Contacts of the helix formed by residues 79 - 140 (chain F) in PDB entry 1GD2
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 79 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77F GLU 3.6 2.2 + - - -
78F PRO* 1.3 76.6 - - - +
80F SER* 1.3 64.7 + - - +
81F LYS* 3.6 9.8 + - - +
82F ARG* 3.1 23.1 + - - +
83F LYS* 2.9 22.2 + - - +
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Residues in contact with SER 80 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1C G 4.2 21.7 + - - +
2C T 5.1 2.4 + - - -
3D A 6.1 4.9 - - - -
79F SER* 1.3 75.0 - - - +
81F LYS* 1.3 59.8 + - - +
83F LYS* 3.5 13.3 + - - +
84F ALA* 3.1 28.1 + - - +
87F ARG* 4.8 1.9 + - - -
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Residues in contact with LYS 81 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-2C A 4.9 7.1 + - - -
2D T 5.1 1.5 + - - -
3D A 2.9 59.3 + - - -
4D A 3.2 40.3 + - - +
79F SER* 3.1 9.0 + - - +
80F SER* 1.3 77.7 - - - +
82F ARG* 1.3 59.5 - - - +
84F ALA* 3.4 7.3 + - - +
85F GLN* 3.0 27.1 + - - +
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Residues in contact with ARG 82 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-6A G 3.2 33.9 + - - +
-5A G 3.7 13.7 + - - -
4B A 4.4 3.6 + - - +
5B C 3.9 10.5 - - - +
78F PRO* 3.8 22.9 - - + -
79F SER* 3.1 21.0 + - - +
81F LYS* 1.3 73.3 - - - +
83F LYS* 1.3 61.6 + - - +
85F GLN* 3.2 42.8 + - - +
86F ASN* 2.9 64.6 + - - +
89F ALA* 5.5 0.4 - - - +
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Residues in contact with LYS 83 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B T 4.2 14.4 + - - +
3B A 2.7 38.7 + - - +
2C T 6.0 1.6 - - - +
77F GLU* 2.9 33.0 + - - +
78F PRO* 3.5 20.4 - - + +
79F SER 2.9 17.2 + - - +
80F SER* 3.5 12.3 - - - +
82F ARG* 1.3 76.7 - - - +
84F ALA* 1.3 62.4 + - - +
86F ASN* 3.3 10.2 + - - +
87F ARG* 3.1 43.0 + - - +
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Residues in contact with ALA 84 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1C C 3.7 17.3 - - - +
1C G 3.6 23.9 + - - +
80F SER 3.1 14.3 + - - +
81F LYS* 3.6 8.1 - - - +
83F LYS* 1.3 78.8 - - - +
85F GLN* 1.3 61.7 + - - +
87F ARG* 3.4 18.9 + - - +
88F ALA* 3.1 24.0 + - - +
91F ARG* 5.3 1.2 + - - -
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Residues in contact with GLN 85 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-7A A 5.4 0.3 - - - +
-6A G 2.8 59.4 + - + +
81F LYS 3.0 17.2 + - - +
82F ARG* 3.2 36.9 + - - +
84F ALA* 1.3 74.8 - - - +
86F ASN* 1.3 58.9 + - - +
88F ALA* 3.3 6.3 + - + +
89F ALA* 2.8 29.3 + - + +
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Residues in contact with ASN 86 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-5A G 4.2 1.0 - - - +
-4A T 4.2 5.2 - - - +
2B T 3.7 9.5 - - + +
3B A 3.4 43.5 + - + +
4B A 3.2 21.4 + - - +
78F PRO* 5.2 2.2 - - - +
82F ARG* 2.9 52.6 + - - +
83F LYS* 3.3 8.6 + - - +
85F GLN* 1.3 75.8 - - - +
87F ARG* 1.3 61.2 + - - +
89F ALA* 3.9 4.4 - - - +
90F GLN* 3.0 26.5 + - - +
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Residues in contact with ARG 87 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1B G 3.6 34.8 + - + +
2B T 2.9 45.3 + - + +
1C G 2.8 38.3 + - - +
2C T 4.9 3.4 + - - -
