Contacts of the helix formed by residues 276 - 298 (chain Q) in PDB entry 1HI0
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 276 (chain Q).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151Q THR 4.0 1.3 - - - +
153Q ILE* 3.3 27.4 - - + +
190Q TYR* 5.7 0.2 - - + -
194Q GLN 4.3 9.9 - - - +
196Q GLY 3.3 27.1 - - - +
198Q ALA 3.4 20.4 - - - +
199Q TYR* 4.6 3.8 - - + -
275Q GLY* 1.3 80.4 - - - +
277Q PHE* 1.3 65.9 + - - +
278Q ALA 3.4 1.3 - - - -
279Q LEU* 3.1 23.2 + - + -
280Q ASN* 3.1 13.1 + - - +
363Q LEU* 4.0 15.0 - - + -
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Residues in contact with PHE 277 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6E C 5.1 10.5 - - - -
143Q LEU* 5.5 1.8 - - + -
145Q ILE* 4.0 31.0 - - + -
150Q SER 5.6 0.9 - - - -
151Q THR* 3.2 44.6 + - + +
153Q ILE 4.0 2.0 + - - -
163Q LYS* 3.8 26.9 - - + -
166Q ILE* 3.3 24.5 - - + -
167Q ALA* 4.0 14.1 - - + -
275Q GLY 3.2 3.4 + - - +
276Q PRO* 1.3 69.1 - - - +
278Q ALA* 1.3 66.6 + - - +
279Q LEU 2.9 0.2 + - - -
280Q ASN* 3.1 6.0 + - + +
281Q ALA* 2.9 30.7 + - + +
284Q MET* 4.0 29.8 - - + -
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Residues in contact with ALA 278 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153Q ILE 5.4 0.6 + - - -
154Q PRO* 6.1 0.2 - - + -
166Q ILE* 4.4 14.2 - - + +
170Q ALA* 3.3 19.7 - - + +
193Q HIS 3.2 27.1 - - - +
194Q GLN* 3.2 23.8 + - + +
195Q MET* 3.4 11.7 - - + +
276Q PRO 3.4 0.6 + - - -
277Q PHE* 1.3 76.9 - - - +
279Q LEU* 1.3 57.2 + - - +
282Q PRO* 3.0 20.4 - - - +
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Residues in contact with LEU 279 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181Q MET* 4.5 4.0 - - + -
194Q GLN 4.4 0.2 + - - -
195Q MET* 4.0 17.5 - - + +
196Q GLY* 4.1 16.2 - - - +
199Q TYR* 5.7 0.7 - - - +
276Q PRO* 3.1 26.1 + - + +
277Q PHE 3.0 0.2 - - - -
278Q ALA* 1.3 77.1 - - - +
280Q ASN* 1.3 67.2 + - - +
281Q ALA 3.2 1.8 - - - -
282Q PRO* 3.0 18.3 - - + +
283Q ILE* 3.6 9.5 - - + +
356Q LEU* 4.0 43.7 - - + +
359Q THR* 5.0 2.9 - - + -
360Q SER* 4.0 29.8 - - - +
363Q LEU* 4.4 13.7 - - + -
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Residues in contact with ASN 280 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6E C 6.2 0.9 - - - -
199Q TYR* 4.2 5.5 + - - -
275Q GLY* 3.2 36.9 - - - +
276Q PRO* 3.1 5.0 + - - +
277Q PHE* 3.1 10.1 + - + +
279Q LEU* 1.3 79.3 - - - +
281Q ALA* 1.3 51.9 + - - +
283Q ILE* 3.1 11.8 + - - +
284Q MET* 2.6 55.1 + - - +
360Q SER* 4.9 2.0 - - - -
394Q GLY 3.4 12.6 - - - +
395Q GLN* 3.4 14.5 - - - +
396Q GLY 3.1 23.7 - - - +
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Residues in contact with ALA 281 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143Q LEU* 4.1 15.3 - - + +
167Q ALA* 4.2 18.4 - - + +
170Q ALA* 3.9 15.7 - - + -
171Q LEU* 4.3 3.6 - - + -
277Q PHE* 2.9 21.4 + - + +
280Q ASN* 1.3 76.0 - - - +
282Q PRO* 1.3 72.4 - - + +
284Q MET* 3.0 12.6 + - - +
285Q ALA* 2.9 23.2 + - - +
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Residues in contact with PRO 282 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170Q ALA* 4.1 5.8 - - + -
171Q LEU* 3.7 7.8 - - + -
174Q ALA* 3.8 21.3 - - + -
195Q MET* 4.6 2.5 - - + -
278Q ALA 3.0 21.5 - - - +
279Q LEU* 3.0 17.5 - - + +
281Q ALA* 1.3 93.2 - - + +
283Q ILE* 1.3 58.5 + - + +
285Q ALA* 3.6 4.3 - - - +
286Q VAL* 3.6 2.8 - - - +
353Q TRP* 3.1 19.6 + - - +
356Q LEU* 4.4 15.5 - - + -
657Q PHE* 3.5 33.4 - - + -
