Contacts of the helix formed by residues 44 - 73 (chain A) in PDB entry 1GWG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 44 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A PHE* 3.0 30.1 + - + +
42A VAL* 3.7 14.4 - - + +
43A ALA* 1.3 80.1 - - - +
45A GLU* 1.3 65.2 + - - +
46A GLY 3.3 2.5 - - - -
47A VAL* 2.9 23.5 + - + +
48A CYS 3.0 11.1 + - - -
92A THR* 3.5 11.9 - - - +
163A GLU* 3.3 40.4 - - + +
164A TYR* 4.8 10.5 - - + -
167A GLU* 4.0 26.5 - - + +
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Residues in contact with GLU 45 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43A ALA 3.7 3.4 + - - -
44A LEU* 1.3 72.8 - - - +
46A GLY* 1.3 64.1 + - - +
48A CYS* 3.3 4.9 + - - +
49A HIS* 2.9 26.4 + - + +
167A GLU* 3.5 7.9 + - - +
168A ARG* 4.2 13.9 + - - +
1175A IOD 4.1 12.1 - - + -
1176A IOD 3.7 19.4 - - + +
1177A IOD 4.2 10.3 - - + -
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Residues in contact with GLY 46 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A GLU* 1.3 76.7 - - - +
47A VAL* 1.3 60.5 + - - +
49A HIS* 3.5 6.0 + - - +
50A PHE* 3.2 22.3 + - - +
167A GLU* 2.7 28.7 + - - -
171A LEU* 3.8 28.3 - - - +
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Residues in contact with VAL 47 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A PHE* 3.4 36.3 - - + -
44A LEU* 2.9 21.2 + - + +
46A GLY* 1.3 73.9 - - - +
48A CYS* 1.3 68.3 + - - +
50A PHE* 3.2 5.1 + - + +
51A PHE* 3.1 40.0 + - + -
92A THR* 3.7 28.5 - - + +
96A MET* 6.0 1.1 - - + -
167A GLU* 3.9 9.1 - - + +
171A LEU* 3.5 23.8 - - + -
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Residues in contact with CYS 48 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A GLY* 3.1 35.2 - - - +
35A PHE* 5.0 0.9 - - - -
37A PHE* 3.7 12.0 - - + +
38A ASP* 3.8 6.7 - - - -
44A LEU 3.0 11.9 + - - +
45A GLU 3.6 5.4 - - - +
47A VAL* 1.3 77.7 - - - +
49A HIS* 1.3 56.8 + - - +
51A PHE 3.3 0.3 + - - -
52A ARG* 3.0 33.7 + - - +
1174A IOD 2.2 42.0 - - + -
1175A IOD 3.6 12.1 - - + -
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Residues in contact with HIS 49 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A GLU* 2.9 20.7 + - + +
46A GLY* 4.0 6.3 - - - +
48A CYS* 1.3 74.2 - - - +
50A PHE* 1.3 60.9 + - - +
52A ARG* 3.9 5.4 - - + +
53A GLU* 2.9 63.5 + - + +
1174A IOD 4.2 5.2 - - + -
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Residues in contact with PHE 50 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A GLY 3.2 14.8 + - - +
47A VAL* 3.5 9.4 - - + +
49A HIS* 1.3 77.6 - - - +
51A PHE* 1.3 88.8 + + - +
53A GLU* 3.5 5.9 + - + +
54A LEU* 3.2 47.7 + - + +
96A MET* 3.7 27.4 - - + -
140A LEU* 5.1 2.5 - - + -
143A LYS* 4.0 26.5 - - + -
144A MET* 4.3 13.0 - - + -
147A HIS* 3.9 26.5 - + - -
171A LEU* 4.4 18.6 - - + -
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Residues in contact with PHE 51 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A TYR* 3.3 37.9 - + + +
33A LEU* 3.8 16.8 - - + -
34A GLY* 3.7 20.0 - - - +