80F SER 4.8 1.8 + - - -
83F LYS* 3.1 27.3 + - - +
84F ALA* 3.5 23.2 - - - +
85F GLN 3.3 0.2 - - - -
86F ASN* 1.3 75.7 - - - +
88F ALA* 1.3 58.7 + - - +
90F GLN* 3.4 2.8 + - - +
91F ARG* 2.9 34.9 + - - +
94F ARG* 5.0 1.0 + - - -
87G ARG* 3.2 49.8 - - - +
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Residues in contact with ALA 88 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84F ALA 3.1 17.1 + - - +
85F GLN* 3.7 7.0 - - + +
87F ARG* 1.3 76.0 - - - +
89F ALA* 1.3 59.9 + - - +
91F ARG* 3.3 31.1 + - - +
92F ALA* 3.0 30.0 + - - +
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Residues in contact with ALA 89 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-6A G 4.4 5.8 - - + +
-5A G 4.0 46.7 + - + +
-4A T 3.6 7.5 - - + +
82F ARG* 5.5 0.4 - - - +
85F GLN* 2.8 23.5 + - + +
86F ASN* 3.9 6.7 - - - +
88F ALA* 1.3 73.5 - - - +
90F GLN* 1.3 57.7 + - - +
92F ALA* 3.8 2.5 - - - +
93F PHE* 3.0 28.8 + - - +
96F ARG* 4.5 2.3 + - - -
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Residues in contact with GLN 90 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-4A T 3.8 11.9 + - - +
-3A T 2.8 28.2 + - - +
-2A A 3.2 12.7 + - - -
-1A C 5.1 1.0 + - - -
1B G 4.1 5.6 - - - +
2B T 3.2 27.4 + - + +
3B A 3.5 4.9 - - - +
86F ASN 3.0 18.0 + - - +
87F ARG 3.7 4.3 - - - +
89F ALA* 1.3 75.8 - - - +
91F ARG* 1.3 59.0 + - - +
92F ALA 3.2 0.2 - - - -
93F PHE* 3.8 15.3 - - - +
94F ARG* 2.9 60.2 + - - +
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Residues in contact with ARG 91 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1B G 5.4 7.6 + - - +
1C G 5.4 7.1 + - - -
84F ALA 5.3 1.0 + - - -
87F ARG* 2.9 20.5 + - - +
88F ALA* 3.3 32.4 + - - +
90F GLN* 1.3 77.3 - - - +
92F ALA* 1.3 58.4 + - - +
94F ARG* 3.6 20.7 + - - +
95F LYS* 3.1 26.7 + - - +
91G ARG* 3.0 44.9 - - - +
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Residues in contact with ALA 92 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-5A G 4.9 3.4 - - - +
88F ALA 3.0 16.6 + - - +
89F ALA* 3.8 4.3 - - - +
91F ARG* 1.3 76.0 - - - +
93F PHE* 1.3 63.8 + - - +
95F LYS* 3.2 7.2 + - - +
96F ARG* 3.0 47.9 + - - +
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Residues in contact with PHE 93 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-4A T 3.3 64.2 - + + -
-3A T 3.3 35.0 - - + -
89F ALA 3.0 19.3 + - - +
90F GLN* 3.8 13.2 - - - +
92F ALA* 1.3 75.4 - - - +
94F ARG* 1.3 65.5 + - - +
96F ARG* 3.2 15.2 + - + +
97F LYS* 3.1 64.7 + - + +
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Residues in contact with ARG 94 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-2B A 6.0 0.2 - - - +
-1B C 3.4 53.1 + - - +
1B G 3.0 37.0 + - - -
87F ARG 5.0 1.0 + - - -
90F GLN* 2.9 45.1 + - - +
91F ARG* 3.6 25.3 + - - +
93F PHE* 1.3 81.9 - - + +
95F LYS* 1.3 61.9 - - - +
97F LYS* 3.4 6.8 + - - +
98F GLU* 3.2 26.8 + - + +
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Residues in contact with LYS 95 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91F ARG 3.1 13.6 + - - +
92F ALA* 3.6 10.3 - - - +
93F PHE 3.2 0.2 - - - -
94F ARG* 1.3 75.2 - - - +
96F ARG* 1.3 59.4 + - + +
98F GLU* 3.2 7.2 + - + +
99F ASP* 2.9 56.9 + - - +
