Contacts of the helix formed by residues 79 - 136 (chain H) in PDB entry 1GD2
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 79 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77H GLU 3.7 1.5 + - - -
78H PRO* 1.3 75.9 - - - +
80H SER* 1.3 54.9 + - - +
81H LYS* 3.6 10.2 + - - +
82H ARG* 3.1 24.8 + - - +
83H LYS* 2.8 32.3 + - - +
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Residues in contact with SER 80 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79H SER* 1.3 72.9 - - - +
81H LYS* 1.3 60.2 + - - +
83H LYS* 3.5 13.1 + - - +
84H ALA* 3.0 28.2 + - - +
87H ARG* 4.8 3.5 + - - +
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Residues in contact with LYS 81 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79H SER* 3.1 8.0 + - - +
80H SER* 1.3 78.3 - - - +
82H ARG* 1.3 60.0 - - - +
84H ALA* 3.3 7.0 + - - +
85H GLN* 3.0 28.1 + - - +
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Residues in contact with ARG 82 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-6C G 3.3 23.1 + - - +
-5C G 2.9 28.1 + - - -
4D A 3.8 4.9 + - - +
5D C 3.4 15.0 - - - +
78H PRO* 4.0 15.5 - - + -
79H SER* 3.1 27.3 + - - +
81H LYS* 1.3 73.5 - - - +
83H LYS* 1.3 60.2 + - - +
85H GLN* 3.0 40.1 + - - +
86H ASN* 2.9 54.4 + - - +
89H ALA* 6.1 0.4 - - - +
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Residues in contact with LYS 83 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2D T 4.2 18.8 + - + +
3D A 2.8 38.6 + - - +
77H GLU* 3.0 31.0 + - - +
78H PRO* 3.4 21.8 - - + +
79H SER 2.8 18.3 + - - +
80H SER* 3.6 12.1 - - - +
82H ARG* 1.3 77.4 - - - +
84H ALA* 1.3 59.0 + - - +
86H ASN* 3.5 9.8 + - - +
87H ARG* 3.2 45.9 + - - +
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Residues in contact with ALA 84 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80H SER 3.0 18.0 + - - +
81H LYS* 3.5 8.3 - - - +
83H LYS* 1.3 75.3 - - - +
85H GLN* 1.3 59.3 + - - +
87H ARG* 3.3 26.7 + - - +
88H ALA* 3.0 28.1 + - - +
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Residues in contact with GLN 85 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-7C A 5.0 0.9 - - - +
-6C G 2.7 62.7 + - + +
81H LYS 3.0 13.4 + - - +
82H ARG* 3.0 36.8 + - - +
84H ALA* 1.3 74.5 - - - +
86H ASN* 1.3 59.7 + - - +
88H ALA* 3.3 6.4 + - + +
89H ALA* 2.8 30.2 + - + +
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Residues in contact with ASN 86 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-5C G 4.3 1.2 - - - +
-4C T 4.1 5.7 - - - +
2D T 3.7 10.3 - - + +
3D A 3.5 42.1 + - + +
4D A 3.1 23.9 + - - +
78H PRO* 5.3 1.8 - - - +
82H ARG* 2.9 51.5 + - - +
83H LYS* 3.7 8.6 - - - +
84H ALA 3.4 0.2 - - - -
85H GLN* 1.3 75.7 - - - +
87H ARG* 1.3 58.5 + - - +
89H ALA* 3.9 4.5 - - - +
90H GLN* 3.0 31.0 + - - +
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Residues in contact with ARG 87 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1D G 3.7 45.2 + - + +
2D T 2.8 44.0 + - + +
80H SER* 4.8 3.8 + - - +
83H LYS* 3.2 30.6 + - - +
84H ALA* 3.3 30.6 - - - +
85H GLN 3.2 0.2 - - - -
86H ASN* 1.3 79.8 - - - +
88H ALA* 1.3 56.9 + - - +
90H GLN* 3.3 2.5 + - - +
91H ARG* 2.9 30.4 + - - +
94H ARG* 4.8 1.2 + - - -
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Residues in contact with ALA 88 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84H ALA 3.0 14.1 + - - +
85H GLN* 3.6 8.5 - - + +
87H ARG* 1.3 77.6 - - - +
89H ALA* 1.3 64.6 + - - +
91H ARG* 3.4 9.1 + - - +
92H ALA* 3.2 22.7 + - - +
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Residues in contact with ALA 89 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-6C G 4.4 6.5 - - + +
-5C G 3.8 37.1 + - + +
