Contacts of the helix formed by residues 374 - 399 (chain G) in PDB entry 1GLE


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASN 374 (chain G).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    332G  PHE*     3.1    50.3    -      -       -      +
    333G  ALA*     4.6     1.0    -      -       -      -
    335G  LYS*     3.8    25.3    -      -       -      +
    336G  VAL*     3.9    20.0    -      -       +      +
    372G  ASN*     3.2    14.0    +      -       -      +
    373G  ALA*     1.3    80.2    -      -       -      +
    375G  HIS*     1.3    65.3    +      -       -      +
    376G  ILE      3.3     0.2    +      -       -      -
    377G  ILE*     3.8     7.8    -      -       -      +
    378G  ARG*     3.3    21.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 375 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    336G  VAL*     3.8    17.7    -      -       +      +
    338G  ASN*     3.1    30.2    +      -       -      -
    339G  THR*     3.2    21.7    -      -       -      +
    340G  ASN*     3.1    32.0    +      -       +      +
    342G  VAL*     4.5     1.8    -      -       +      -
    370G  GLY      4.1     4.5    -      -       -      -
    371G  VAL*     3.4    15.8    -      -       +      -
    372G  ASN*     2.7    53.7    +      -       -      +
    374G  ASN*     1.3    71.8    -      -       -      +
    376G  ILE*     1.3    58.3    +      -       -      +
    378G  ARG*     3.3     5.0    +      -       -      +
    379G  ALA*     2.9    29.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 376 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    315G  TRP*     6.0     2.0    -      -       +      -
    316G  LEU*     5.1     6.5    -      -       +      -
    320G  MET*     6.3     1.8    -      -       +      -
    322G  LEU*     4.7    16.2    -      -       +      -
    342G  VAL*     4.6    12.1    -      -       +      -
    344G  VAL*     5.0     1.6    -      -       +      -
    364G  ILE*     4.8    23.1    -      -       +      -
    367G  LEU*     4.7    12.3    -      -       +      -
    371G  VAL*     4.1    16.6    -      -       +      +
    372G  ASN*     3.3    18.4    +      -       -      +
    373G  ALA*     3.5    10.1    -      -       -      +
    375G  HIS*     1.3    75.2    -      -       -      +
    377G  ILE*     1.3    67.4    +      -       -      +
    379G  ALA*     3.1    12.8    +      -       -      +
    380G  THR*     3.0    22.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 377 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    316G  LEU*     3.7    27.8    -      -       +      +
    322G  LEU*     4.5    16.4    -      -       +      +
    323G  ILE*     3.8    25.8    -      -       +      -
    329G  SER*     4.1    32.8    -      -       -      +
    332G  PHE*     4.0    21.8    -      -       +      -
    333G  ALA*     4.1     4.7    -      -       +      +
    373G  ALA*     3.0    18.9    +      -       +      +
    374G  ASN*     3.8     9.4    -      -       -      +
    375G  HIS      3.4     0.2    -      -       -      -
    376G  ILE*     1.3    74.3    -      -       -      +
    378G  ARG*     1.3    59.7    +      -       -      +
    380G  THR*     2.6    27.2    +      -       -      -
    381G  LEU*     2.8    12.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 378 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    333G  ALA*     3.2    42.1    +      -       +      -
    334G  THR*     4.8     2.8    -      -       -      +
    336G  VAL*     3.9    13.5    -      -       -      -
    337G  GLN*     3.1    46.3    +      -       -      +
    338G  ASN*     4.0    11.0    -      -       -      +
    339G  THR*     3.8    10.8    -      -       +      -
    374G  ASN      3.3    11.1    +      -       -      +
    375G  HIS      4.0     1.8    -      -       -      +
    376G  ILE      3.3     0.6    -      -       -      -
    377G  ILE*     1.3    82.0    -      -       -      +
    379G  ALA*     1.3    58.1    +      -       -      +
    381G  LEU*     3.5     4.9    -      -       -      +