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Residues in contact with ARG 96 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-5A G 3.8 27.6 + - - -
-4A T 2.6 31.6 + - - -
89F ALA 4.5 2.0 + - - -
92F ALA* 3.0 43.1 + - - +
93F PHE* 3.2 24.3 + - + +
95F LYS* 1.3 76.5 - - + +
97F LYS* 1.3 57.8 + - + +
99F ASP* 3.7 9.9 - - - +
100F HIS* 3.0 30.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 97 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-3A T 3.9 11.9 + - - -
98E GLU* 5.9 1.0 + - - -
101E LEU* 5.9 9.2 - - + +
93F PHE* 3.1 57.6 + - + +
94F ARG* 3.7 9.6 - - - +
95F LYS 3.2 0.4 - - - -
96F ARG* 1.3 76.5 - - + +
98F GLU* 1.3 59.4 + - + +
100F HIS* 3.5 10.2 + - + +
101F LEU* 3.0 28.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 98 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97E LYS* 4.1 19.8 + - - -
94F ARG* 3.2 15.5 + - + +
95F LYS* 3.2 12.0 + - + +
97F LYS* 1.3 75.4 - - + +
99F ASP* 1.3 67.1 + - - +
101F LEU* 3.3 24.8 + - - +
102F LYS* 3.0 62.6 + - - +
----------------------------------------------------------
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Residues in contact with ASP 99 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95F LYS* 2.9 52.5 + - - +
96F ARG* 3.7 9.4 - - - +
98F GLU* 1.3 76.6 - - - +
100F HIS* 1.3 56.7 + - - +
102F LYS* 3.4 13.9 + - - +
103F ALA* 2.9 29.7 + - - +
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Residues in contact with HIS 100 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101E LEU* 4.4 9.2 - - + -
105E GLU* 2.6 30.5 + - - -
96F ARG 3.0 18.2 + - - +
97F LYS* 3.7 11.2 - - + +
99F ASP* 1.3 75.6 - - - +
101F LEU* 1.3 59.1 + - - +
103F ALA* 3.6 7.8 - - - +
104F LEU* 3.0 52.5 + - + +
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Residues in contact with LEU 101 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97E LYS* 5.0 15.7 - - + +
100E HIS* 4.4 11.0 - - + -
101E LEU* 4.4 18.4 - - + +
104E LEU* 3.6 24.7 - - + -
97F LYS 3.0 19.0 + - - +
98F GLU* 3.3 28.9 + - - +
100F HIS* 1.3 78.0 - - - +
102F LYS* 1.3 61.5 + - + +
104F LEU* 3.2 7.3 + - - +
105F GLU* 3.0 41.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 102 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98F GLU* 3.0 45.1 + - - +
99F ASP* 3.8 11.5 + - - +
101F LEU* 1.3 77.5 - - + +
103F ALA* 1.3 60.7 + - - +
105F GLU* 3.4 9.3 + - + +
106F THR* 2.9 29.8 + - - -
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Residues in contact with ALA 103 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99F ASP 2.9 17.8 + - - +
100F HIS* 3.6 12.1 - - - +
101F LEU 3.2 0.2 - - - -
102F LYS* 1.3 78.9 - - - +
104F LEU* 1.3 56.6 + - - +
106F THR* 3.7 5.6 + - - +
107F GLN* 3.1 37.0 + - - +
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Residues in contact with LEU 104 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101E LEU* 3.9 14.6 - - + -
104E LEU* 4.1 20.0 - - + -
105E GLU* 3.4 43.1 - - + +
108E VAL* 3.9 19.9 - - + +
100F HIS* 3.0 38.1 + - + +
101F LEU* 3.2 5.3 + - - +
103F ALA* 1.3 75.2 - - + +
105F GLU* 1.3 65.3 + - - +
106F THR 3.2 0.2 - - - -
107F GLN* 3.6 21.3 - - - +
108F VAL* 3.0 30.1 + - - +
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Residues in contact with GLU 105 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100E HIS* 2.8 30.4 + - - -
