Contacts of the helix formed by residues 91 - 120 (chain A) in PDB entry 1GWG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 91 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A PHE* 4.1 2.9 - - - -
90A GLY* 1.3 76.6 - - - -
92A THR* 1.3 64.9 + - - +
93A LEU* 3.4 9.0 + - - +
94A ASP* 3.0 30.9 + - - +
95A ALA* 2.9 23.9 + - - +
163A GLU* 3.8 11.0 - - - +
1172A IOD 3.8 16.1 - - + +
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Residues in contact with THR 92 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A PHE* 3.8 10.5 - - - -
44A LEU* 3.5 12.3 - - - +
47A VAL* 3.7 27.4 - - + +
51A PHE* 5.6 0.2 - - - -
91A THR* 1.3 71.6 - - - +
93A LEU* 1.3 57.1 + - - +
95A ALA* 3.3 2.6 + - + +
96A MET* 2.9 33.3 + - + +
151A ILE* 3.6 24.5 - - + -
163A GLU* 2.6 43.2 + - - +
166A PHE* 4.5 9.6 - - + -
1172A IOD 4.1 3.4 - - - -
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Residues in contact with LEU 93 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91A THR* 3.1 8.5 - - - +
92A THR* 1.3 77.7 - - - +
94A ASP* 1.3 69.5 + - - +
96A MET* 3.3 1.0 + - - +
97A LYS* 2.9 47.3 + - + +
148A LEU* 3.5 24.2 - - + -
151A ILE* 3.6 30.2 - - + +
152A GLN* 4.0 21.5 - - + -
155A VAL* 4.8 13.7 - - + -
1172A IOD 3.6 7.5 - - + +
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Residues in contact with ASP 94 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A GLN* 6.1 1.1 - - - +
89A TRP 3.4 16.8 - - - +
90A GLY* 3.5 7.0 - - - -
91A THR* 3.0 36.9 + - - +
93A LEU* 1.3 81.3 - - - +
95A ALA* 1.3 63.3 + - - +
97A LYS* 3.4 11.8 + - - +
98A ALA* 3.0 23.4 + - - +
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Residues in contact with ALA 95 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A LEU* 3.4 31.1 - - + +
37A PHE* 3.5 29.6 - - + -
51A PHE* 3.9 9.0 - - + -
89A TRP* 4.0 7.4 - - - +
91A THR 2.9 8.2 + - - +
92A THR 3.7 2.7 - - - +
94A ASP* 1.3 80.6 - - - +
96A MET* 1.3 57.7 + - - +
98A ALA* 3.3 6.1 + - - +
99A ALA* 2.9 27.5 + - - +
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Residues in contact with MET 96 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A VAL* 6.0 0.9 - - + -
50A PHE* 3.7 37.9 - - + -
51A PHE* 4.4 6.9 - - + -
92A THR* 2.9 21.2 + - + +
93A LEU 3.9 0.4 - - - +
95A ALA* 1.3 73.3 - - - +
97A LYS* 1.3 65.1 + - - +
99A ALA* 3.3 5.8 + - - +
100A ILE* 3.1 23.0 + - - +
144A MET* 4.0 26.9 - - + +
147A HIS* 4.0 24.2 - - + -
148A LEU* 3.8 31.4 - - + +
151A ILE* 4.2 14.6 - - + -
166A PHE* 5.0 4.3 - - + -
171A LEU* 5.4 3.8 - - + -
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Residues in contact with LYS 97 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93A LEU* 2.9 46.6 + - + +
94A ASP* 3.6 11.9 - - - +
96A MET* 1.3 78.1 - - - +
98A ALA* 1.3 62.2 + - - +
100A ILE* 3.0 27.2 - - + +
101A VAL* 3.0 13.5 + - + +
148A LEU* 3.7 15.5 - - + -
152A GLN* 4.4 14.7 - - - +
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Residues in contact with ALA 98 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A LEU* 5.6 2.7 - - + -
85A SER* 6.0 0.4 - - - +
86A GLN* 4.7 7.4 - - - +
89A TRP* 4.3 27.6 - - + -
94A ASP 3.0 16.5 + - - +
95A ALA 3.7 5.4 - - - +
97A LYS* 1.3 76.7 - - - +
99A ALA* 1.3 57.9 + - - +
101A VAL* 3.4 9.3 + - - +
102A LEU* 3.0 27.9 + - - +
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Residues in contact with ALA 99 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A TYR* 3.5 11.8 + - + +
33A LEU* 5.0 2.4 - - + +
51A PHE* 3.8 24.0 - - + -
95A ALA 2.9 16.6 + - - +
96A MET* 3.6 9.0 - - - +
97A LYS 3.2 0.2 - - - -
98A ALA* 1.3 77.7 - - - +
100A ILE* 1.3 56.7 + - - +
102A LEU* 3.2 6.7 + - - +
103A GLU* 2.9 32.4 + - - +
144A MET* 3.9 19.5 - - + -
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Residues in contact with ILE 100 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A MET 3.1 11.3 + - - +
97A LYS* 3.0 21.8 - - + +
