Contacts of the helix formed by residues 79 - 138 (chain G) in PDB entry 1GD2
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 79 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77G GLU 3.5 2.0 + - - -
78G PRO* 1.3 77.9 - - - +
80G SER* 1.3 66.0 - - - +
81G LYS* 3.6 9.6 + - - +
82G ARG* 3.1 23.0 + - - +
83G LYS* 2.9 21.9 + - - +
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Residues in contact with SER 80 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3A A 6.2 4.0 - - - -
1B G 4.3 21.5 + - - +
2B T 5.1 2.4 + - - -
79G SER* 1.3 74.7 - - - +
81G LYS* 1.3 59.6 + - - +
83G LYS* 3.4 12.8 + - - +
84G ALA* 3.0 27.5 + - - +
87G ARG* 4.9 1.9 + - - -
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Residues in contact with LYS 81 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2A T 5.1 1.8 + - - -
3A A 3.1 54.5 + - - -
4A A 3.3 40.2 + - - +
-2B A 4.5 9.3 + - - -
79G SER* 3.1 8.8 + - - +
80G SER* 1.3 81.1 - - - +
82G ARG* 1.3 59.2 + - - +
84G ALA* 3.5 7.0 + - - +
85G GLN* 3.1 27.4 + - - +
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Residues in contact with ARG 82 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4C A 4.0 3.8 + - - +
5C C 3.5 11.9 - - - +
-6D G 3.3 26.5 + - - +
-5D G 3.0 26.9 + - - -
78G PRO* 4.0 15.3 - - + -
79G SER* 3.1 27.1 + - - +
81G LYS* 1.3 73.8 - - - +
83G LYS* 1.3 61.3 + - - +
85G GLN* 2.8 44.7 + - - +
86G ASN* 2.9 55.4 + - - +
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Residues in contact with LYS 83 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B T 6.1 0.9 - - - +
2C T 4.2 18.8 + - + +
3C A 2.6 36.9 + - - +
76G GLN* 3.3 31.8 - - - +
78G PRO* 3.4 22.9 - - + +
79G SER 2.9 18.3 + - - +
80G SER* 3.6 12.1 - - - +
82G ARG* 1.3 75.4 - - - +
84G ALA* 1.3 63.6 + - - +
86G ASN* 3.3 9.1 + - - +
87G ARG* 3.0 44.6 + - - +
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Residues in contact with ALA 84 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1B C 3.8 13.7 - - - +
1B G 3.5 24.6 + - - +
80G SER 3.0 16.8 + - - +
81G LYS* 3.6 8.7 - - - +
83G LYS* 1.3 78.0 - - - +
85G GLN* 1.3 55.7 + - - +
87G ARG* 3.4 19.2 + - - +
88G ALA* 3.0 27.8 + - - +
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Residues in contact with GLN 85 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-7D A 5.4 0.7 - - - +
-6D G 2.7 62.7 + - + +
81G LYS 3.1 16.8 + - - +
82G ARG* 2.8 36.0 + - - +
83G LYS 3.2 0.2 - - - -
84G ALA* 1.3 74.3 - - - +
86G ASN* 1.3 60.9 + - - +
88G ALA* 3.8 6.2 - - + +
89G ALA* 2.8 29.4 + - + +
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Residues in contact with ASN 86 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2C T 3.6 9.7 - - + +
3C A 3.3 43.6 + - + +
4C A 3.1 23.6 + - - +
-5D G 4.3 1.4 - - - +
-4D T 4.2 4.4 - - - +
78G PRO* 5.2 2.6 - - - +
82G ARG* 2.9 51.7 + - - +
83G LYS* 3.3 8.2 + - - +
85G GLN* 1.3 75.9 - - - +
87G ARG* 1.3 62.6 + - - +
89G ALA* 4.0 4.6 - - - +
90G GLN* 3.1 26.3 + - - +
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Residues in contact with ARG 87 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1B G 2.7 40.2 + - - +
2B T 5.0 4.8 + - - -
1C G 3.5 36.0 + - + +
2C T 3.0 44.3 + - + +
