +      -       +      +
    457D  LYS*     3.2    23.5    +      -       -      +
    458D  LYS*     3.0    38.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 455 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    359D  PRO*     3.8    29.8    -      -       +      -
    451D  GLN      3.2    15.9    +      -       -      +
    452D  LEU*     3.5    20.2    -      -       +      +
    453D  LEU      3.3     0.2    -      -       -      -
    454D  GLN*     1.3    76.5    -      -       +      +
    456D  ILE*     1.3    52.4    +      -       -      +
    458D  LYS*     3.3     7.6    +      -       +      +
    459D  THR*     2.6    51.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 456 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    200D  570      4.1     6.3    -      -       +      -
    282D  PHE*     4.1    16.2    -      -       +      -
    359D  PRO*     4.5    11.0    -      -       +      -
    360D  PHE*     3.7    28.0    -      -       +      -
    363D  PHE*     3.3    35.4    -      -       +      -
    452D  LEU      3.4     9.2    +      -       -      +
    453D  LEU*     3.2    12.4    +      -       +      +
    455D  VAL*     1.3    77.8    -      -       -      +
    457D  LYS*     1.3    57.6    +      -       -      +
    459D  THR*     3.6     6.5    -      -       -      -
    460D  GLU*     2.9    50.7    +      -       +      +
    463D  MET*     3.9    21.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 457 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    453D  LEU      3.0    13.0    +      -       -      +
    454D  GLN*     3.2    26.7    +      -       -      +
    456D  ILE*     1.3    77.9    -      -       -      +
    458D  LYS*     1.3    64.8    +      -       +      +
    460D  GLU      3.4    12.6    -      -       -      +
    461D  THR*     5.1     1.0    -      -       -      -
    463D  MET*     3.3    33.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 458 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    438A  PHE*     6.1     2.2    -      -       -      -
    454D  GLN*     3.0    29.8    +      -       +      +
    455D  VAL*     3.8     6.7    -      -       -      +
    457D  LYS*     1.3    80.3    -      -       +      +
    459D  THR*     1.3    68.1    +      -       +      +
    460D  GLU      3.4     1.9    +      -       -      -
    461D  THR      5.2     0.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with THR 459 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    359D  PRO*     4.6     6.7    -      -       +      +
    455D  VAL*     2.6    47.7    +      -       +      +
    456D  ILE*     3.6     4.7    -      -       -      -
    458D  LYS*     1.3    79.8    -      -       +      +
    460D  GLU*     1.3    81.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 460 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    357D  ARG*     2.9    34.0    +      -       -      -
    359D  PRO*     5.1     2.4    -      -       -      +
    360D  PHE*     4.2    14.8    -      -       +      -
    456D  ILE*     2.9    32.4    +      -       +      +
    457D  LYS      3.4    14.0    -      -       -      +
    458D  LYS      3.3     3.0    -      -       -      -
    459D  THR*     1.3   102.5    +      -       -      +
    461D  THR*     1.3    67.1    +      -       -      +
    462D  ASP*     3.2    15.9    +      -       -      +
    463D  MET*     3.4    12.2    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il