99A ALA* 1.3 74.4 - - - +
101A VAL* 1.3 74.5 + - + +
103A GLU* 3.4 1.8 + - - +
104A LYS* 2.9 40.2 + - + +
141A ILE* 4.0 21.3 - - + +
144A MET* 3.6 33.6 - - + -
145A GLY* 3.6 17.0 - - - +
148A LEU* 3.9 20.9 - - + -
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Residues in contact with VAL 101 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A LYS* 3.0 15.8 + - + +
98A ALA* 3.6 12.3 - - - +
100A ILE* 1.3 89.5 - - + +
102A LEU* 1.3 62.8 + - - +
104A LYS* 3.4 9.3 + - + +
105A SER* 3.2 22.3 + - - -
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Residues in contact with LEU 102 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A LEU 5.6 0.7 - - - +
26A ALA* 4.1 24.2 - - + +
29A THR* 3.7 33.7 - - + +
30A TYR* 3.6 33.9 - - + +
33A LEU* 5.8 0.2 - - + -
98A ALA 3.0 14.1 + - - +
99A ALA* 3.2 9.6 + - - +
101A VAL* 1.3 78.9 - - - +
103A GLU* 1.3 63.6 + - - +
105A SER* 2.7 32.5 + - - +
106A LEU* 3.1 11.6 + - + +
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Residues in contact with GLU 103 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A TYR* 2.6 24.2 + - - +
58A LYS* 2.7 41.5 + - - -
99A ALA 2.9 19.0 + - - +
100A ILE 4.0 3.1 - - - +
102A LEU* 1.3 76.4 - - - +
104A LYS* 1.3 57.6 + - - +
106A LEU* 3.2 6.6 + - - +
107A ASN* 2.8 26.5 + - - +
137A GLU* 2.4 40.1 - - - +
140A LEU* 3.5 12.4 - - + +
141A ILE* 3.8 15.9 - - + -
144A MET* 3.6 18.4 - - + -
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Residues in contact with LYS 104 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100A ILE* 2.9 36.5 + - + +
101A VAL* 3.7 7.9 - - + +
103A GLU* 1.3 75.8 - - - +
105A SER* 1.3 58.0 + - - +
107A ASN* 3.3 7.4 + - - +
108A GLN* 2.8 31.4 + - - +
141A ILE* 4.3 20.9 - - + -
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Residues in contact with SER 105 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A LEU* 5.1 3.3 - - - +
101A VAL* 3.2 13.0 + - - -
102A LEU* 2.7 30.9 + - - +
104A LYS* 1.3 74.1 - - - +
106A LEU* 1.3 68.1 + - - +
108A GLN* 3.4 6.4 + - - +
109A ALA* 3.0 22.5 + - - +
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Residues in contact with LEU 106 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19A LEU* 4.8 0.9 - - + +
22A LEU* 3.7 43.1 - - + +
23A TYR* 4.0 26.0 - - + +
26A ALA* 3.8 14.1 - - + -
58A LYS* 3.1 44.0 - - + +
102A LEU* 3.1 14.3 + - + +
103A GLU* 3.2 13.4 + - - +
105A SER* 1.3 84.6 + - - +
107A ASN* 1.3 57.7 + - - +
109A ALA* 3.1 6.9 + - - +
110A LEU* 2.8 34.1 + - - +
137A GLU* 4.5 4.0 - - - +
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Residues in contact with ASN 107 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A GLU 2.8 16.8 + - - +
104A LYS* 3.6 6.1 - - - +
105A SER 3.3 0.2 - - - -
106A LEU* 1.3 76.5 - - - +
108A GLN* 1.3 55.5 + - - +
110A LEU* 3.0 12.9 + - - +
111A LEU* 2.8 52.2 + - - +
134A LEU* 4.6 8.7 + - - +
137A GLU* 3.4 31.3 - - + +
138A VAL* 5.0 10.2 - - - +
141A ILE* 3.9 15.0 - - + +
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Residues in contact with GLN 108 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104A LYS 2.8 17.3 + - - +
105A SER* 3.8 7.4 - - - +
107A ASN* 1.3 76.3 - - - +
109A ALA* 1.3 57.8 + - - +
111A LEU* 3.2 23.0 + - - +
112A ASP* 2.9 65.7 + - - +
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Residues in contact with ALA 109 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18A ARG* 4.1 12.3 - - - +
19A LEU* 3.7 12.8 - - + +
22A LEU* 3.6 28.7 - - + -
105A SER 3.0 14.3 + - - +
106A LEU 3.1 8.5 + - - +
108A GLN* 1.3 77.1 - - - +
110A LEU* 1.3 62.9 + - - +
112A ASP* 3.5 9.2 + - - +
113A LEU* 3.0 24.3 + - - +
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Residues in contact with LEU 110 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19A LEU* 3.7 25.1 - - + -
23A TYR* 3.3 28.0 - - + +
106A LEU 2.8 19.3 + - - +
107A ASN* 3.0 9.2 + - - +