87F ARG* 3.2 50.9 - - - +
80G SER 4.9 1.4 + - - -
83G LYS* 3.0 25.9 + - - +
84G ALA* 3.5 20.8 - - - +
85G GLN 3.2 0.2 - - - -
86G ASN* 1.3 77.5 - - - +
88G ALA* 1.3 56.3 + - - +
90G GLN* 3.5 2.4 + - - +
91G ARG* 3.0 27.7 + - - +
94G ARG* 5.2 0.9 + - - -
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Residues in contact with ALA 88 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84G ALA 3.0 16.6 + - - +
85G GLN* 3.3 8.7 + - + +
87G ARG* 1.3 75.9 - - - +
89G ALA* 1.3 59.9 + - - +
91G ARG* 3.2 8.6 + - - +
92G ALA* 3.0 29.5 + - - +
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Residues in contact with ALA 89 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-6D G 4.2 7.4 - - + -
-5D G 3.8 46.3 + - + +
-4D T 3.6 12.1 - - + +
82G ARG* 6.0 0.4 - - - +
85G GLN* 2.8 18.6 + - + +
86G ASN* 4.0 6.1 - - - +
88G ALA* 1.3 76.9 - - - +
90G GLN* 1.3 58.2 + - - +
92G ALA* 3.8 2.6 - - - +
93G PHE* 3.0 27.7 + - - +
96G ARG* 4.8 1.4 + - - -
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Residues in contact with GLN 90 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1C G 4.1 4.2 - - - +
2C T 3.3 26.5 + - + +
3C A 3.5 4.4 - - - +
-4D T 3.9 11.3 - - - +
-3D T 2.8 30.0 + - - +
-2D A 3.3 11.8 + - - +
-1D C 5.0 1.6 + - - -
86G ASN 3.1 18.8 + - - +
87G ARG 3.9 3.4 - - - +
89G ALA* 1.3 73.6 - - - +
91G ARG* 1.3 62.0 + - - +
92G ALA 3.2 0.2 - - - -
93G PHE* 3.7 14.5 - - - +
94G ARG* 3.0 62.0 + - - +
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Residues in contact with ARG 91 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1C G 5.5 3.6 - - - +
91F ARG* 3.0 44.3 - - - +
87G ARG 3.0 17.7 + - - +
88G ALA* 3.2 7.8 + - - +
90G GLN* 1.3 77.2 - - - +
92G ALA* 1.3 57.7 + - - +
94G ARG* 3.6 21.3 + - - +
95G LYS* 3.1 37.8 + - + +
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Residues in contact with ALA 92 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-5D G 4.6 6.3 - - - +
88G ALA 3.0 16.4 + - - +
89G ALA* 3.8 7.4 - - - +
91G ARG* 1.3 76.2 - - - +
93G PHE* 1.3 64.3 + - - +
95G LYS* 3.3 6.9 + - - +
96G ARG* 3.1 45.9 + - - +
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Residues in contact with PHE 93 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-4D T 3.5 59.2 - + + -
-3D T 3.4 43.3 - - + -
89G ALA 3.0 19.4 + - - +
90G GLN* 3.7 13.7 - - - +
92G ALA* 1.3 76.7 - - - +
94G ARG* 1.3 66.7 + - + +
96G ARG* 3.3 14.2 + - - +
97G LYS* 3.1 44.8 + - + +
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Residues in contact with ARG 94 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1C C 3.5 52.3 + - - +
1C G 2.6 43.6 + - - -
87G ARG 5.2 0.8 + - - -
90G GLN* 3.0 44.6 + - - +
91G ARG* 3.8 27.8 - - - +
93G PHE* 1.3 80.2 - - + +
95G LYS* 1.3 58.5 + - - +
97G LYS* 3.2 12.1 + - + +
98G GLU* 2.9 36.3 + - - +
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Residues in contact with LYS 95 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91G ARG* 3.1 27.0 + - + +
92G ALA* 3.6 7.9 - - - +
93G PHE 3.3 0.2 - - - -
94G ARG* 1.3 79.7 - - - +
96G ARG* 1.3 59.1 + - + +
98G GLU* 3.0 38.2 + - - +
99G ASP* 3.0 47.5 + - - +
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Residues in contact with ARG 96 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-5D G 3.5 27.5 + - - +