    382G  GLU*     2.6    52.4    +      -       +      +
    417G  PHE*     3.7    31.4    -      -       +      -
    421G  PHE*     4.7     6.3    -      -       -      -
    482G  ARG*     5.6     4.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 379 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    339G  THR*     3.8    18.4    -      -       +      -
    342G  VAL*     4.0    20.2    -      -       +      +
    343G  TYR*     4.7     0.6    -      -       -      -
    344G  VAL*     3.3    28.8    +      -       +      +
    375G  HIS      2.9    13.6    +      -       -      +
    376G  ILE      3.3     7.0    -      -       -      +
    377G  ILE      3.0     0.2    -      -       -      -
    378G  ARG*     1.3    77.8    -      -       -      +
    380G  THR*     1.3    62.4    +      -       -      +
    382G  GLU*     3.1     5.9    +      -       -      +
    383G  SER*     3.0    21.7    +      -       -      -
    386G  TYR*     5.6     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with THR 380 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    312G  SER*     3.3    36.7    -      -       -      +
    313G  ILE*     3.8    13.5    -      -       +      -
    315G  TRP*     5.4     1.6    -      -       +      -
    316G  LEU*     3.9    23.6    -      -       +      +
    344G  VAL*     3.2    22.4    -      -       +      +
    348G  PHE*     6.4     0.2    -      -       +      -
    376G  ILE*     3.0    13.2    +      -       -      +
    377G  ILE      2.6    12.3    +      -       -      -
    379G  ALA*     1.3    74.5    -      -       -      +
    381G  LEU*     1.3    61.6    +      -       -      +
    383G  SER*     2.5    27.4    +      -       -      +
    384G  ILE*     3.6     5.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 381 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    313G  ILE*     3.5    32.1    -      -       +      -
    329G  SER*     4.0    29.4    -      -       -      +
    330G  GLU*     4.9     0.2    -      -       -      -
    333G  ALA*     4.1     3.1    -      -       +      -
    377G  ILE*     2.8    15.0    +      -       +      +
    378G  ARG*     3.1     8.9    +      -       -      +
    380G  THR*     1.3    75.9    -      -       -      +
    382G  GLU*     1.3    64.6    +      -       -      +
    384G  ILE*     3.1    29.0    +      -       +      +
    415G  ASN*     3.7    27.4    -      -       -      +
    417G  PHE*     4.0    28.5    -      -       +      -
    418G  LEU*     3.8    17.5    -      -       +      +
    504G  ADP      4.9     3.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 382 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    338G  ASN*     5.6     0.2    -      -       -      -
    339G  THR*     3.7    21.8    +      -       -      +
    343G  TYR*     4.6     5.3    -      -       +      -
    378G  ARG*     2.6    51.1    +      -       +      +
    379G  ALA*     3.1     6.3    +      -       -      +
    381G  LEU*     1.3    75.9    -      -       -      +
    383G  SER*     1.3    63.4    +      -       -      +
    384G  ILE      2.9     1.4    +      -       -      -
    385G  ALA*     3.0    15.2    +      -       -      +
    386G  TYR*     2.9    47.2    +      -       +      -
    417G  PHE*     5.0     4.0    -      -       +      -
    421G  PHE*     3.5    38.4    -      -       +      -
    482G  ARG*     5.4     5.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 383 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    312G  SER*     5.1     0.9    +      -       -      -
    344G  VAL*     3.3    27.0    +      -       -      +
    346G  PRO*     3.5    27.9    -      -       -      +
    379G  ALA      3.0     7.6    +      -       -      -
    380G  THR*     2.5    25.9    +      -       -      +
    382G  GLU*     1.3    72.7    -      -       -      +
    384G  ILE*     1.3    58.0    +      -       -      +
    386G  TYR*     2.8    11.9    +      -       -      +
    387G  GLN*     2.7    41.0    +      -       -      +
