Contacts of the helix formed by residues 3 - 50 (chain C) in PDB entry 1JCC
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 3 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A SER* 5.5 1.7 + - - -
6A ILE* 4.2 13.7 - - - +
1C SER* 3.0 14.3 + - - +
2C SER* 1.3 79.8 + - - +
4C ALA* 1.3 64.8 + - - +
5C LYS* 2.8 28.1 - - - +
6C ILE* 3.1 38.9 + - + +
7C ASP* 3.2 13.0 + - - -
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Residues in contact with ALA 4 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2C SER 3.7 4.9 + - - -
3C ASN* 1.3 72.9 - - - +
5C LYS* 1.3 57.3 + - - +
7C ASP* 3.4 9.1 + - - +
8C GLN* 3.1 27.2 + - - +
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Residues in contact with LYS 5 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1A SER* 4.5 11.1 - - - +
6A ILE* 4.1 17.7 - - + -
7A ASP* 2.8 28.2 + - - +
10A SER* 3.4 36.1 + - - +
81A ZN 4.4 5.1 - - - -
3C ASN* 2.8 16.5 - - - +
4C ALA* 1.3 72.2 - - - +
6C ILE* 1.3 60.3 + - - +
8C GLN* 3.4 12.9 + - - +
9C LEU* 3.0 28.7 + - + +
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Residues in contact with ILE 6 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6A ILE* 4.3 26.5 - - + -
6B ILE* 4.3 16.6 - - + -
9B LEU* 3.7 29.2 - - + -
1C SER* 3.8 20.9 - - - +
3C ASN* 3.1 36.7 + - + +
5C LYS* 1.3 76.2 - - - +
7C ASP* 1.3 66.6 + - - +
9C LEU* 3.3 10.5 - - + +
10C SER* 3.0 22.9 + - - -
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Residues in contact with ASP 7 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1C SER* 3.4 15.1 + - - +
3C ASN 3.2 10.6 + - - +
4C ALA* 3.8 9.8 - - - +
5C LYS 3.3 0.2 - - - -
6C ILE* 1.3 78.5 - - - +
8C GLN* 1.3 57.3 + - - +
10C SER* 3.4 7.0 + - - -
11C SER* 3.0 27.4 + - - -
83C ZN 2.2 35.9 - - - -
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Residues in contact with GLN 8 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10A SER* 4.6 13.1 + - - -
4C ALA 3.1 16.4 + - - +
5C LYS* 3.7 12.5 + - - +
6C ILE 3.2 0.2 - - - -
7C ASP* 1.3 77.4 - - - +
9C LEU* 1.3 57.9 + - - +
11C SER* 3.2 6.9 + - - -
12C ASP* 3.0 43.4 + - - +
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Residues in contact with LEU 9 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6A ILE* 4.3 10.1 - - + +
9A LEU* 3.9 31.6 - - + +
10A SER* 4.0 26.0 - - - +
13A ALA* 3.5 17.6 - - + +
9B LEU* 4.0 35.2 - - + +
13B ALA* 5.6 2.9 - - + -
5C LYS 3.0 19.4 + - - +
6C ILE* 3.3 22.0 - - + +
8C GLN* 1.3 74.7 - - - +
10C SER* 1.3 70.7 + - - +
12C ASP* 3.4 4.0 + - - -
13C ALA* 3.0 22.6 + - + +
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Residues in contact with SER 10 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9B LEU* 4.3 17.3 - - - +
12B ASP* 5.3 5.1 + - - -
6C ILE* 3.0 17.3 + - - -
7C ASP* 3.7 8.5 - - - -
9C LEU* 1.3 83.4 - - - +
11C SER* 1.3 61.7 + - - +
13C ALA* 3.4 5.0 + - - +
14C GLN* 3.1 31.1 + - - +
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Residues in contact with SER 11 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7C ASP 3.0 14.3 + - - -
8C GLN* 3.2 11.4 + - - -
10C SER* 1.3 77.6 - - - +
12C ASP* 1.3 60.1 + - - +
14C GLN* 3.4 6.5 + - - +
15C THR* 2.9 40.1 + - - -
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Residues in contact with ASP 12 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A SER 5.0 1.6 - - - +
13A ALA* 3.8 21.4 - - + +
14A GLN* 4.2 19.5 + - - +
17A ASN* 4.1 16.2 + - + +
8C GLN* 3.0 36.5 + - - +
9C LEU* 3.7 7.5 - - - +
10C SER 3.3 0.2 - - - -
11C SER* 1.3 78.1 + - - +
13C ALA* 1.3 60.9 + - - +
15C THR* 3.9 5.0 - - - -
16C ALA* 2.9 31.9 + - - +
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Residues in contact with ALA 13 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A ALA* 4.3 8.7 - - + +
12B ASP* 4.2 34.1 - - + +
13B ALA* 4.5 6.5 - - - +