109A ALA* 1.3 78.7 - - - +
111A LEU* 1.3 56.9 + - - +
113A LEU* 3.3 6.0 + - - +
114A HIS* 2.9 28.4 + - - +
129A LEU* 4.1 12.2 - - + +
133A PHE* 3.8 32.1 - - + +
134A LEU* 4.0 14.4 - - + +
137A GLU* 3.9 28.7 - - + -
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Residues in contact with LEU 111 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A ASN* 2.8 36.5 + - - +
108A GLN* 3.2 28.0 + - - +
110A LEU* 1.3 74.5 - - - +
112A ASP* 1.3 60.9 + - - +
114A HIS* 3.3 8.1 + - + +
115A ALA* 2.9 28.6 + - - +
134A LEU* 4.7 20.6 - - + -
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Residues in contact with ASP 112 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18A ARG* 5.8 1.6 + - - -
108A GLN* 2.9 48.6 + - - +
109A ALA* 3.7 7.8 - - - +
111A LEU* 1.3 77.9 - - - +
113A LEU* 1.3 59.0 + - - +
115A ALA* 3.2 7.9 + - - +
116A LEU* 2.9 27.8 + - - +
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Residues in contact with LEU 113 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12A VAL* 4.3 9.2 - - + +
15A ALA* 3.8 28.3 - - + +
16A VAL* 4.4 15.9 - - + -
19A LEU* 4.0 25.8 - - + -
65A LEU* 5.3 1.6 - - + -
109A ALA 3.0 17.4 + - - +
110A LEU* 3.7 5.2 - - - +
112A ASP* 1.3 74.9 - - - +
114A HIS* 1.3 59.7 + - - +
116A LEU* 3.3 13.5 + - + -
117A GLY 2.9 22.9 + - - -
125A LEU* 3.5 24.1 - - + +
129A LEU* 3.7 24.2 - - + -
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Residues in contact with HIS 114 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110A LEU 2.9 16.6 + - - +
111A LEU* 3.6 10.3 - - + +
113A LEU* 1.3 77.1 - - - +
115A ALA* 1.3 60.0 + - - +
117A GLY* 3.3 2.0 + - - -
118A SER* 3.0 42.0 + - - -
126A CYS* 3.4 35.7 - - + +
129A LEU* 3.7 13.2 - - + +
130A GLU* 2.7 35.5 + - + -
134A LEU* 4.1 16.5 - - + +
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Residues in contact with ALA 115 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111A LEU 2.9 16.8 + - - +
112A ASP* 3.6 9.0 - - - +
114A HIS* 1.3 75.4 + - - +
116A LEU* 1.3 59.4 + - - +
118A SER* 3.8 7.2 - - - -
119A ALA* 2.9 30.2 + - - +
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Residues in contact with LEU 116 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11A GLU* 3.7 33.7 - - + +
12A VAL* 3.8 15.7 - - + -
15A ALA* 3.9 15.5 - - + -
112A ASP 2.9 13.5 + - - +
113A LEU* 3.5 10.5 - - + +
114A HIS 3.3 0.2 - - - -
115A ALA* 1.3 75.3 - - - +
117A GLY* 1.3 59.0 + - - +
119A ALA* 3.1 10.3 + - + +
120A GLN* 2.8 56.4 + - - +
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Residues in contact with GLY 117 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12A VAL* 4.4 3.8 - - - -
113A LEU 2.9 10.1 + - - -
114A HIS 3.3 4.4 + - - -
116A LEU* 1.3 76.9 - - - +
118A SER* 1.3 58.6 + - - +
120A GLN 3.2 1.6 + - - -
121A ALA 3.1 4.7 + - - -
122A ASP* 2.8 35.1 + - - -
125A LEU* 3.7 23.3 - - - +
126A CYS* 3.9 9.2 - - - -
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Residues in contact with SER 118 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114A HIS* 3.0 35.4 + - - -
115A ALA* 3.8 8.4 - - - -
117A GLY* 1.3 71.8 - - - +
119A ALA* 1.3 68.2 + - - +
121A ALA* 3.0 13.3 + - - +
126A CYS* 3.7 7.8 - - - -
1173A IOD 4.2 7.2 - - - -
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Residues in contact with ALA 119 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115A ALA 2.9 18.2 + - - +
116A LEU* 3.4 12.6 - - + +
118A SER* 1.3 79.0 - - - +
120A GLN* 1.3 60.4 + - - +
121A ALA* 3.4 1.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 120 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7A ASN* 4.2 9.5 + - - +
9A SER* 3.0 35.1 + - - +
11A GLU* 3.3 23.8 - - - +
12A VAL* 3.6 2.8 - - - +
116A LEU* 2.8 45.4 + - - +
117A GLY* 3.9 5.4 - - - +
118A SER 3.1 0.4 - - - -
119A ALA* 1.3 76.1 - - - +
121A ALA* 1.3 72.0 + - - +
122A ASP* 3.4 8.0 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il