Contacts of the helix formed by residues 199 - 229 (chain B) in PDB entry 1HE1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 199 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197B ASP 3.7 2.0 + - - -
198B ALA* 1.3 76.8 - - - +
200B PRO* 1.3 73.4 - - - +
201B GLU* 3.3 17.5 + - - +
202B LEU* 3.1 22.3 + - - +
203B ARG* 3.0 21.4 + - - +
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Residues in contact with PRO 200 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128B PRO* 5.0 2.5 - - + +
199B SER* 1.3 89.0 - - - +
201B GLU* 1.3 77.0 + - - +
203B ARG* 3.3 24.9 + - + +
204B ARG* 3.0 24.0 + - - +
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Residues in contact with GLU 201 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
199B SER* 3.3 21.9 + - - +
200B PRO* 1.3 94.4 - - - +
202B LEU* 1.3 61.0 + - - +
204B ARG* 3.3 8.1 + - - +
205B GLU* 3.1 28.1 + - - +
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Residues in contact with LEU 202 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177B GLY* 4.4 21.5 - - - +
194B LEU* 4.0 20.2 - - + -
198B ALA* 3.9 18.8 - - + -
199B SER* 3.1 21.5 + - - +
201B GLU* 1.3 77.1 - - - +
203B ARG* 1.3 60.9 + - - +
205B GLU* 3.3 25.0 + - + +
206B ILE* 2.9 34.5 + - + +
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Residues in contact with ARG 203 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128B PRO* 3.8 23.2 + - + +
129B GLU* 5.9 0.4 - - - +
131B LEU* 4.3 10.3 - - + +
132B ALA* 3.5 32.3 - - - +
195B VAL* 3.1 26.8 + - - +
196B LEU 4.4 3.4 + - - -
198B ALA* 2.4 39.8 + - + +
199B SER 3.0 10.0 + - - +
200B PRO* 3.6 33.7 - - - +
202B LEU* 1.3 73.8 - - - +
204B ARG* 1.3 61.5 + - - +
206B ILE* 3.3 10.1 + - + +
207B THR* 2.9 33.6 + - - -
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Residues in contact with ARG 204 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126B LEU 4.6 0.6 + - - -
127B THR* 5.3 0.4 - - - +
128B PRO* 3.5 36.2 - - + +
200B PRO 3.0 13.1 + - - +
201B GLU* 3.5 12.1 - - - +
202B LEU 3.2 0.2 - - - -
203B ARG* 1.3 78.2 - - - +
205B GLU* 1.3 56.3 + - + +
207B THR* 3.2 25.1 + - - +
208B ASP* 2.9 61.6 + - - +
211B HIS* 3.6 12.7 + - - -
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Residues in contact with GLU 205 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201B GLU* 3.1 15.7 + - - +
202B LEU* 3.4 36.1 + - + +
204B ARG* 1.3 74.5 - - + +
206B ILE* 1.3 65.1 + - - +
208B ASP* 3.1 9.6 + - - +
209B GLN* 2.9 33.2 + - - +
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Residues in contact with ILE 206 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131B LEU* 3.5 23.8 - - + -
176B ILE* 3.6 15.7 - - + -
177B GLY* 3.9 20.6 - - - +
184B TRP* 3.6 31.2 - - + -
194B LEU* 4.1 17.3 - - + -
195B VAL* 5.9 0.7 - - + -
198B ALA* 4.9 3.8 - - + -
202B LEU* 2.9 32.5 + - + +
203B ARG* 3.5 8.5 - - + +
205B GLU* 1.3 76.8 - - - +
207B THR* 1.3 59.6 + - - +
209B GLN* 3.1 12.5 + - - +
210B LEU* 2.9 35.4 + - + +
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Residues in contact with THR 207 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126B LEU* 3.1 36.0 - - + +
127B THR 3.9 1.2 + - - -
128B PRO* 3.4 22.6 - - - +
131B LEU* 3.9 10.7 - - - +
203B ARG 2.9 20.1 + - - -
204B ARG* 3.2 25.1 - - - +
205B GLU 3.2 0.2 - - - -
206B ILE* 1.3 79.2 - - - +
208B ASP* 1.3 61.0 + - - +
210B LEU* 3.4 9.5 + - - +
211B HIS* 3.1 27.9 + - + +
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Residues in contact with ASP 208 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204B ARG* 2.9 53.3 + - - +
205B GLU* 3.6 9.0 - - - +
207B THR* 1.3 75.9 - - - +
209B GLN* 1.3 59.0 + - + +
211B HIS* 3.2 12.6 + - - +
212B GLN* 3.0 27.4 + - - +
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Residues in contact with GLN 209 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174B ARG* 5.2 4.1 + - - +
175B SER 2.8 27.8 + - - -
176B ILE* 3.7 14.7 - - + +
177B GLY* 3.3 22.3 + - - +