16B ALA* 3.7 14.2 - - + +
9C LEU* 3.0 18.6 + - + +
10C SER* 3.8 6.3 - - - +
11C SER 3.3 0.2 - - - -
12C ASP* 1.3 77.3 - - - +
14C GLN* 1.3 63.9 + - + +
16C ALA* 3.4 1.2 + - - -
17C ASN* 3.0 25.5 + - - +
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Residues in contact with GLN 14 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12B ASP* 6.4 1.8 - - + -
10C SER* 3.1 22.8 + - - +
11C SER* 3.7 5.2 - - - +
13C ALA* 1.3 77.1 - - + +
15C THR* 1.3 62.4 + - - +
17C ASN* 3.4 6.6 + - - +
18C ALA* 3.2 24.1 + - - +
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Residues in contact with THR 15 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17A ASN* 3.6 10.1 - - - +
11C SER* 2.9 24.4 + - - -
12C ASP* 3.9 4.9 - - - -
14C GLN* 1.3 77.2 - - - +
16C ALA* 1.3 62.2 + - - +
18C ALA* 3.5 5.1 + - + +
19C LYS* 3.1 52.3 + - + +
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Residues in contact with ALA 16 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16A ALA* 3.7 16.8 - - + +
17A ASN* 3.6 35.4 + - - +
20A ALA* 3.7 8.2 - - - +
16B ALA* 4.3 8.1 - - + +
20B ALA* 5.6 0.4 - - + -
12C ASP 2.9 19.7 + - - +
13C ALA 3.7 4.0 - - - +
14C GLN 3.2 0.2 - - - -
15C THR* 1.3 73.9 - - - +
17C ASN* 1.3 64.9 + - - +
19C LYS 3.4 0.5 + - - -
20C ALA* 2.9 26.4 + - - +
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Residues in contact with ASN 17 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12B ASP 5.6 0.6 + - - -
15B THR* 3.8 19.0 - - - +
16B ALA* 4.5 11.7 - - + +
19B LYS* 3.0 43.7 + - - +
13C ALA 3.0 16.4 + - - +
14C GLN* 3.7 7.0 - - - +
15C THR 3.4 0.2 - - - -
16C ALA* 1.3 76.1 - - - +
18C ALA* 1.3 62.9 + - - +
20C ALA* 3.3 6.8 + - - +
21C ASP* 3.1 26.7 + - - +
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Residues in contact with ALA 18 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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14C GLN 3.2 13.7 + - - +
15C THR* 3.9 5.8 - - - +
17C ASN* 1.3 80.7 - - - +
19C LYS* 1.3 61.9 + - + +
21C ASP* 3.3 10.3 + - - +
22C GLN* 3.1 21.8 + - - +
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Residues in contact with LYS 19 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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17A ASN* 3.2 25.1 + - - +
20A ALA* 3.8 16.4 - - + -
21A ASP* 2.8 32.8 + - - +
24A SER* 4.1 12.8 + - - +
15C THR* 3.1 37.9 + - + +
16C ALA 3.8 3.4 - - - +
18C ALA* 1.3 77.4 - - + +
20C ALA* 1.3 58.6 + - - +
22C GLN* 3.3 7.1 + - - +
23C ALA* 2.9 30.4 + - - +
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Residues in contact with ALA 20 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A ALA* 4.2 6.3 - - + +
19B LYS* 3.7 39.0 - - + +
20B ALA* 3.9 8.7 - - - +
23B ALA* 3.5 9.8 - - + +
16C ALA 2.9 17.7 + - - +
17C ASN 3.3 4.9 + - - +
19C LYS* 1.3 77.8 - - - +
21C ASP* 1.3 63.1 + - - +
23C ALA* 3.3 2.7 + - - -
24C SER* 3.0 28.0 + - - -
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Residues in contact with ASP 21 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19B LYS* 3.0 37.0 + - - +
22B GLN* 5.7 1.2 - - - +
17C ASN* 3.1 18.0 + - - +
18C ALA* 3.5 11.9 - - - +
19C LYS 3.3 0.2 - - - -
20C ALA* 1.3 77.3 - - - +
22C GLN* 1.3 61.8 + - - +
24C SER* 3.4 4.9 + - - -
25C ASN* 3.1 33.3 + - - +
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Residues in contact with GLN 22 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24A SER* 5.9 0.4 - - - +
18C ALA 3.1 10.0 + - - +
19C LYS* 3.6 10.3 - - - +
20C ALA 3.3 0.2 - - - -
21C ASP* 1.3 80.8 - - - +
23C ALA* 1.3 62.0 + - - +
25C ASN* 3.2 13.0 + - + +
26C ASP* 3.0 34.4 + - - +
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Residues in contact with ALA 23 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A ALA 4.8 0.2 - - - +
23A ALA* 3.9 18.8 - - + +
24A SER* 3.8 31.4 + - - +