    486G  TRP*     4.0     5.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 384 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    265G  TYR*     3.7    33.2    -      -       +      -
    269G  CYS*     4.1    11.6    -      -       -      -
    308G  MET      5.2     1.3    -      -       -      +
    309G  ALA*     3.7    38.1    -      -       +      +
    310G  GLY*     4.4     1.6    -      -       -      +
    312G  SER*     5.7     1.6    -      -       -      -
    313G  ILE*     4.5     7.9    -      -       +      -
    346G  PRO*     6.3     0.2    -      -       +      -
    380G  THR      3.9     7.0    -      -       -      +
    381G  LEU*     3.4    26.9    -      -       +      +
    382G  GLU      2.9     1.2    -      -       -      -
    383G  SER*     1.3    81.4    -      -       -      +
    385G  ALA*     1.3    62.7    +      -       -      +
    387G  GLN*     3.2     7.5    +      -       -      +
    388G  THR*     2.9    24.0    +      -       -      -
    412G  ALA*     5.4     5.2    -      -       +      -
    418G  LEU*     4.1    22.2    -      -       +      -
    504G  ADP      5.8     0.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 385 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    381G  LEU      4.0     1.0    +      -       -      -
    382G  GLU      3.0    10.9    +      -       -      +
    384G  ILE*     1.3    75.9    -      -       -      +
    386G  TYR*     1.3    65.4    +      -       -      +
    388G  THR      3.7     0.2    -      -       -      -
    389G  ARG*     2.9    21.1    +      -       -      +
    418G  LEU*     4.3     5.8    -      -       +      +
    421G  PHE*     3.6    30.7    -      -       +      -
    422G  GLN*     3.2    37.8    +      -       -      +
    425G  ILE*     3.8     6.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 386 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    343G  TYR*     3.8    19.8    +      +       -      -
    379G  ALA      5.6     0.2    -      -       -      -
    382G  GLU*     2.9    61.3    +      -       +      -
    383G  SER*     2.8     7.0    +      -       -      +
    385G  ALA*     1.3    79.3    -      -       -      +
    387G  GLN*     1.3    64.2    +      -       -      +
    389G  ARG*     3.0     7.3    +      -       -      +
    390G  ASP*     2.8    25.3    +      -       -      +
    421G  PHE*     3.8     8.6    -      +       -      -
    425G  ILE*     3.4    27.8    -      -       +      -
    482G  ARG*     3.6    39.8    +      -       -      +
    483G  TYR*     3.8    19.5    -      +       -      -
    486G  TRP*     3.3    39.9    -      +       +      +
----------------------------------------------------------
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Residues in contact with GLN 387 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    269G  CYS*     6.0     0.7    -      -       +      -
    306G  VAL*     3.4    37.3    -      -       +      +
    307G  PHE      5.3     0.2    -      -       -      +
    308G  MET      3.0    23.5    +      -       -      +
    346G  PRO*     3.9    25.9    +      -       -      +
    351G  LEU*     4.7    15.0    -      -       -      +
    355G  TYR*     5.9     2.9    -      -       +      -
    383G  SER*     2.7    21.5    +      -       -      +
    384G  ILE*     3.6     6.2    +      -       +      +
    386G  TYR*     1.3    75.3    -      -       -      +
    388G  THR*     1.3    64.9    +      -       -      +
    390G  ASP*     2.7    22.6    +      -       -      +
    391G  VAL*     2.9    14.6    +      -       -      +
    486G  TRP*     3.5    24.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 388 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    263G  ASN*     3.3    32.0    +      -       -      +
    265G  TYR*     3.5     9.7    +      -       -      +
    269G  CYS*     4.2     6.8    -      -       -      -
    271G  MET*     4.2     9.0    -      -       +      -
    306G  VAL*     5.1     2.0    -      -       -      +
    384G  ILE      2.9    16.0    +      -       -      -
    385G  ALA      3.5     1.8    -      -       -      -