-4C T 3.7 20.4 - - + +
82H ARG* 6.1 0.2 - - - +
85H GLN* 2.8 22.4 + - + +
86H ASN* 3.9 5.2 - - - +
88H ALA* 1.3 72.9 - - - +
90H GLN* 1.3 57.0 + - - +
92H ALA* 3.5 3.9 + - - +
93H PHE* 3.0 27.9 + - - +
96H ARG* 4.8 1.2 + - - -
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Residues in contact with GLN 90 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-4C T 3.8 13.1 + - - +
-3C T 2.9 28.0 + - - +
-2C A 3.3 12.9 + - - -
-1C C 5.1 0.7 + - - -
1D G 4.1 8.4 - - - +
2D T 3.2 27.9 + - + +
3D A 3.5 4.2 - - - +
86H ASN 3.0 18.6 + - - +
87H ARG 3.7 4.0 - - - +
88H ALA 3.3 0.2 - - - -
89H ALA* 1.3 75.9 - - - +
91H ARG* 1.3 59.7 + - - +
93H PHE* 3.6 15.6 - - - +
94H ARG* 3.0 53.4 + - - +
97H LYS* 5.4 2.3 + - - -
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Residues in contact with ARG 91 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1D C 5.7 2.8 + - - -
1D G 5.3 6.1 - - - +
87H ARG 2.9 17.0 + - - +
88H ALA* 3.7 9.0 - - - +
89H ALA 3.4 0.2 - - - -
90H GLN* 1.3 75.5 - - - +
92H ALA* 1.3 62.8 + - - +
94H ARG* 3.6 25.0 + - - +
95H LYS* 3.1 24.3 + - + +
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Residues in contact with ALA 92 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-5C G 4.8 5.6 - - - +
88H ALA 3.2 16.9 + - - +
89H ALA* 3.7 6.7 - - - +
91H ARG* 1.3 76.3 - - - +
93H PHE* 1.3 59.2 + - - +
95H LYS* 3.3 8.0 + - - +
96H ARG* 3.0 50.5 + - - +
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Residues in contact with PHE 93 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-4C T 3.2 66.6 - + + -
-3C T 3.3 40.6 - - + -
89H ALA 3.0 17.8 + - - +
90H GLN* 3.6 14.8 - - - +
91H ARG 3.3 0.2 - - - -
92H ALA* 1.3 75.3 - - - +
94H ARG* 1.3 67.6 + - - +
96H ARG* 3.4 15.0 + - + +
97H LYS* 3.0 42.2 + - + +
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Residues in contact with ARG 94 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1D C 3.5 61.2 + - - +
1D G 3.4 29.1 + - - -
97G LYS* 6.1 0.2 - - - +
87H ARG 4.8 1.2 + - - -
90H GLN* 3.0 40.7 + - - +
91H ARG* 3.7 31.7 + - - +
93H PHE* 1.3 75.8 - - + +
95H LYS* 1.3 57.1 - - - +
97H LYS* 3.2 29.8 + - - +
98H GLU* 3.0 37.3 + - - +
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Residues in contact with LYS 95 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91H ARG* 3.1 13.1 + - + +
92H ALA* 3.4 12.8 - - - +
94H ARG* 1.3 79.1 - - - +
96H ARG* 1.3 58.9 + - + +
98H GLU* 3.0 26.9 + - - +
99H ASP* 2.8 63.8 + - - +
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Residues in contact with ARG 96 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-5C G 3.5 27.5 + - - +
-4C T 2.6 30.1 + - - -
89H ALA 4.8 1.2 + - - -
92H ALA* 3.0 40.5 + - - +
93H PHE* 3.7 19.4 - - + +
95H LYS* 1.3 77.9 - - + +
97H LYS* 1.3 56.7 + - - +
99H ASP* 3.8 10.0 - - - +
100H HIS* 3.1 28.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 97 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97G LYS* 4.0 31.9 - - - +
101G LEU* 6.1 2.4 - - + +
90H GLN* 5.4 2.4 + - - -
93H PHE* 3.0 32.0 + - + +
94H ARG* 3.4 32.9 - - - +
95H LYS 3.2 0.2 - - - -
96H ARG* 1.3 78.1 - - - +
98H GLU* 1.3 57.1 + - + +
100H HIS* 3.5 7.8 + - - +
101H LEU* 3.1 25.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU 98 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94H ARG* 3.0 21.6 + - - +
95H LYS* 3.0 44.3 + - - +
97H LYS* 1.3 76.3 - - - +
99H ASP* 1.3 68.4 + - - +
101H LEU* 3.4 12.1 + - + +
102H LYS* 3.3 28.3 + - + +
----------------------------------------------------------
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Residues in contact with ASP 99 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95H LYS* 2.8 55.1 + - - +