37A PHE* 3.8 17.0 - + - -
47A VAL* 3.1 41.2 + - + +
50A PHE* 1.3 108.0 - + - +
52A ARG* 1.3 59.5 + - - +
54A LEU* 3.2 3.3 + - + +
55A ALA* 2.9 24.3 + - - +
92A THR* 5.6 0.9 - - + -
95A ALA* 3.9 26.7 - - + -
96A MET* 4.4 7.6 - - + -
99A ALA* 3.8 21.3 - - + -
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Residues in contact with ARG 52 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A TYR 4.7 1.8 - - - +
31A LEU* 4.8 10.0 - - + +
34A GLY* 3.9 16.2 - - - -
35A PHE* 3.8 39.2 - - + -
48A CYS* 3.0 33.4 + - - +
49A HIS* 3.9 9.0 - - + +
51A PHE* 1.3 76.9 - - - +
53A GLU* 1.3 63.8 + - + +
55A ALA* 3.3 15.6 + - - +
56A GLU* 3.3 14.6 + - - +
1174A IOD 4.2 4.9 - - - -
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Residues in contact with GLU 53 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49A HIS* 2.9 52.6 + - + +
50A PHE* 3.8 6.3 - - - +
52A ARG* 1.3 78.3 - - - +
54A LEU* 1.3 57.8 + - + +
56A GLU* 3.3 26.4 + - - +
57A GLU* 3.1 39.4 + - - +
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Residues in contact with LEU 54 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A TYR* 3.7 27.8 - - + -
50A PHE* 3.2 46.9 + - + +
51A PHE* 3.2 9.4 + - + +
53A GLU* 1.3 73.2 - - + +
55A ALA* 1.3 67.1 + - - +
57A GLU* 3.1 28.7 + - + +
58A LYS* 3.0 28.2 + - - +
103A GLU* 5.0 0.2 - - - +
140A LEU* 3.7 30.1 - - + -
144A MET* 3.7 17.9 - - + -
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Residues in contact with ALA 55 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A SER* 2.6 47.3 + - - +
30A TYR* 3.5 16.1 - - + +
31A LEU* 3.8 16.8 - - + +
51A PHE 2.9 8.6 + - - +
52A ARG* 3.6 11.0 - - - +
53A GLU 3.3 0.4 - - - -
54A LEU* 1.3 78.7 - - - +
56A GLU* 1.3 61.6 + - - +
58A LYS 3.4 0.2 + - - -
59A ARG* 3.1 11.6 + - - +
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Residues in contact with GLU 56 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52A ARG 3.3 8.9 + - - +
53A GLU* 3.3 31.5 + - - +
54A LEU 3.2 0.4 - - - -
55A ALA* 1.3 78.0 - - - +
57A GLU* 1.3 59.6 + - + +
59A ARG* 3.2 33.2 + - - +
60A GLU* 2.9 49.4 + - - +
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Residues in contact with GLU 57 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A TYR* 5.2 0.2 - - - -
53A GLU* 3.1 26.6 + - - +
54A LEU* 3.1 32.2 + - + +
56A GLU* 1.3 79.7 - - + +
58A LYS* 1.3 62.2 + - + +
60A GLU* 3.3 16.6 + - - +
61A GLY* 2.9 23.6 + - - -
64A ARG* 5.1 1.6 + - - -
136A GLU* 5.1 21.5 - - - +
140A LEU* 4.6 9.5 - - - +
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Residues in contact with LYS 58 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A TYR* 3.6 42.8 - - + +
26A ALA* 3.9 6.5 - - + -
27A SER* 3.8 10.5 - - - +
30A TYR* 3.9 16.8 - - + -
54A LEU* 3.0 19.7 + - - +
57A GLU* 1.3 83.4 + - + +
59A ARG* 1.3 63.9 + - - +
61A GLY 3.2 0.5 + - - -
62A ALA* 3.0 18.9 + - - +
103A GLU* 2.7 41.7 + - - -
106A LEU* 3.1 22.4 - - + +
136A GLU* 4.9 7.2 + - - +
137A GLU* 3.3 14.6 + - - -
140A LEU* 3.7 12.6 - - - +