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Residues in contact with ILE 283 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279Q LEU* 3.6 22.2 - - + +
280Q ASN* 3.1 15.7 + - - +
281Q ALA 3.0 0.4 - - - -
282Q PRO* 1.3 77.1 - - + +
284Q MET* 1.3 66.9 + - - +
285Q ALA 3.1 1.6 - - - -
286Q VAL* 3.0 5.5 + - - +
287Q ALA* 2.9 19.6 + - + +
353Q TRP* 4.2 10.7 - - + +
356Q LEU* 4.4 3.6 - - + +
357Q PHE* 4.1 37.2 - - + +
360Q SER* 3.4 35.4 - - - +
395Q GLN* 4.1 5.6 - - - +
396Q GLY* 3.8 24.9 - - - -
397Q ALA* 4.2 3.1 - - + +
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Residues in contact with MET 284 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6E C 4.7 28.7 - - - +
143Q LEU* 3.6 30.7 - - + +
144Q LYS 3.8 10.8 - - - +
145Q ILE* 5.2 3.4 - - + -
277Q PHE* 4.0 23.8 - - + -
280Q ASN* 2.6 36.0 + - - +
281Q ALA* 3.0 4.9 + - - +
283Q ILE* 1.3 72.3 - - - +
285Q ALA* 1.3 62.7 + - - +
286Q VAL 3.0 1.4 + - - -
287Q ALA* 3.9 7.9 - - - -
288Q GLN* 3.1 27.0 + - - +
291Q ARG* 5.1 0.4 + - - +
396Q GLY* 3.9 20.2 - - - +
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Residues in contact with ALA 285 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141Q VAL* 5.3 3.8 + - - +
143Q LEU* 4.4 15.4 - - + +
171Q LEU* 4.1 11.0 - - + -
281Q ALA 2.9 14.2 + - - +
282Q PRO 3.6 0.4 - - - +
284Q MET* 1.3 76.9 - - - +
286Q VAL* 1.3 58.2 + - - +
288Q GLN* 5.6 0.4 - - - -
289Q PRO* 3.2 20.1 - - - +
654Q THR* 5.2 8.2 - - - -
657Q PHE* 3.5 34.3 - - + -
658Q LEU* 3.4 9.9 - - + +
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Residues in contact with VAL 286 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135Q PHE* 4.5 10.3 - - + -
138Q LEU* 4.4 11.7 - - + -
282Q PRO 3.6 4.0 - - - +
283Q ILE 3.0 1.9 + - - +
285Q ALA* 1.3 77.4 - - - +
287Q ALA* 1.3 67.7 + - - +
288Q GLN 3.3 2.0 - - - -
289Q PRO* 3.0 13.6 - - - +
290Q VAL* 3.1 25.3 + - + +
349Q TYR* 4.5 7.4 - - + -
353Q TRP* 3.3 52.9 - - + +
657Q PHE* 4.4 3.1 - - + -
658Q LEU* 3.9 17.7 - - + -
661Q VAL* 4.2 9.9 - - + -
662Q MET* 5.8 0.2 - - + -
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Residues in contact with ALA 287 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135Q PHE* 6.2 0.7 - - - -
283Q ILE* 2.9 16.7 + - + +
284Q MET* 3.7 5.8 - - - +
286Q VAL* 1.3 77.6 - - - +
288Q GLN* 1.3 57.8 + - - +
290Q VAL* 3.0 8.0 + - - +
291Q ARG* 2.8 42.9 + - - +
396Q GLY 3.6 23.1 - - - +
397Q ALA* 4.1 13.5 - - + -
400Q LEU* 3.6 8.9 - - + +
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Residues in contact with GLN 288 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141Q VAL* 3.8 19.3 - - + -
142Q PRO 5.1 5.8 - - - +
143Q LEU* 6.4 1.1 - - - -
144Q LYS* 6.4 1.8 - - + +
284Q MET 3.1 10.4 + - - +
285Q ALA 5.3 0.2 - - - -
287Q ALA* 1.3 78.7 - - - +
289Q PRO* 1.3 71.9 - - + +
291Q ARG* 2.9 45.7 + - - +
292Q ASN* 2.9 40.1 + - - +
633Q THR* 5.0 7.5 + - - -
634Q GLU* 5.3 14.2 + - - +
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Residues in contact with PRO 289 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138Q LEU* 3.6 30.2 - - + +
139Q GLU 3.7 18.4 + - - +
141Q VAL* 3.7 17.7 - - + +
285Q ALA 3.2 23.8 - - - +
286Q VAL* 3.0 18.6 - - - +
288Q GLN* 1.3 90.7 - - + +
290Q VAL* 1.3 61.4 + - - +
292Q ASN* 3.3 11.5 + - + +
293Q LYS* 3.1 18.4 + - - +
658Q LEU* 4.3 10.1 - - + -
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Residues in contact with VAL 290 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134Q MET* 3.7 30.7 - - + +
135Q PHE* 3.8 30.3 - - + -
138Q LEU* 3.8 24.7 - - + -