205B GLU* 2.9 22.8 + - - +
206B ILE* 3.3 12.9 + - - +
208B ASP* 1.3 78.3 - - + +
210B LEU* 1.3 56.8 + - - +
212B GLN* 3.3 9.0 + - - +
213B VAL* 2.9 30.0 + - - +
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Residues in contact with LEU 210 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123B LEU* 4.6 17.7 - - + +
126B LEU* 3.8 27.4 - - + -
131B LEU* 4.8 5.8 - - + -
145B LEU* 4.3 22.7 - - + -
176B ILE* 4.2 17.9 - - + -
181B LEU* 3.8 28.5 - - + -
184B TRP* 5.4 4.5 - - + -
206B ILE* 2.9 31.3 + - + +
207B THR* 3.8 7.2 - - - +
208B ASP 3.3 0.2 - - - -
209B GLN* 1.3 74.1 - - - +
211B HIS* 1.3 67.8 + - + +
213B VAL* 3.1 8.0 + - + +
214B MET* 3.0 28.3 + - - +
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Residues in contact with HIS 211 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123B LEU 3.1 21.8 - - - -
124B ALA* 3.3 17.8 + - - +
125B THR* 4.6 2.2 - - - -
126B LEU* 2.8 36.4 + - + -
204B ARG* 3.6 14.3 + - - -
207B THR* 3.1 29.6 + - + +
208B ASP* 3.5 12.5 + - - +
210B LEU* 1.3 77.1 - - + +
212B GLN* 1.3 62.5 + - - +
214B MET* 3.4 13.5 + - - +
215B SER* 3.4 15.0 + - - -
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Residues in contact with GLN 212 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174B ARG* 4.4 7.6 - - - +
208B ASP 3.0 13.6 + - - +
209B GLN* 3.4 13.0 - - - +
211B HIS* 1.3 75.6 - - - +
213B VAL* 1.3 66.1 + - - +
215B SER* 3.1 24.1 + - - -
216B GLU* 2.8 36.6 + - - +
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Residues in contact with VAL 213 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148B LEU* 4.2 10.3 - - + -
171B LEU* 4.7 8.6 - - + +
174B ARG* 4.0 27.8 - - + +
176B ILE* 4.2 18.4 - - + -
181B LEU* 4.1 28.0 - - + -
209B GLN 2.9 17.6 + - - +
210B LEU* 3.1 13.2 + - + +
212B GLN* 1.3 76.8 - - - +
214B MET* 1.3 59.7 + - - +
216B GLU* 3.0 8.9 + - - +
217B VAL* 2.8 40.4 + - + +
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Residues in contact with MET 214 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117B LEU 4.8 2.9 - - - +
120B ALA* 3.3 31.2 - - + +
121B SER* 4.3 7.0 - - - -
123B LEU* 3.6 35.7 - - + -
124B ALA* 3.8 23.1 - - + +
148B LEU* 4.3 8.5 - - - -
210B LEU 3.0 17.2 + - - +
211B HIS 3.7 7.6 - - - +
212B GLN 3.3 0.4 - - - -
213B VAL* 1.3 77.0 - - - +
215B SER* 1.3 61.3 + - - +
217B VAL* 3.5 30.0 - - + +
218B ALA* 3.0 21.8 + - - +
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Residues in contact with SER 215 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211B HIS 3.4 11.4 + - - -
212B GLN* 3.1 23.8 + - - -
214B MET* 1.3 75.7 - - - +
216B GLU* 1.3 64.0 + - - +
218B ALA* 3.3 19.3 + - - +
219B LEU* 3.6 12.4 + - - +
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Residues in contact with GLU 216 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167B GLN* 4.6 3.4 - - - +
170B ARG* 4.7 10.7 + - - -
171B LEU* 3.7 17.3 - - + +
174B ARG* 2.7 42.3 + - - -
212B GLN* 2.8 32.6 + - - +
213B VAL* 3.0 6.6 + - - +
215B SER* 1.3 74.7 - - - +
217B VAL* 1.3 66.0 + - - +
219B LEU* 3.1 18.5 + - + +
220B LEU* 3.1 20.1 + - - +
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Residues in contact with VAL 217 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117B LEU* 3.9 35.2 - - + +
148B LEU* 4.0 15.9 - - + -
152B LEU* 4.9 2.9 - - + -
171B LEU* 4.2 14.1 - - + -
213B VAL* 2.8 36.0 + - + +
214B MET* 3.5 26.9 - - + +
216B GLU* 1.3 77.4 - - - +
218B ALA* 1.3 53.3 + - - +
220B LEU* 3.0 8.6 + - + +
221B ARG* 2.7 34.2 + - + +
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Residues in contact with ALA 218 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214B MET 3.0 12.2 + - - +
215B SER* 3.3 14.1 - - - +
216B GLU 3.2 0.2 - - - -
217B VAL* 1.3 78.1 - - - +
219B LEU* 1.3 64.4 + - + +
221B ARG* 3.4 9.2 + - - +
222B GLN* 3.2 30.8 + - - +
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Residues in contact with LEU 219 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167B GLN* 4.7 7.6 - - - +