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Residues in contact with ARG 59 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24A LEU* 4.7 13.0 - - + -
27A SER* 3.7 12.7 + - - +
55A ALA 3.1 16.8 + - - +
56A GLU* 3.3 42.6 - - - +
58A LYS* 1.3 79.1 - - - +
60A GLU* 1.3 73.2 + - - +
62A ALA* 3.3 6.9 + - - +
63A GLU* 3.0 63.8 + - + +
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Residues in contact with GLU 60 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A GLU* 2.9 46.0 + - - +
57A GLU* 3.6 16.6 - - - +
59A ARG* 1.3 89.4 + - - +
61A GLY* 1.3 63.6 + - - +
63A GLU* 3.4 10.3 + - - +
64A ARG* 3.0 52.7 + - - +
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Residues in contact with GLY 61 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A TYR* 4.1 8.1 - - - -
57A GLU 2.9 14.1 + - - -
58A LYS 3.2 4.8 + - - -
60A GLU* 1.3 77.6 - - - +
62A ALA* 1.3 60.2 + - - +
64A ARG* 3.2 11.1 + - - +
65A LEU* 3.1 19.5 + - - +
133A PHE* 3.5 32.9 - - - -
136A GLU* 5.6 2.2 - - - -
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Residues in contact with ALA 62 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20A VAL* 4.0 9.3 - - + +
23A TYR* 3.8 17.9 - - + +
24A LEU* 3.5 35.7 - - + -
58A LYS 3.0 10.9 + - - +
59A ARG 3.3 4.7 + - - +
61A GLY* 1.3 74.6 - - - +
63A GLU* 1.3 59.1 + - + +
65A LEU* 3.3 10.6 + - - +
66A LEU* 2.9 35.3 + - + +
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Residues in contact with GLU 63 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24A LEU* 6.1 1.1 - - + -
59A ARG* 3.0 56.7 + - + +
60A GLU* 3.8 11.1 - - - +
62A ALA* 1.3 79.3 - - + +
64A ARG* 1.3 56.7 + - + +
66A LEU* 3.2 14.8 + - + +
67A LYS* 3.0 28.1 + - - +
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Residues in contact with ARG 64 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57A GLU 5.1 1.4 + - - -
60A GLU* 3.0 52.1 + - - +
61A GLY* 3.2 14.4 + - - +
63A GLU* 1.3 73.4 - - - +
65A LEU* 1.3 65.9 + - - +
67A LYS* 3.3 9.1 + - + +
68A MET* 3.0 23.7 + - - +
128A PHE* 3.6 10.8 - - + -
132A HIS* 3.7 35.2 + - + +
133A PHE* 4.3 9.7 - - + -
136A GLU* 4.5 15.5 + - - -
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Residues in contact with LEU 65 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16A VAL* 4.0 12.0 - - + +
19A LEU* 3.7 49.6 - - + +
20A VAL* 3.5 21.1 - - + +
23A TYR* 4.0 15.7 - - + -
61A GLY 3.1 18.8 + - - +
62A ALA* 3.5 4.3 - - - +
63A GLU 3.3 0.2 - - - -
64A ARG* 1.3 75.7 - - - +
66A LEU* 1.3 57.9 + - - +
68A MET* 3.2 10.7 + - + +
69A GLN* 2.9 29.1 + - - +
113A LEU* 5.3 2.5 - - + -
128A PHE* 3.7 26.2 - - + -
129A LEU* 4.8 4.3 - - + -
133A PHE* 3.8 11.7 - - + -
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Residues in contact with LEU 66 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17A ASN* 5.2 2.7 - - - +
20A VAL* 4.0 20.0 - - + -
24A LEU* 5.8 2.5 - - + -
62A ALA* 2.9 22.6 + - + +
63A GLU* 3.5 18.6 - - + +
64A ARG 3.2 0.2 - - - -
65A LEU* 1.3 74.3 - - - +
67A LYS* 1.3 65.4 + - - +
69A GLN* 3.2 8.0 + - + +