96H ARG* 3.8 10.4 - - - +
98H GLU* 1.3 79.9 - - - +
100H HIS* 1.3 58.2 + - - +
102H LYS* 3.5 5.3 + - - +
103H ALA* 3.0 29.6 + - - +
----------------------------------------------------------
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Residues in contact with HIS 100 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101G LEU* 4.4 10.3 - - + -
105G GLU* 2.8 30.1 + - - -
96H ARG 3.1 18.2 + - - +
97H LYS* 3.7 7.2 - - - +
98H GLU 3.2 0.2 - - - -
99H ASP* 1.3 75.4 - - - +
101H LEU* 1.3 59.0 + - - +
103H ALA* 3.6 7.2 - - - +
104H LEU* 2.9 58.8 + - + +
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Residues in contact with LEU 101 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97G LYS* 5.6 13.2 - - + -
100G HIS* 4.1 22.4 - - + +
101G LEU* 4.7 14.6 - - + -
104G LEU* 3.8 21.3 - - + -
97H LYS* 3.1 14.4 + - + +
98H GLU* 3.6 15.3 - - + +
99H ASP 3.3 0.2 - - - -
100H HIS* 1.3 78.7 - - - +
102H LYS* 1.3 80.2 + - + +
104H LEU* 3.4 6.6 + - - +
105H GLU* 3.2 35.4 + - + +
----------------------------------------------------------
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Residues in contact with LYS 102 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98H GLU* 3.3 19.8 + - + +
99H ASP* 3.9 4.5 - - - +
100H HIS 3.2 0.2 - - - -
101H LEU* 1.3 98.3 - - + +
103H ALA* 1.3 56.6 + - - +
104H LEU 3.0 5.2 - - - -
105H GLU* 3.4 20.5 + - - +
106H THR* 3.0 40.7 + - + +
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Residues in contact with ALA 103 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99H ASP 3.0 19.1 + - - +
100H HIS* 3.3 11.4 + - - +
102H LYS* 1.3 75.3 - - - +
104H LEU* 1.3 58.1 - - - +
106H THR* 3.8 9.4 + - - -
107H GLN* 3.0 28.4 + - - +
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Residues in contact with LEU 104 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101G LEU* 3.8 17.7 - - + -
104G LEU* 3.5 28.0 - - + -
105G GLU* 3.4 40.2 - - + +
108G VAL* 3.8 12.3 - - + +
100H HIS* 2.9 36.3 + - + +
101H LEU* 3.4 6.3 - - - +
102H LYS 3.0 0.2 - - - -
103H ALA* 1.3 79.2 - - - +
105H GLU* 1.3 63.8 + - - +
107H GLN* 3.0 32.9 + - - +
108H VAL* 3.1 17.8 + - - +
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Residues in contact with GLU 105 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100G HIS* 3.4 26.7 + - - -
104G LEU* 3.4 20.4 - - + +
101H LEU* 3.2 20.9 + - - +
102H LYS* 3.4 27.5 + - - +
104H LEU* 1.3 77.7 - - - +
106H THR* 1.3 59.2 - - + +
107H GLN 3.2 0.2 - - - -
108H VAL* 3.1 26.8 - - - +
109H VAL* 3.7 6.1 + - - +
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Residues in contact with THR 106 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102H LYS* 3.0 22.8 + - + +
103H ALA* 3.8 9.2 + - - -
105H GLU* 1.3 77.5 - - + +
107H GLN* 1.3 61.2 + - - +
108H VAL 3.2 0.7 - - - -
109H VAL* 3.0 26.6 - - + +
110H THR* 3.6 15.8 - - - +
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Residues in contact with GLN 107 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108G VAL* 3.2 32.0 - - + +
112G LYS* 4.6 15.0 + - - +
103H ALA 3.0 22.1 + - - +
104H LEU* 3.0 26.9 + - - +
106H THR* 1.3 75.7 - - - +
108H VAL* 1.3 65.7 + - - +
110H THR* 3.1 20.7 + - - +
111H LEU* 3.3 19.2 + - + +
----------------------------------------------------------
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Residues in contact with VAL 108 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104G LEU* 4.5 5.6 - - + -
107G GLN* 3.7 28.3 - - - +
108G VAL* 3.7 16.8 - - + -
111G LEU* 3.8 14.3 - - + +
104H LEU 3.1 15.0 + - - +
105H GLU* 3.1 15.5 - - - +
107H GLN* 1.3 77.4 - - - +
109H VAL* 1.3 65.3 + - - +