104E LEU* 3.3 24.0 - - - +
101F LEU* 3.0 30.6 + - + +
102F LYS* 3.7 9.4 - - - +
104F LEU* 1.3 77.5 - - - +
106F THR* 1.3 59.3 + - - +
108F VAL* 3.0 24.2 - - - +
109F VAL* 3.2 15.5 - - - +
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Residues in contact with THR 106 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102F LYS 2.9 17.2 + - - -
103F ALA* 4.0 6.0 - - - -
105F GLU* 1.3 77.9 - - - +
107F GLN* 1.3 59.5 + - - +
109F VAL* 3.3 6.3 + - + +
110F THR* 2.8 43.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 107 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108E VAL* 3.2 28.4 - - + +
112E LYS* 4.1 22.6 + - - +
103F ALA* 3.1 30.1 + - + +
104F LEU* 3.2 17.9 + - - +
106F THR* 1.3 77.0 - - - +
108F VAL* 1.3 52.0 + - - +
110F THR* 4.4 4.9 - - - -
111F LEU* 2.7 48.4 + - + +
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Residues in contact with VAL 108 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104E LEU* 3.8 13.7 - - + -
107E GLN* 3.7 33.2 - - + +
108E VAL* 3.3 27.8 - - + -
111E LEU* 3.6 13.9 - - + +
104F LEU 3.0 13.9 + - - +
105F GLU* 3.0 32.5 - - - +
107F GLN* 1.3 75.5 - - - +
109F VAL* 1.3 66.9 + - + +
112F LYS* 3.0 35.7 + - + +
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Residues in contact with VAL 109 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105F GLU 3.2 16.4 - - - +
106F THR* 3.3 10.5 + - + +
107F GLN 3.3 0.4 - - - -
108F VAL* 1.3 80.1 - - + +
110F THR* 1.3 64.2 + - - +
112F LYS* 3.4 8.8 + - + +
113F GLU* 3.2 45.6 + - + +
----------------------------------------------------------
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Residues in contact with THR 110 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106F THR* 2.8 29.7 + - - +
107F GLN* 3.8 5.4 - - - +
109F VAL* 1.3 72.6 - - - +
111F LEU* 1.3 60.7 + - + +
112F LYS 3.1 4.2 + - - -
113F GLU* 3.2 15.3 + - - +
114F LEU* 2.9 40.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 111 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108E VAL* 4.0 13.0 - - + +
111E LEU* 3.9 33.2 - - + +
112E LYS* 3.5 34.1 - - + -
115E HIS* 4.1 31.1 - - + +
107F GLN* 2.7 33.8 + - + +
108F VAL 3.9 0.2 - - - -
110F THR* 1.3 75.1 - - + +
112F LYS* 1.3 57.6 + - - +
114F LEU* 3.8 19.7 - - + +
115F HIS* 3.1 25.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 112 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107E GLN* 3.6 24.0 + - - -
111E LEU* 3.9 16.8 - - + -
108F VAL* 3.0 27.7 + - + +
109F VAL* 3.6 8.3 - - - +
110F THR 3.1 0.4 - - - -
111F LEU* 1.3 77.6 - - - +
113F GLU* 1.3 60.1 + - + +
114F LEU 3.3 0.2 - - - -
115F HIS* 3.9 5.3 - - - +
116F SER* 3.1 27.9 + - - -
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Residues in contact with GLU 113 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109F VAL* 3.2 32.4 + - + +
110F THR* 3.2 13.2 + - - +
112F LYS* 1.3 77.2 - - + +
114F LEU* 1.3 63.4 + - - +
116F SER* 3.5 5.7 + - - -
117F SER* 3.2 26.0 + - - -
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Residues in contact with LEU 114 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115E HIS* 3.7 42.2 - - + +
110F THR* 2.9 27.7 + - + +
111F LEU* 3.9 22.9 - - + +