    387G  GLN*     1.3    77.2    -      -       -      +
    389G  ARG*     1.3    68.6    +      -       -      +
    391G  VAL*     3.0     8.3    +      -       -      +
    392G  LEU*     2.9    19.8    +      -       +      +
    406G  LEU*     4.6     5.8    -      -       +      -
    422G  GLN*     3.1    32.5    +      -       -      +
    426G  LEU*     4.8     2.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 389 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    385G  ALA      2.9    15.1    +      -       -      +
    386G  TYR*     3.4     4.7    -      -       -      +
    388G  THR*     1.3    86.5    -      -       -      +
    390G  ASP*     1.3    63.7    +      -       -      +
    392G  LEU*     3.2     1.5    +      -       -      +
    393G  GLU*     3.1    47.7    +      -       +      +
    422G  GLN*     4.7     0.9    -      -       -      +
    425G  ILE*     2.8    39.6    +      -       +      +
    426G  LEU*     4.0    26.7    +      -       +      +
    479G  ARG*     3.9    13.7    -      -       -      +
    480G  ASN*     3.3    30.1    +      -       -      +
    483G  TYR*     3.6    49.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 390 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    353G  ALA      5.2     1.1    -      -       -      +
    354G  PRO*     4.1    19.8    -      -       +      +
    355G  TYR*     2.6    37.2    +      -       +      +
    386G  TYR      2.8     8.6    +      -       -      -
    387G  GLN*     2.7    16.1    +      -       -      +
    389G  ARG*     1.3    74.8    -      -       -      +
    391G  VAL*     1.3    65.9    +      -       +      +
    393G  GLU*     3.4     9.2    +      -       -      +
    394G  ALA*     3.4    10.9    +      -       -      +
    483G  TYR*     2.5    41.5    +      -       -      +
    486G  TRP*     3.0    22.1    +      -       -      -
    487G  LYS*     3.6     4.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 391 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    263G  ASN*     5.1     1.1    -      -       -      +
    271G  MET*     3.6    35.0    -      -       +      -
    286G  LEU*     3.7    13.0    -      -       +      +
    304G  GLY*     3.5    30.7    -      -       -      +
    306G  VAL*     4.7    10.1    -      -       +      -
    353G  ALA*     3.9    18.4    -      -       +      +
    354G  PRO*     4.8     2.2    -      -       +      -
    387G  GLN      2.9     8.4    +      -       -      +
    388G  THR*     3.7    10.5    -      -       -      +
    390G  ASP*     1.3    80.5    -      -       +      +
    392G  LEU*     1.3    67.5    +      -       -      +
    394G  ALA*     3.1     8.4    -      -       +      +
    395G  MET*     3.0    20.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 392 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    271G  MET*     3.4    28.9    -      -       +      -
    388G  THR*     2.9    12.6    +      -       +      +
    389G  ARG*     3.6     7.2    -      -       -      +
    390G  ASP      3.1     0.4    -      -       -      -
    391G  VAL*     1.3    82.5    -      -       -      +
    393G  GLU*     1.3    78.1    +      -       +      +
    395G  MET*     3.0     6.0    +      -       +      +
    396G  GLN*     2.9    50.3    +      -       +      +
    403G  LEU*     4.9    11.4    -      -       +      -
    406G  LEU*     4.7    13.7    -      -       +      -
    426G  LEU*     4.2    24.9    -      -       +      -
    428G  THR*     5.9     4.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 393 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    389G  ARG*     3.1    54.7    +      -       +      +
    390G  ASP      4.0     4.0    -      -       -      +
    392G  LEU*     1.3    87.3    -      -       +      +
    394G  ALA*     1.3    64.5    +      -       -      +
    396G  GLN*     3.1     6.4    +      -       -      +
    397G  ALA*     3.0    22.9    +      -       -      +
    483G  TYR*     4.1    16.2    +      -       -      +
    487G  LYS*     4.9     3.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 394 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    284G  ASN*     3.6    26.1    -      -       -      +