111H LEU* 3.1 5.9 + - - +
112H LYS* 3.0 49.6 + - + +
----------------------------------------------------------
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Residues in contact with VAL 109 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105H GLU 3.9 2.7 - - - +
106H THR* 3.0 37.7 - - + +
108H VAL* 1.3 75.4 - - - +
110H THR* 1.3 65.8 + - + +
112H LYS* 3.3 16.8 + - + +
113H GLU* 3.1 37.9 + - + +
----------------------------------------------------------
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Residues in contact with THR 110 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106H THR 3.6 12.9 + - - +
107H GLN* 3.1 18.1 + - - +
109H VAL* 1.3 79.8 - - + +
111H LEU* 1.3 63.3 + - - +
113H GLU* 3.3 16.8 - - - +
114H LEU* 2.9 36.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 111 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108G VAL* 3.9 14.4 - - + +
111G LEU* 3.7 33.5 - - + +
112G LYS* 3.4 32.3 - - + -
115G HIS* 4.0 37.6 - - + +
107H GLN* 3.3 22.4 + - + +
108H VAL* 3.1 5.4 + - - +
110H THR* 1.3 83.4 + - - +
112H LYS* 1.3 59.9 + - - +
113H GLU 3.3 0.2 - - - -
114H LEU* 3.8 10.4 - - + +
115H HIS* 3.1 26.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 112 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107G GLN* 4.8 9.2 - - - +
111G LEU* 4.3 14.3 - - + +
108H VAL* 3.0 37.8 + - + +
109H VAL* 3.3 15.9 - - + +
111H LEU* 1.3 77.0 - - - +
113H GLU* 1.3 60.3 + - + +
115H HIS* 3.8 10.1 + - + +
116H SER* 3.2 22.5 + - - -
112I LYS 5.7 0.6 + - - -
113I GLU* 5.0 15.2 - - - +
116I SER* 4.6 24.6 + - - +
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Residues in contact with GLU 113 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109H VAL* 3.1 28.4 + - + +
110H THR* 3.3 25.5 - - - +
112H LYS* 1.3 77.8 - - + +
114H LEU* 1.3 61.8 + - + +
115H HIS 3.2 2.7 - - - -
116H SER* 3.8 7.0 + - - +
117H SER* 3.4 23.9 + - - -
----------------------------------------------------------
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Residues in contact with LEU 114 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115G HIS* 3.5 40.0 + - + +
118G THR* 5.0 0.7 + - - -
110H THR* 2.9 23.4 + - - +
111H LEU* 3.5 15.2 + - + +
112H LYS 3.3 0.2 - - - -
113H GLU* 1.3 82.7 - - + +
115H HIS* 1.3 58.3 + - - +
117H SER* 3.5 14.6 + - - +
118H THR* 3.2 27.0 + - - +
----------------------------------------------------------
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Residues in contact with HIS 115 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114G LEU* 3.7 37.0 + - + +
115G HIS* 6.0 4.3 - - - +
118G THR* 3.7 26.3 + - + +
111H LEU 3.1 16.1 + - - +
112H LYS* 3.8 9.9 - - - +
113H GLU 3.2 0.2 - - - -
114H LEU* 1.3 79.0 - - - +
116H SER* 1.3 60.1 + - - +
117H SER 3.3 0.2 - - - -
118H THR* 3.5 1.6 + - - -
119H THR* 2.8 57.0 + - + +
120I LEU* 4.3 19.2 - - + +
----------------------------------------------------------
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Residues in contact with SER 116 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112H LYS 3.2 16.6 + - - -
113H GLU* 4.0 7.6 - - - -
115H HIS* 1.3 80.8 - - - +
117H SER* 1.3 57.4 + - - +
120H LEU* 3.1 31.5 + - - +
116I SER 4.3 12.6 + - - -
120I LEU* 3.6 31.9 - - - +
----------------------------------------------------------
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Residues in contact with SER 117 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113H GLU 3.4 12.4 + - - -
114H LEU* 3.5 23.0 + - - +
116H SER* 1.3 81.5 - - - +
118H THR* 1.3 62.6 + - - +
120H LEU* 4.1 6.4 - - - +
121H GLU* 3.2 28.8 + - - +
----------------------------------------------------------