113F GLU* 1.3 78.6 - - - +
115F HIS* 1.3 58.6 + - - +
117F SER* 3.2 6.5 + - - +
118F THR* 3.1 43.2 + - + +
----------------------------------------------------------
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Residues in contact with HIS 115 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111E LEU* 5.8 4.7 - - + +
114E LEU* 3.5 46.7 + - + +
115E HIS* 5.2 6.7 + - - +
118E THR* 3.8 20.1 + - + -
111F LEU 3.1 20.2 + - - +
112F LYS* 3.9 6.1 - - - +
113F GLU 3.3 0.2 - - - -
114F LEU* 1.3 75.4 - - - +
116F SER* 1.3 65.3 + - - +
117F SER 3.2 0.4 - - - -
118F THR* 3.5 3.1 + - - -
119F THR* 3.0 56.2 + - + +
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Residues in contact with SER 116 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112F LYS 3.1 16.3 + - - -
113F GLU* 3.9 7.0 - - - -
114F LEU 3.4 0.2 - - - -
115F HIS* 1.3 82.3 - - - +
117F SER* 1.3 59.8 + - - +
119F THR* 4.2 4.0 - - - -
120F LEU* 3.5 20.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 117 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113F GLU 3.2 13.8 + - - -
114F LEU* 3.2 16.3 + - - +
116F SER* 1.3 77.4 - - - +
118F THR* 1.3 71.4 + - - +
119F THR 3.2 1.3 - - - -
120F LEU* 3.3 8.8 + - - +
121F GLU* 3.2 22.3 + - - +
----------------------------------------------------------
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Residues in contact with THR 118 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115E HIS* 4.7 4.3 + - + +
118E THR* 3.4 28.1 + - - -
119E THR* 4.7 13.5 - - - +
122E ASN* 4.7 5.8 + - + +
114F LEU* 3.1 32.9 + - + +
115F HIS* 3.5 5.7 + - - -
117F SER* 1.3 85.2 + - - +
119F THR* 1.3 59.3 + - - +
121F GLU* 3.5 10.5 + - - +
122F ASN* 3.1 34.2 + - - +
----------------------------------------------------------
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Residues in contact with THR 119 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118E THR* 3.8 10.5 - - + +
115F HIS* 3.0 46.3 + - + +
116F SER* 4.5 4.0 - - - -
118F THR* 1.3 78.2 - - - +
120F LEU* 1.3 59.7 + - - +
121F GLU 3.3 0.2 - - - -
122F ASN* 3.5 10.6 + - + +
123F ASP* 3.2 33.3 + - - +
126F ARG* 5.8 1.1 - - - +
----------------------------------------------------------
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Residues in contact with LEU 120 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116F SER 3.5 19.6 + - - +
117F SER* 3.3 9.6 + - - +
118F THR 3.3 0.4 - - - -
119F THR* 1.3 76.6 - - - +
121F GLU* 1.3 63.9 + - - +
123F ASP* 3.4 17.7 + - + +
124F GLN* 3.2 44.6 + - + +
----------------------------------------------------------
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Residues in contact with GLU 121 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122E ASN* 2.9 22.7 + - - +
126E ARG* 2.8 32.8 + - - -
117F SER 3.2 15.7 + - - +
118F THR* 3.7 11.2 - - - +
119F THR 3.3 0.2 - - - -
120F LEU* 1.3 77.8 - - - +
122F ASN* 1.3 58.6 + - - +
123F ASP 3.3 0.2 - - - -
124F GLN* 3.6 15.5 + - + +
125F LEU* 3.0 43.7 + - + +
----------------------------------------------------------
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Residues in contact with ASN 122 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118E THR* 3.1 31.9 + - - +