215B SER 3.8 15.0 - - - +
216B GLU* 3.1 18.0 + - + +
218B ALA* 1.3 74.8 - - + +
220B LEU* 1.3 66.1 + - - +
222B GLN* 3.3 24.5 + - - +
223B ALA* 3.3 19.6 + - - +
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Residues in contact with LEU 220 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117B LEU* 5.4 1.8 - - + -
152B LEU* 3.7 29.4 - - + -
155B ILE* 4.2 9.6 - - + -
164B SER* 3.8 39.9 - - - +
167B GLN* 3.9 20.3 + - + +
168B ALA* 3.9 22.4 - - + +
171B LEU* 4.2 8.3 - - + -
216B GLU 3.1 10.4 + - - +
217B VAL* 3.0 10.8 + - + +
219B LEU* 1.3 73.6 - - - +
221B ARG* 1.3 67.6 + - - +
223B ALA* 3.1 6.5 + - + +
224B VAL* 3.0 31.5 + - + +
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Residues in contact with ARG 221 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B LEU* 3.3 38.4 + - + +
115B LYS* 4.4 8.3 - - - +
117B LEU* 4.0 23.7 - - + +
118B ASP* 2.6 45.4 + - - -
217B VAL* 2.7 21.3 + - + +
218B ALA* 3.6 9.6 - - - +
219B LEU 3.3 0.2 - - - -
220B LEU* 1.3 73.3 - - - +
222B GLN* 1.3 57.4 + - + +
224B VAL* 3.4 1.7 + - - +
225B GLU* 2.3 80.9 + - + +
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Residues in contact with GLN 222 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218B ALA* 3.2 17.4 + - - +
219B LEU* 3.5 26.2 + - - +
220B LEU 3.2 0.8 - - - -
221B ARG* 1.3 77.2 - - + +
223B ALA* 1.3 62.1 + - - +
225B GLU* 3.4 17.3 + - - +
226B SER* 3.0 23.2 + - - -
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Residues in contact with ALA 223 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161B VAL* 5.8 2.0 - - + +
164B SER* 3.9 18.8 + - - +
167B GLN* 5.9 2.9 - - - +
219B LEU 3.3 8.5 + - - +
220B LEU* 3.1 12.7 + - + +
222B GLN* 1.3 79.4 - - - +
224B VAL* 1.3 58.2 + - - +
226B SER* 3.2 9.2 - - - -
227B GLU* 2.9 25.6 + - - +
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Residues in contact with VAL 224 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110B LEU* 3.7 34.1 - - + +
113B THR* 4.5 2.5 - - - +
114B LEU* 3.6 27.6 - - + -
155B ILE* 4.0 34.3 - - + -
164B SER* 4.4 7.0 - - - +
220B LEU* 3.0 22.9 + - + +
221B ARG* 5.0 0.2 - - - -
223B ALA* 1.3 72.3 - - - +
225B GLU* 1.3 61.2 + - - +
226B SER 3.0 1.1 - - - -
227B GLU* 3.0 9.3 + - - +
228B VAL* 2.8 31.0 + - + +
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Residues in contact with GLU 225 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B LEU* 4.1 16.6 - - + -
221B ARG* 2.3 68.3 + - - +
222B GLN* 3.6 21.0 + - - +
224B VAL* 1.3 72.4 - - - +
226B SER* 1.3 59.5 + - - +
228B VAL* 3.6 3.2 + - - +
229B SER* 3.1 27.1 + - - -
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Residues in contact with SER 226 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
222B GLN 3.0 14.2 + - - -
223B ALA* 3.2 12.6 - - - -
224B VAL 3.0 0.2 - - - -
225B GLU* 1.3 76.4 - - - +
227B GLU* 1.3 65.7 + - - +
229B SER* 3.2 24.5 + - - -
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Residues in contact with GLU 227 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110B LEU* 3.3 24.6 - - + +
158B GLY 4.6 0.2 - - - +
159B SER* 2.7 24.0 + - - -
160B GLN* 2.7 34.8 + - - +
161B VAL* 3.5 21.6 - - + +
164B SER* 4.6 3.1 + - - -
223B ALA 2.9 13.1 + - - +
224B VAL* 3.0 10.6 + - - +
226B SER* 1.3 76.2 + - - +
228B VAL* 1.3 63.9 + - - +
229B SER 3.3 6.1 + - - +
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Residues in contact with VAL 228 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110B LEU* 4.1 18.6 - - + -
111B PRO* 4.0 44.4 - - + -
114B LEU* 4.2 8.1 - - + -
224B VAL* 2.8 25.9 + - + +
225B GLU* 3.9 7.6 - - - +
226B SER 3.3 0.2 - - - -
227B GLU* 1.3 73.8 - - - +
229B SER* 1.3 61.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 229 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225B GLU 3.1 17.1 + - - -
226B SER* 3.2 17.0 + - - +
227B GLU 3.2 5.8 - - - +
228B VAL* 1.3 82.8 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il