-4D T 2.7 29.7 + - - -
89G ALA 4.8 1.4 + - - -
92G ALA* 3.1 36.3 + - - +
93G PHE* 3.7 20.5 - - + +
95G LYS* 1.3 78.2 - - + +
97G LYS* 1.3 56.3 + - - +
99G ASP* 3.7 9.5 - - - +
100G HIS* 3.1 28.6 + - - +
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Residues in contact with LYS 97 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93G PHE* 3.1 36.7 + - + +
94G ARG* 3.4 15.5 - - + +
96G ARG* 1.3 76.9 - - - +
98G GLU* 1.3 58.9 + - - +
100G HIS* 3.4 8.3 + - + +
101G LEU* 3.0 27.6 + - + +
94H ARG* 6.1 0.4 - - - +
97H LYS* 4.0 35.5 - - - +
101H LEU* 5.6 12.1 - - + -
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Residues in contact with GLU 98 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94G ARG* 2.9 21.0 + - - +
95G LYS* 3.0 50.7 + - - +
97G LYS* 1.3 73.8 - - - +
99G ASP* 1.3 62.9 + - - +
101G LEU* 3.5 10.4 + - + +
102G LYS* 3.0 57.5 + - - +
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Residues in contact with ASP 99 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95G LYS* 3.0 39.9 + - - +
96G ARG* 3.7 9.9 - - - +
97G LYS 3.3 0.2 - - - -
98G GLU* 1.3 81.4 - - - +
100G HIS* 1.3 60.3 + - - +
102G LYS* 3.5 16.8 + - - +
103G ALA* 3.0 28.6 + - - +
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Residues in contact with HIS 100 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96G ARG 3.1 17.3 + - - +
97G LYS* 3.6 7.9 - - + +
99G ASP* 1.3 75.3 - - - +
101G LEU* 1.3 60.0 + - - +
103G ALA* 3.3 6.8 + - - +
104G LEU* 2.9 39.0 + - + +
101H LEU* 4.1 25.1 - - + +
105H GLU* 3.4 24.6 + - - -
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Residues in contact with LEU 101 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97G LYS 3.0 16.9 + - - +
98G GLU* 3.7 10.1 - - + +
100G HIS* 1.3 80.7 - - + +
102G LYS* 1.3 61.8 + - + +
104G LEU* 3.3 3.3 + - - +
105G GLU* 3.0 51.3 + - + +
97H LYS* 6.1 2.5 - - + +
100H HIS* 4.4 11.0 - - + -
101H LEU* 4.7 15.3 - - + -
104H LEU* 3.8 24.5 - - + -
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Residues in contact with LYS 102 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98G GLU* 3.0 49.9 + - - +
99G ASP* 3.8 14.5 + - - +
100G HIS 3.3 0.2 - - - -
101G LEU* 1.3 80.3 - - + +
103G ALA* 1.3 60.2 + - - +
105G GLU* 3.5 6.0 + - - +
106G THR* 3.1 34.0 + - + +
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Residues in contact with ALA 103 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99G ASP 3.0 18.0 + - - +
100G HIS* 3.7 7.9 - - - +
101G LEU 3.3 0.2 - - - -
102G LYS* 1.3 74.3 - - - +
104G LEU* 1.3 64.7 + - - +
106G THR* 3.5 8.2 + - - -
107G GLN* 3.3 22.7 + - - +
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Residues in contact with LEU 104 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100G HIS* 2.9 26.0 + - + +
101G LEU* 3.7 4.9 - - + +
103G ALA* 1.3 75.1 - - - +
105G GLU* 1.3 61.1 + - - +
107G GLN* 3.1 24.1 + - - +
108G VAL* 3.0 32.1 + - - +
101H LEU* 3.8 17.5 - - + -
104H LEU* 3.5 33.4 - - + +
105H GLU* 3.4 39.9 - - + +
108H VAL* 4.5 8.1 - - + -
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Residues in contact with GLU 105 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101G LEU* 3.0 40.3 + - + +