121E GLU* 3.2 23.3 + - - +
122E ASN* 3.3 31.7 + - - +
125E LEU* 3.6 8.8 - - + +
118F THR 3.1 19.2 + - - +
119F THR* 3.7 9.0 - - + +
120F LEU 3.2 0.2 - - - -
121F GLU* 1.3 78.2 - - - +
123F ASP* 1.3 58.6 + - - +
125F LEU* 4.9 0.2 - - - +
126F ARG* 3.0 52.7 + - - +
----------------------------------------------------------
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Residues in contact with ASP 123 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119F THR* 3.2 23.1 + - - +
120F LEU* 3.5 22.4 - - + +
121F GLU 3.3 0.4 - - - -
122F ASN* 1.3 78.9 - - - +
124F GLN* 1.3 58.6 + - + +
126F ARG* 2.7 34.9 + - - +
127F GLN* 3.2 28.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 124 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120F LEU* 3.2 35.7 + - + +
121F GLU* 3.9 17.0 - - + +
122F ASN 3.3 0.2 - - - -
123F ASP* 1.3 79.6 - - + +
125F LEU* 1.3 59.5 - - + +
127F GLN* 3.8 5.5 + - - +
128F LYS* 3.2 25.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 125 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122E ASN* 3.9 22.7 - - - +
125E LEU* 3.7 34.3 - - + +
126E ARG* 4.0 26.2 - - + +
129E VAL* 5.5 8.1 - - + -
121F GLU* 3.0 34.1 + - + +
123F ASP 3.3 0.2 - - - -
124F GLN* 1.3 81.0 - - + +
126F ARG* 1.3 59.2 + - - +
127F GLN 3.3 0.4 - - - -
128F LYS* 3.6 13.4 - - + +
129F VAL* 3.0 32.7 + - - +
----------------------------------------------------------
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Residues in contact with ARG 126 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121E GLU* 2.9 27.7 + - - -
125E LEU* 3.4 23.1 - - + -
119F THR* 5.1 2.2 + - - +
122F ASN* 3.0 43.0 + - - +
123F ASP* 2.7 32.4 + - - +
125F LEU* 1.3 75.8 - - - +
127F GLN* 1.3 60.4 + - - +
128F LYS 3.2 0.2 - - - -
129F VAL* 3.9 7.0 - - - +
130F ARG* 3.0 26.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 127 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123F ASP 3.2 18.7 + - - +
124F GLN* 4.1 6.1 - - - +
126F ARG* 1.3 77.8 - - - +
128F LYS* 1.3 58.5 + - - +
129F VAL 3.3 0.2 - - - -
130F ARG* 3.6 7.5 + - - +
131F GLN* 3.1 27.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 128 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129E VAL* 3.6 24.7 - - + +
133E GLU* 3.4 22.5 + - - -
124F GLN 3.2 20.9 + - - +
125F LEU* 3.6 15.9 - - + +
127F GLN* 1.3 78.3 - - - +
129F VAL* 1.3 58.8 + - - +
131F GLN* 3.6 20.9 - - - +
132F LEU* 3.3 49.7 + - + +
----------------------------------------------------------
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Residues in contact with VAL 129 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125E LEU* 4.2 21.5 - - + +
128E LYS* 4.2 31.2 - - + +
129E VAL* 4.4 7.0 - - + -
132E LEU* 4.0 10.1 - - + -
125F LEU 3.0 20.9 + - - +
126F ARG* 3.9 7.9 - - - +
127F GLN 3.3 0.2 - - - -
128F LYS* 1.3 75.0 - - - +
130F ARG* 1.3 59.3 + - - +
131F GLN 3.1 1.8 - - - -
132F LEU* 3.4 5.3 + - - +
133F GLU* 2.9 50.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 130 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126F ARG 3.0 17.7 + - - +
127F GLN* 3.9 9.2 - - - +
128F LYS 3.4 0.2 - - - -
129F VAL* 1.3 76.8 - - - +
131F GLN* 1.3 58.5 + - - +
133F GLU* 4.0 11.4 - - - +