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Residues in contact with THR 118 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115G HIS* 5.3 3.2 + - - -
118G THR* 3.3 41.5 - - - +
119G THR* 4.3 8.6 + - - +
122G ASN* 4.3 14.4 - - + +
114H LEU* 3.2 21.5 + - - +
115H HIS 3.5 3.2 + - - -
117H SER* 1.3 79.2 + - - +
119H THR* 1.3 61.3 + - - +
121H GLU* 3.8 10.0 + - - +
122H ASN* 3.0 29.6 + - - +
----------------------------------------------------------
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Residues in contact with THR 119 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118G THR* 4.0 8.3 - - - +
115H HIS* 2.8 47.9 + - + +
116H SER* 4.0 4.7 - - - -
118H THR* 1.3 76.3 - - - +
120H LEU* 1.3 58.1 + - - +
122H ASN* 3.2 15.6 + - - +
123H ASP* 2.7 27.2 + - - +
126H ARG* 5.5 0.2 + - - -
120I LEU* 4.5 12.6 - - + -
124I GLN* 3.6 21.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 120 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116H SER 3.1 18.7 + - - +
117H SER* 4.2 6.3 - - - +
119H THR* 1.3 77.9 - - - +
121H GLU* 1.3 63.4 + - + +
123H ASP* 3.3 13.8 + - - +
124H GLN* 3.6 17.7 + - - +
120I LEU* 4.9 3.4 - - + +
123I ASP* 3.4 50.3 - - + +
124I GLN* 3.7 9.2 - - + +
----------------------------------------------------------
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Residues in contact with GLU 121 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122G ASN* 3.2 25.8 + - - +
126G ARG* 3.3 21.8 + - - +
117H SER 3.2 19.0 + - - +
118H THR* 3.9 14.0 + - - +
119H THR 3.2 0.2 - - - -
120H LEU* 1.3 78.9 - - + +
122H ASN* 1.3 60.2 - - - +
123H ASP 3.3 0.7 - - - -
124H GLN* 3.6 8.5 + - + +
125H LEU* 3.2 28.6 + - + +
----------------------------------------------------------
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Residues in contact with ASN 122 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118G THR* 3.1 27.1 + - - +
121G GLU* 3.1 23.6 - - - +
122G ASN* 3.0 35.2 + - - -
125G LEU* 3.5 6.9 - - + +
118H THR* 3.0 25.1 + - - +
119H THR* 3.2 8.3 + - - +
121H GLU* 1.3 75.4 - - - +
123H ASP* 1.3 59.9 + - - +
124H GLN 3.3 0.9 - - - -
125H LEU* 3.7 7.0 - - - +
126H ARG* 2.9 48.3 + - - +
----------------------------------------------------------
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Residues in contact with ASP 123 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119H THR* 2.7 18.2 + - - +
120H LEU* 3.3 12.5 - - - +
121H GLU 3.3 0.2 - - - -
122H ASN* 1.3 76.8 - - - +
124H GLN* 1.3 62.1 + - - +
126H ARG* 3.5 17.1 + - - +
127H GLN* 3.4 23.2 + - - +
124I GLN* 2.7 42.5 + - + +
----------------------------------------------------------
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Residues in contact with GLN 124 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120H LEU 3.6 8.8 + - - +
121H GLU* 3.6 12.1 + - + +
122H ASN 3.3 0.2 - - - -
123H ASP* 1.3 78.9 - - - +
125H LEU* 1.3 60.0 + - + +
126H ARG 3.1 0.4 - - - -
127H GLN* 3.0 28.9 + - - +
128H LYS* 3.2 13.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 125 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122G ASN* 3.2 38.4 - - - +
125G LEU* 3.8 16.6 - - + +
126G ARG* 3.9 32.5 - - + +
129G VAL* 4.1 18.3 - - + +
121H GLU* 3.2 17.2 + - + +
122H ASN* 3.5 15.5 + - - +
124H GLN* 1.3 77.1 - - - +
126H ARG* 1.3 57.8 + - - +
127H GLN 3.2 0.2 - - - -
128H LYS* 3.4 9.5 + - + +
129H VAL* 3.1 34.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 126 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121G GLU* 2.9 29.2 + - - +
125G LEU* 3.9 23.7 - - - +
119H THR 5.5 0.2 + - - -
122H ASN* 2.9 27.6 + - - +
123H ASP* 3.5 19.8 + - - +
125H LEU* 1.3 77.5 - - - +