102G LYS* 3.8 7.4 - - - +
104G LEU* 1.3 78.1 - - - +
106G THR* 1.3 57.5 + - + +
108G VAL* 3.4 5.5 + - - +
109G VAL* 3.0 33.9 + - + +
100H HIS* 2.8 25.3 + - - -
104H LEU* 3.4 29.1 - - + +
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Residues in contact with THR 106 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102G LYS* 3.1 18.8 + - + +
103G ALA* 3.5 11.9 + - - -
105G GLU* 1.3 75.5 - - + +
107G GLN* 1.3 58.0 + - - +
109G VAL* 3.7 10.2 - - - +
110G THR* 2.7 38.0 + - - -
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Residues in contact with GLN 107 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103G ALA 3.3 15.0 + - - +
104G LEU* 3.1 27.9 + - - +
106G THR* 1.3 82.4 + - - +
108G VAL* 1.3 59.4 + - - +
110G THR* 3.6 4.7 + - - -
111G LEU* 3.1 46.4 + - + +
108H VAL* 3.7 24.3 - - + +
112H LYS* 4.8 9.7 - - - +
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Residues in contact with VAL 108 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104G LEU 3.0 18.7 + - - +
105G GLU* 3.4 6.9 + - - +
107G GLN* 1.3 76.9 - - - +
109G VAL* 1.3 54.9 + - + +
111G LEU* 3.1 6.4 + - - +
112G LYS* 2.7 51.4 + - + +
104H LEU* 3.8 22.2 - - + +
107H GLN* 3.2 31.4 - - + +
108H VAL* 3.7 26.7 - - + +
111H LEU* 3.9 7.9 - - + -
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Residues in contact with VAL 109 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105G GLU* 3.0 24.6 + - + +
106G THR* 3.8 8.7 - - - +
108G VAL* 1.3 76.1 - - + +
110G THR* 1.3 62.5 + - - +
112G LYS* 3.9 9.3 - - + +
113G GLU* 3.1 46.0 + - + +
----------------------------------------------------------
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Residues in contact with THR 110 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106G THR* 2.7 22.9 + - - -
107G GLN* 3.6 8.7 - - - -
108G VAL 3.2 0.2 - - - -
109G VAL* 1.3 77.6 - - - +
111G LEU* 1.3 66.7 + - + +
113G GLU* 3.8 10.5 + - - +
114G LEU* 3.3 27.7 + - + +
----------------------------------------------------------
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Residues in contact with LEU 111 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107G GLN* 3.1 31.8 + - + +
108G VAL 3.1 5.6 + - - +
110G THR* 1.3 88.3 - - + +
112G LYS* 1.3 58.4 + - - +
113G GLU 3.2 1.8 - - - -
114G LEU* 3.4 16.5 + - + +
115G HIS* 2.9 27.7 + - - +
108H VAL* 3.8 42.0 - - + +
111H LEU* 3.7 27.8 - - + +
112H LYS* 4.3 15.3 - - + +
----------------------------------------------------------
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Residues in contact with LYS 112 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108G VAL* 2.7 40.1 + - + +
109G VAL* 4.1 8.3 - - + +
111G LEU* 1.3 71.5 - - - +
113G GLU* 1.3 62.4 + - + +
115G HIS* 3.5 12.5 - - + +
116G SER* 3.3 23.2 + - - -
107H GLN* 4.6 14.1 + - - +
111H LEU* 3.4 20.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 113 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109G VAL* 3.1 40.8 + - + +
110G THR* 3.9 9.3 - - - +
112G LYS* 1.3 76.1 - - + +
114G LEU* 1.3 59.6 + - - +
115G HIS 3.2 0.2 - - - -
116G SER* 3.1 8.7 + - - -
117G SER* 2.9 30.6 + - - +