134F GLU* 3.5 23.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 131 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127F GLN 3.1 16.7 + - - +
128F LYS* 3.6 24.2 - - - +
130F ARG* 1.3 76.9 - - - +
132F LEU* 1.3 77.7 + - + +
133F GLU 3.3 0.2 - - - -
134F GLU* 3.6 4.1 + - - +
135F GLU* 3.1 38.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 132 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129E VAL* 4.0 24.0 - - + +
132E LEU* 4.2 25.4 - - + +
133E GLU* 3.5 34.8 - - + +
136E LEU* 4.2 14.9 - - + +
128F LYS* 3.3 33.2 + - - +
129F VAL* 3.4 4.2 + - - +
131F GLN* 1.3 92.5 - - + +
133F GLU* 1.3 58.9 + - - +
134F GLU 3.4 0.2 - - - -
135F GLU* 3.7 11.9 - - - +
136F LEU* 3.1 28.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 133 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128E LYS* 4.7 9.5 - - - -
132E LEU* 3.4 24.6 - - + +
129F VAL* 2.9 39.0 + - - +
130F ARG* 4.2 10.8 - - - +
131F GLN 3.3 0.2 - - - -
132F LEU* 1.3 78.1 - - - +
134F GLU* 1.3 58.9 + - - +
136F LEU* 4.1 5.2 - - - +
137F ARG* 3.2 23.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 134 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130F ARG 3.5 16.6 + - - +
131F GLN* 4.2 2.9 - - - +
133F GLU* 1.3 75.0 - - - +
135F GLU* 1.3 61.3 + - - +
136F LEU 3.2 1.8 - - - -
137F ARG* 3.1 39.1 + - - +
138F ILE* 3.0 49.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU 135 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136E LEU* 3.2 34.7 - - + +
131F GLN* 3.1 34.5 + - - +
132F LEU* 3.9 9.9 - - - +
133F GLU 3.4 0.2 - - - -
134F GLU* 1.3 77.5 - - - +
136F LEU* 1.3 57.0 + - - +
138F ILE* 4.6 6.1 - - - +
139F LEU* 3.4 33.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 136 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132E LEU* 4.6 18.4 - - + +
135E GLU* 3.6 50.9 - - + +
136E LEU* 3.7 22.0 - - + -
139E LEU 5.1 5.2 - - - -
132F LEU 3.1 16.6 + - - +
133F GLU* 4.1 4.9 - - - +
135F GLU* 1.3 75.1 - - - +
137F ARG* 1.3 62.1 + - - +
138F ILE 3.2 1.8 - - - -
140F LYS* 3.0 45.2 + - + +
----------------------------------------------------------
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Residues in contact with ARG 137 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133F GLU 3.2 19.6 + - - +
134F GLU* 3.1 44.2 + - - +
136F LEU* 1.3 79.3 - - - +
138F ILE* 1.3 72.7 + - - +
140F LYS* 3.7 13.1 - - - +
----------------------------------------------------------
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Residues in contact with ILE 138 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134F GLU* 3.0 38.2 + - + +
135F GLU* 4.2 5.4 - - - +
136F LEU 3.2 0.2 - - - -
137F ARG* 1.3 97.4 - - - +
139F LEU* 1.3 73.1 + - + +
140F LYS* 3.2 11.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 139 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136E LEU* 4.1 24.7 - - + +
139E LEU 4.5 19.3 - - - +
135F GLU* 3.4 29.0 + - + +
136F LEU* 3.7 0.6 + - - +
138F ILE* 1.3 92.3 - - + +
140F LYS* 1.3 58.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 140 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139E LEU 5.7 4.9 - - - -
136F LEU* 3.0 31.3 + - + +
137F ARG* 3.7 13.0 - - - +
138F ILE 3.2 5.0 - - - +
139F LEU* 1.3 80.2 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il