    286G  LEU*     3.5    20.0    -      -       +      -
    354G  PRO*     5.0     7.0    -      -       +      -
    390G  ASP      3.4     8.9    +      -       -      +
    391G  VAL*     3.1    14.4    -      -       +      +
    393G  GLU*     1.3    79.6    -      -       -      +
    395G  MET*     1.3    63.3    +      -       -      +
    396G  GLN      3.0     0.3    +      -       -      -
    397G  ALA*     3.1     5.0    +      -       -      +
    398G  ASP*     2.9    27.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 395 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    261G  ALA*     5.4     0.9    -      -       +      -
    271G  MET*     3.2    61.2    -      -       +      +
    272G  LEU*     3.8    10.8    -      -       -      +
    273G  MET*     4.1    26.7    -      -       +      +
    286G  LEU*     3.4    12.3    -      -       +      +
    302G  LEU*     3.9    27.3    -      -       -      +
    303G  GLU      5.1     0.2    -      -       -      -
    304G  GLY      4.7     3.4    -      -       -      +
    391G  VAL*     3.0     9.5    +      -       +      +
    392G  LEU*     3.3    14.1    -      -       +      +
    394G  ALA*     1.3    80.6    -      -       -      +
    396G  GLN*     1.3    62.6    +      -       +      +
    398G  ASP*     3.8     2.5    -      -       -      +
    399G  SER*     2.9    28.6    +      -       -      +
    403G  LEU*     5.0     7.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 396 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    392G  LEU*     2.9    38.0    +      -       +      +
    393G  GLU*     3.6     8.3    -      -       -      +
    394G  ALA      3.0     0.4    -      -       -      -
    395G  MET*     1.3    77.3    -      -       +      +
    397G  ALA*     1.3    56.6    +      -       -      +
    399G  SER*     3.1     2.8    +      -       -      -
    400G  GLY*     2.7    36.9    +      -       -      -
    401G  ILE      3.1    22.0    +      -       -      +
    402G  ARG*     3.6    17.2    -      -       -      +
    403G  LEU*     2.8    49.3    +      -       +      +
    428G  THR*     6.0     0.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 397 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    284G  ASN*     3.4    24.0    -      -       -      +
    393G  GLU      3.0    12.6    +      -       -      +
    394G  ALA*     3.5     6.5    -      -       -      +
    396G  GLN*     1.3    76.1    -      -       -      +
    398G  ASP*     1.3    64.4    +      -       -      +
    400G  GLY*     3.4     8.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 398 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    280G  VAL*     4.4    11.0    -      -       -      +
    281G  LYS      4.2     2.9    -      -       -      +
    282G  SER*     2.3    37.4    +      -       -      -
    283G  GLU*     2.9    19.9    +      -       -      +
    284G  ASN*     2.7    26.3    +      -       -      +
    286G  LEU*     3.9     8.1    -      -       +      +
    302G  LEU*     4.1    16.0    -      -       +      +
    394G  ALA      2.9    12.8    +      -       -      +
    395G  MET*     3.8     4.9    -      -       -      +
    397G  ALA*     1.3    81.3    -      -       -      +
    399G  SER*     1.3    57.1    +      -       -      +
    400G  GLY      3.3     0.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 399 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    273G  MET*     4.1    24.4    -      -       -      +
    275G  THR*     6.1     1.1    -      -       -      -
    280G  VAL*     5.5     3.6    -      -       -      -
    302G  LEU*     4.6    10.8    -      -       -      -
    395G  MET*     2.9    20.2    +      -       -      +
    396G  GLN*     3.1     2.3    +      -       -      -
    398G  ASP*     1.3    77.6    -      -       -      +
    400G  GLY*     1.3    53.0    +      -       -      +
    401G  ILE*     2.5    48.1    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il