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Residues in contact with LEU 114 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110G THR* 3.3 18.8 + - + +
111G LEU* 3.7 17.5 - - + +
113G GLU* 1.3 76.1 - - - +
115G HIS* 1.3 60.5 + - - +
117G SER* 3.5 13.1 - - - +
118G THR* 2.9 38.8 + - + +
115H HIS* 3.7 43.1 - - + +
----------------------------------------------------------
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Residues in contact with HIS 115 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111G LEU 2.9 17.7 + - - +
112G LYS* 3.5 13.5 - - + +
114G LEU* 1.3 78.4 - - - +
116G SER* 1.3 57.1 + - - +
118G THR* 3.2 7.5 + - - -
119G THR* 2.7 55.1 + - + +
111H LEU* 4.0 19.3 - - + +
114H LEU* 3.5 43.0 + - + +
115H HIS* 6.0 4.2 - - - +
118H THR* 5.3 2.9 + - - -
----------------------------------------------------------
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Residues in contact with SER 116 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112G LYS 3.3 12.3 + - - -
113G GLU* 3.1 11.1 + - - -
115G HIS* 1.3 82.1 - - - +
117G SER* 1.3 58.7 + - - +
118G THR 3.3 0.2 - - - -
119G THR* 3.7 7.7 - - - +
120G LEU* 2.9 31.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 117 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113G GLU 2.9 17.6 + - - -
114G LEU* 3.2 21.1 + - - +
116G SER* 1.3 77.9 - - - +
118G THR* 1.3 63.4 + - - +
120G LEU* 4.0 5.6 - - - +
121G GLU* 3.5 24.4 + - - +
----------------------------------------------------------
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Residues in contact with THR 118 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114G LEU* 2.9 23.7 + - + +
115G HIS* 3.2 13.5 + - - -
117G SER* 1.3 77.7 - - - +
119G THR* 1.3 60.0 + - - +
121G GLU* 3.3 19.0 - - - +
122G ASN 3.4 2.4 + - - -
114H LEU 5.0 0.2 + - - -
115H HIS* 3.7 34.4 + - + +
118H THR* 3.3 25.8 - - - +
119H THR* 4.0 7.2 - - - +
122H ASN* 3.1 24.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 119 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115G HIS* 2.7 45.1 + - + +
116G SER* 4.0 7.4 - - - -
117G SER 3.3 0.2 - - - -
118G THR* 1.3 78.0 + - - +
120G LEU* 1.3 64.3 + - - +
122G ASN* 3.3 7.7 + - + +
123G ASP* 3.2 34.1 + - - +
118H THR* 4.5 7.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 120 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116G SER 2.9 19.5 + - - +
117G SER* 4.0 5.8 - - - +
119G THR* 1.3 78.8 - - - +
121G GLU* 1.3 56.8 + - - +
123G ASP* 3.3 16.4 + - + +
124G GLN* 3.0 56.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU 121 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117G SER* 3.5 15.8 + - - +
118G THR* 3.3 19.1 - - - +
120G LEU* 1.3 76.7 - - - +
122G ASN* 1.3 59.4 + - - +
123G ASP 3.2 0.7 - - - -
124G GLN* 3.6 18.1 - - + +
125G LEU* 2.9 37.3 + - + +
122H ASN* 3.1 25.6 + - - +
126H ARG* 2.9 36.9 + - - +
----------------------------------------------------------
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Residues in contact with ASN 122 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118G THR 3.4 8.2 + - - +
119G THR* 3.3 12.5 + - + +
120G LEU 3.2 0.6 - - - -
121G GLU* 1.3 81.2 - - - +
123G ASP* 1.3 63.2 + - - +
126G ARG* 2.9 60.9 + - - +