286Q VAL 3.1 18.2 + - - +
287Q ALA* 3.0 9.9 + - - +
289Q PRO* 1.3 76.2 - - - +
291Q ARG* 1.3 64.3 + - - +
293Q LYS* 3.1 4.2 + - - +
294Q ILE* 3.1 23.8 + - + +
400Q LEU* 3.7 26.2 - - + -
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Residues in contact with ARG 291 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6E C 4.4 10.1 + - - -
284Q MET 5.1 0.2 + - - -
287Q ALA* 2.8 18.0 + - - +
288Q GLN* 2.9 57.2 + - - +
290Q VAL* 1.3 76.5 - - - +
292Q ASN* 1.3 63.4 + - - +
294Q ILE* 3.5 6.9 + - - +
295Q TYR* 2.9 55.0 + - + +
396Q GLY 3.3 23.2 + - - -
397Q ALA* 4.3 0.6 - - - +
399Q ASP* 2.7 38.6 + - - -
400Q LEU* 4.2 13.2 - - + -
633Q THR* 5.3 2.0 - - - -
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Residues in contact with ASN 292 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139Q GLU 4.9 1.4 + - - +
141Q VAL* 3.7 27.7 - - - +
288Q GLN* 2.9 42.2 + - - +
289Q PRO* 3.6 12.8 - - + +
291Q ARG* 1.3 76.1 - - - +
293Q LYS* 1.3 54.2 + - - +
295Q TYR* 3.8 6.2 - - - +
296Q SER* 2.6 36.5 + - - -
633Q THR* 5.7 0.3 + - - -
635Q ALA* 6.1 0.7 - - - +
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Residues in contact with LYS 293 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133Q LEU 3.1 19.7 + - - +
134Q MET 4.1 4.0 - - - +
136Q SER* 2.4 30.5 + - - +
137Q ASP* 2.7 42.4 + - - +
138Q LEU* 4.0 14.1 - - + -
289Q PRO 3.1 12.8 + - - +
290Q VAL 3.1 8.0 + - - +
292Q ASN* 1.3 76.9 - - - +
294Q ILE* 1.3 66.5 + - + +
296Q SER* 2.7 19.8 + - - -
297Q LYS* 2.9 40.3 + - + +
298Q TYR* 4.7 4.5 - - + -
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Residues in contact with ILE 294 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134Q MET* 3.9 52.5 - - + -
290Q VAL* 3.1 12.4 + - + +
291Q ARG 3.5 10.1 - - - +
293Q LYS* 1.3 77.7 - - + +
295Q TYR* 1.3 77.1 + - + +
298Q TYR* 3.0 49.0 + - + +
302Q PHE* 3.7 30.2 - - + +
400Q LEU* 4.0 18.6 - - + -
403Q THR* 5.0 4.3 - - + +
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Residues in contact with TYR 295 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288Q GLN* 5.8 0.2 - - - -
291Q ARG* 2.9 47.7 + - + +
292Q ASN* 4.0 6.1 - - - +
294Q ILE* 1.3 87.8 - - + +
296Q SER* 1.3 56.6 + - - +
299Q ALA* 3.1 21.5 - - - +
302Q PHE* 3.5 37.2 - - + -
303Q HIS* 3.2 29.8 + + + +
399Q ASP* 4.1 12.5 + - - -
400Q LEU* 5.7 0.9 - - + +
451Q LYS* 3.1 32.9 + - + +
633Q THR* 3.8 30.7 - - + -
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Residues in contact with SER 296 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292Q ASN 2.6 22.5 + - - -
293Q LYS* 2.7 16.3 + - - -
295Q TYR* 1.3 75.8 - - - +
297Q LYS* 1.3 66.5 + - - +
298Q TYR 3.1 0.7 - - - -
299Q ALA* 2.9 21.9 + - - +
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Residues in contact with LYS 297 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133Q LEU* 5.5 2.2 - - - +
137Q ASP* 5.8 1.8 + - - -
293Q LYS* 2.9 29.3 + - + +
296Q SER* 1.3 82.0 + - - +
298Q TYR* 1.3 102.4 + - + +
299Q ALA 3.4 0.9 + - - -
437Q ASP* 3.4 14.6 + - - -
441Q GLN* 3.9 21.7 - - - +
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Residues in contact with TYR 298 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133Q LEU* 3.4 41.3 + - + +
293Q LYS* 4.6 4.6 - - + -
294Q ILE* 3.0 33.7 + - + +
297Q LYS* 1.3 111.4 + - + +
299Q ALA* 1.3 66.0 + - - +
300Q TYR 3.0 4.6 + - - +
301Q THR 3.1 4.2 + - - -
302Q PHE* 3.1 31.1 + - + +
437Q ASP* 2.8 44.5 + - - -
440Q TRP* 3.5 42.0 - + + -
441Q GLN* 4.0 9.0 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il