127H GLN* 1.3 57.7 + - - +
129H VAL* 3.9 5.8 - - + +
130H ARG* 3.1 33.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 127 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123H ASP 3.4 14.1 + - - +
124H GLN* 3.0 18.0 + - - +
126H ARG* 1.3 80.5 - - + +
128H LYS* 1.3 62.3 + - - +
130H ARG* 4.3 2.4 - - - +
131H GLN* 2.9 61.2 + - - +
130I ARG* 4.5 11.7 + - - +
131I GLN* 4.3 27.3 - - - +
134I GLU* 5.5 4.6 - - - +
----------------------------------------------------------
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Residues in contact with LYS 128 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129G VAL* 3.8 24.9 - - + -
124H GLN 3.2 10.2 + - - +
125H LEU* 3.8 10.1 - - + +
126H ARG 3.3 0.2 - - - -
127H GLN* 1.3 84.5 - - - +
129H VAL* 1.3 60.0 + - - +
131H GLN* 3.5 27.0 - - + +
132H LEU* 3.1 43.4 + - + +
----------------------------------------------------------
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Residues in contact with VAL 129 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125G LEU* 3.7 28.0 - - + +
128G LYS* 3.3 36.8 - - + +
129G VAL* 3.5 20.4 - - + +
132G LEU* 3.8 8.2 - - + +
125H LEU 3.1 18.9 + - - +
126H ARG* 4.2 4.5 - - + +
128H LYS* 1.3 77.3 - - - +
130H ARG* 1.3 59.2 + - - +
132H LEU* 3.4 0.9 + - - -
133H GLU* 3.1 42.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 130 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126H ARG* 3.1 22.4 + - + +
127H GLN* 4.5 3.1 - - - +
129H VAL* 1.3 76.5 - - - +
131H GLN* 1.3 61.5 + - + +
133H GLU* 4.0 12.4 - - - +
134H GLU* 3.5 22.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 131 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127H GLN* 2.9 44.5 + - - +
128H LYS* 3.5 26.6 - - + +
129H VAL 3.3 0.8 - - - -
130H ARG* 1.3 78.5 - - + +
132H LEU* 1.3 63.1 + - + +
133H GLU 3.5 0.4 - - - -
134H GLU* 4.2 4.3 - - - +
135H GLU* 3.3 27.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 132 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129G VAL* 3.6 41.1 - - + +
132G LEU* 4.0 25.8 - - + +
133G GLU* 3.7 21.3 - - + +
136G LEU* 5.7 6.0 - - + +
128H LYS* 3.1 30.7 + - + +
129H VAL 3.4 0.2 + - - -
131H GLN* 1.3 80.7 - - + +
133H GLU* 1.3 58.3 + - - +
135H GLU* 4.0 20.2 - - - +
136H LEU* 3.1 28.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 133 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128G LYS* 4.7 4.0 - - - +
132G LEU* 3.9 15.7 - - + +
129H VAL* 3.1 36.4 + - - +
130H ARG* 4.0 10.9 - - - +
132H LEU* 1.3 76.2 - - - +
134H GLU* 1.3 61.7 + - - +
135H GLU 3.5 0.2 - - - -
136H LEU* 3.7 9.7 - - + +
137H ARG* 3.1 24.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 134 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130H ARG 3.5 19.2 + - - +
131H GLN* 4.4 4.3 - - - +
132H LEU 3.4 0.2 - - - -
133H GLU* 1.3 75.5 - - - +
135H GLU* 1.3 66.9 + - - +
136H LEU 3.1 1.3 - - - -
137H ARG* 3.2 9.7 + - - +
138H ILE* 3.1 28.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 135 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136G LEU* 5.0 11.1 - - + +
131H GLN 3.3 18.6 + - - +
132H LEU* 4.0 24.1 - - - +
134H GLU* 1.3 79.2 - - - +
136H LEU* 1.3 56.6 + - - +
138H ILE* 3.8 5.5 + - - +
139H LEU* 3.2 46.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 136 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132G LEU* 4.2 15.7 - - + +
135G GLU* 3.2 46.2 - - + +
136G LEU* 4.0 25.6 - - + -
139G LEU* 3.7 28.4 - - + +
132H LEU 3.1 19.0 + - - +
133H GLU* 3.9 8.1 - - + +
134H GLU 3.1 0.4 - - - -
135H GLU* 1.3 78.8 - - - +
137H ARG* 1.3 60.7 + - - +
138H ILE 3.4 0.4 - - - -
139H LEU* 3.5 19.5 + - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il