118H THR* 4.3 7.0 - - + +
121H GLU* 3.2 28.5 + - - +
122H ASN* 3.0 28.1 + - - +
125H LEU* 3.2 18.5 - - - +
----------------------------------------------------------
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Residues in contact with ASP 123 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119G THR* 3.2 26.0 + - - +
120G LEU* 3.4 20.3 - - + +
121G GLU 3.2 0.2 - - - -
122G ASN* 1.3 86.2 - - - +
124G GLN* 1.3 57.3 - - + +
126G ARG* 4.0 7.3 - - - +
127G GLN* 3.2 28.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 124 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120G LEU* 3.0 43.6 + - + +
121G GLU* 3.3 21.9 + - - +
122G ASN 3.3 0.2 - - - -
123G ASP* 1.3 79.0 - - + +
125G LEU* 1.3 60.1 + - + +
127G GLN* 3.9 6.2 - - - +
128G LYS* 3.2 32.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 125 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121G GLU* 2.9 25.8 + - + +
124G GLN* 1.3 76.7 - - + +
126G ARG* 1.3 60.9 + - - +
127G GLN 3.3 0.7 - - - -
128G LYS* 3.6 16.6 - - + +
129G VAL* 3.1 34.8 + - - +
122H ASN* 3.5 36.6 - - + +
125H LEU* 3.8 23.6 - - + +
126H ARG* 3.9 34.8 - - - +
129H VAL* 3.7 23.4 - - + +
----------------------------------------------------------
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Residues in contact with ARG 126 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122G ASN* 2.9 44.1 + - - +
123G ASP* 4.0 8.3 - - - +
125G LEU* 1.3 75.6 - - - +
127G GLN* 1.3 59.7 + - - +
128G LYS 3.2 0.7 - - - -
129G VAL* 3.6 6.0 + - - +
130G ARG* 3.3 65.4 + - - +
121H GLU* 3.3 29.7 + - - +
125H LEU* 3.9 21.0 - - + +
----------------------------------------------------------
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Residues in contact with GLN 127 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123G ASP 3.2 19.1 + - - +
124G GLN* 4.1 7.2 - - - +
125G LEU 3.3 0.2 - - - -
126G ARG* 1.3 76.3 - - - +
128G LYS* 1.3 57.8 + - - +
130G ARG* 4.0 10.0 - - - +
131G GLN* 3.2 35.3 + - - +
----------------------------------------------------------
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Residues in contact with LYS 128 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124G GLN* 3.2 22.2 + - - +
125G LEU* 3.7 18.6 - - + +
126G ARG 3.2 0.6 - - - -
127G GLN* 1.3 77.6 - - - +
129G VAL* 1.3 62.5 + - - +
130G ARG 3.4 0.2 - - - -
131G GLN* 3.6 19.6 - - - +
132G LEU* 3.4 32.1 + - + +
129H VAL* 3.3 31.8 - - + +
133H GLU* 4.7 5.4 - - - +
----------------------------------------------------------
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Residues in contact with VAL 129 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125G LEU 3.1 23.3 + - - +
126G ARG* 4.0 6.7 - - - +
127G GLN 3.4 0.4 - - - -
128G LYS* 1.3 77.1 - - - +
130G ARG* 1.3 62.0 + - + +
132G LEU 3.7 0.2 + - - -
133G GLU* 3.0 53.7 + - - +
125H LEU* 4.1 13.0 - - + +
128H LYS* 3.8 26.2 - - + -
129H VAL* 3.5 19.5 - - + +
132H LEU* 3.6 14.0 - - + +
----------------------------------------------------------
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Residues in contact with ARG 130 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123G ASP 5.7 0.2 + - - -
126G ARG* 3.3 60.6 + - - +