70A ASN* 3.2 24.9 + - - +
76A ALA* 3.7 21.4 - - + +
78A PHE* 3.5 42.4 - - + -
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Residues in contact with LYS 67 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A GLU 3.0 13.2 + - - +
64A ARG* 3.7 11.2 - - + +
65A LEU 3.3 0.2 - - - -
66A LEU* 1.3 76.9 - - - +
68A MET* 1.3 58.5 + - - +
70A ASN* 3.3 8.1 + - - +
71A GLN* 2.9 53.1 + - + +
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Residues in contact with MET 68 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8A TYR* 4.0 10.3 - - - -
16A VAL* 3.8 34.8 - - + -
64A ARG 3.0 17.9 + - - +
65A LEU* 3.6 4.7 - - + +
66A LEU 3.2 0.2 - - - -
67A LYS* 1.3 75.7 - - - +
69A GLN* 1.3 66.9 + - - +
71A GLN* 3.1 19.3 + - - +
72A ARG* 3.0 36.1 + - + +
124A HIS* 4.4 13.7 - - - +
125A LEU* 3.8 19.5 - - + -
128A PHE* 3.5 44.0 - - + -
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Residues in contact with GLN 69 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8A TYR* 2.5 47.0 + - - -
13A GLU* 3.1 24.0 + - - +
16A VAL* 3.6 12.0 - - + +
17A ASN* 3.0 28.9 + - - +
65A LEU 2.9 13.4 + - - +
66A LEU* 3.4 13.9 - - + +
68A MET* 1.3 77.5 - - - +
70A ASN* 1.3 61.5 + - - +
72A ARG* 3.3 1.6 + - - +
73A GLY 3.1 3.1 + - - -
74A GLY* 2.8 40.4 + - - +
75A ARG 3.9 1.5 + - - -
76A ALA* 3.7 25.1 - - + +
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Residues in contact with ASN 70 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A ILE* 3.6 10.4 - - - +
66A LEU 3.2 11.6 + - - +
67A LYS* 3.7 8.8 - - - +
69A GLN* 1.3 78.9 - - - +
71A GLN* 1.3 66.1 + - - +
73A GLY* 3.0 11.6 + - - -
74A GLY 3.6 16.4 + - - -
75A ARG* 3.8 13.3 + - - +
76A ALA* 4.7 13.3 - - - +
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Residues in contact with GLN 71 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A ILE* 3.5 14.2 - - - +
67A LYS* 2.9 43.5 + - + +
68A MET* 3.1 28.8 + - - +
70A ASN* 1.3 76.9 - - + +
72A ARG* 1.3 63.7 + - + +
124A HIS* 4.8 11.5 + - + +
128A PHE* 5.5 4.0 - - - -
----------------------------------------------------------
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Residues in contact with ARG 72 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A ILE* 4.3 4.2 - - - +
5A ARG* 3.5 25.5 - - - +
6A GLN 3.1 20.6 + - - -
7A ASN* 3.0 32.5 + - - +
8A TYR* 3.5 37.8 - - + +
68A MET* 3.0 33.2 + - + +
69A GLN 3.9 0.4 - - - +
70A ASN 3.1 0.2 - - - -
71A GLN* 1.3 82.5 - - + +
73A GLY* 1.3 61.6 + - - +
122A ASP* 2.8 28.7 + - - -
124A HIS* 3.5 40.6 - - + +
125A LEU* 3.8 4.2 - - - +
----------------------------------------------------------
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Residues in contact with GLY 73 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2A SER* 3.7 27.1 + - - -
4A ILE* 3.8 9.2 - - - +
5A ARG* 3.8 18.2 + - - -
69A GLN 3.1 0.2 + - - -
70A ASN 3.0 15.1 + - - -
71A GLN 3.3 0.4 - - - -
72A ARG* 1.3 81.3 - - - +
74A GLY* 1.3 64.3 + - - +
75A ARG* 4.0 12.8 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il