127G GLN* 3.9 8.6 + - - +
128G LYS 3.4 0.2 - - - -
129G VAL* 1.3 80.5 - - + +
131G GLN* 1.3 59.7 + - - +
132G LEU 3.3 0.4 - - - -
133G GLU* 3.9 14.5 - - - +
134G GLU* 3.2 29.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 131 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127G GLN* 3.2 27.5 + - - +
128G LYS* 3.6 20.9 - - - +
130G ARG* 1.3 78.0 - - - +
132G LEU* 1.3 74.8 + - + +
134G GLU* 3.8 6.3 + - - +
135G GLU* 3.4 28.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 132 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128G LYS* 3.4 25.0 + - + +
129G VAL 4.1 2.5 - - - +
130G ARG 3.3 0.4 - - - -
131G GLN* 1.3 95.5 - - + +
133G GLU* 1.3 59.6 + - - +
134G GLU 3.3 0.4 - - - -
135G GLU* 3.4 23.4 + - - +
136G LEU* 3.1 26.3 + - - +
129H VAL* 3.8 28.5 - - + +
132H LEU* 4.0 22.9 - - + +
133H GLU* 3.9 23.6 - - + +
136H LEU* 4.2 17.2 - - + +
----------------------------------------------------------
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Residues in contact with GLU 133 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129G VAL* 3.0 40.8 + - - +
130G ARG* 3.9 15.8 - - - +
131G GLN 3.4 0.2 - - - -
132G LEU* 1.3 73.2 - - - +
134G GLU* 1.3 60.7 + - - +
135G GLU 3.1 1.3 - - - -
136G LEU* 3.5 5.3 + - - +
137G ARG* 3.0 28.8 + - - +
132H LEU* 3.7 21.0 - - + +
----------------------------------------------------------
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Residues in contact with GLU 134 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130G ARG 3.2 15.6 + - - +
131G GLN* 4.0 8.3 - - - +
133G GLU* 1.3 77.0 - - - +
135G GLU* 1.3 59.0 + - - +
137G ARG* 3.0 47.2 + - - +
138G ILE* 3.2 37.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 135 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131G GLN* 3.4 18.8 + - - +
132G LEU* 3.4 26.4 - - - +
133G GLU 3.1 0.4 - - - -
134G GLU* 1.3 81.1 - - - +
136G LEU* 1.3 59.2 + - - +
137G ARG 3.3 0.2 - - - -
138G ILE* 4.1 8.4 - - + +
139G LEU* 3.4 24.3 + - - +
136H LEU* 3.2 29.8 - - + +
----------------------------------------------------------
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Residues in contact with LEU 136 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132G LEU 3.1 15.1 + - - +
133G GLU* 3.5 6.0 + - - +
135G GLU* 1.3 76.0 - - - +
137G ARG* 1.3 64.0 + - - +
138G ILE 3.5 0.2 - - - -
139G LEU* 3.6 16.1 + - - +
132H LEU* 5.7 6.3 - - + +
135H GLU* 5.0 12.1 - - + +
136H LEU* 4.0 16.6 - - + -
139H LEU* 6.1 4.3 - - + -
----------------------------------------------------------
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Residues in contact with ARG 137 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133G GLU 3.0 19.4 + - - +
134G GLU* 3.0 34.9 + - - +
135G GLU 3.3 0.6 - - - -
136G LEU* 1.3 80.1 - - - +
138G ILE* 1.3 85.0 + - - +
139G LEU 3.3 1.7 + - - -
----------------------------------------------------------
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Residues in contact with ILE 138 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134G GLU* 3.2 23.3 - - - +
135G GLU* 4.1 9.2 - - + +
137G ARG* 1.3 105.1 - - - +
139G LEU* 1.3 64.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il