27A ALA* 3.5 15.0 - - - +
23B ALA* 4.2 5.4 - - + +
27B ALA* 5.4 0.3 - - - +
19C LYS 2.9 18.1 + - - +
20C ALA* 3.6 5.2 - - - +
22C GLN* 1.3 77.4 - - - +
24C SER* 1.3 57.1 + - - +
26C ASP* 3.4 2.8 + - - -
27C ALA* 2.9 26.2 + - - +
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Residues in contact with SER 24 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22B GLN* 4.0 13.2 + - - -
23B ALA* 3.5 15.3 - - - +
26B ASP* 3.2 25.8 + - - +
20C ALA 3.0 18.0 + - - -
21C ASP* 3.8 6.1 - - - -
23C ALA* 1.3 73.6 - - - +
25C ASN* 1.3 68.9 + - - +
27C ALA* 3.2 7.5 + - - +
28C ASN* 3.0 31.5 + - - -
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Residues in contact with ASN 25 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21C ASP* 3.1 26.2 + - - +
22C GLN* 3.4 12.6 - - + +
24C SER* 1.3 79.1 - - - +
26C ASP* 1.3 59.7 + - - +
28C ASN* 3.3 8.2 + - - +
29C ALA* 3.0 26.4 + - - +
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Residues in contact with ASP 26 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24A SER 5.6 0.5 - - - +
27A ALA* 3.7 17.8 - - + +
28A ASN* 5.4 3.6 + - - +
31A ARG* 3.1 44.7 + - + +
22C GLN* 3.0 30.2 + - - +
23C ALA* 3.7 5.5 - - - +
25C ASN* 1.3 77.5 - - - +
27C ALA* 1.3 59.8 + - - +
29C ALA* 3.3 2.9 + - - +
30C ALA* 3.0 23.9 + - - +
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Residues in contact with ALA 27 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A ALA* 4.0 5.5 - - + +
26B ASP* 3.8 39.3 - - + +
27B ALA* 4.1 6.1 - - - +
30B ALA* 3.8 10.7 - - + +
23C ALA 2.9 17.4 + - - +
24C SER 3.2 5.8 + - - +
26C ASP* 1.3 75.6 - - - +
28C ASN* 1.3 65.2 + - - +
30C ALA* 3.2 6.2 + - - +
31C ARG* 3.0 27.2 + - - +
----------------------------------------------------------
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Residues in contact with ASN 28 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26B ASP* 5.4 9.5 + - - +
24C SER* 3.0 19.3 + - - +
25C ASN* 3.7 10.8 - - - +
27C ALA* 1.3 79.7 - - - +
29C ALA* 1.3 62.2 + - - +
31C ARG* 3.3 20.4 + - - +
32C SER* 3.1 21.0 + - - -
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Residues in contact with ALA 29 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31A ARG* 3.6 33.2 - - - +
25C ASN 3.0 14.0 + - - +
26C ASP 3.6 8.1 - - - +
28C ASN* 1.3 75.4 - - - +
30C ALA* 1.3 64.0 + - - +
32C SER* 3.0 17.7 + - - -
33C ASP* 3.0 18.5 + - - +
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Residues in contact with ALA 30 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A ALA* 3.8 42.2 - - + +
31A ARG* 3.8 9.6 - - + +
34A ALA* 3.6 10.7 - - + +
30B ALA* 4.5 5.6 - - + +
34B ALA* 5.8 0.4 - - + -
26C ASP 3.0 13.8 + - - +
27C ALA* 3.5 9.2 - - - +
29C ALA* 1.3 77.4 - - - +
31C ARG* 1.3 57.0 + - - +
33C ASP* 3.2 3.3 + - - +
34C ALA* 2.8 30.8 + - - +
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Residues in contact with ARG 31 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26B ASP 4.9 2.4 + - - -
29B ALA* 3.5 33.2 + - - +
30B ALA* 4.1 17.6 - - + +
33B ASP* 3.7 37.2 + - - +
27C ALA* 3.0 16.5 + - - +
28C ASN* 3.6 23.8 - - - +
29C ALA 3.2 0.2 - - - -
30C ALA* 1.3 77.1 - - - +
32C SER* 1.3 57.2 + - - +
34C ALA* 3.4 2.1 + - - +
35C GLN* 3.0 27.4 + - - +
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Residues in contact with SER 32 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28C ASN 3.1 11.8 + - - -
29C ALA* 3.0 13.5 + - - -
31C ARG* 1.3 75.0 - - - +
33C ASP* 1.3 62.3 + - - +
35C GLN* 3.3 7.3 + - - +
36C ALA* 3.0 25.6 + - - +
----------------------------------------------------------
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Residues in contact with ASP 33 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A ARG* 4.6 20.4 + - - +
34A ALA* 3.8 15.8 - - + +
35A GLN* 4.4 11.1 + - - -
38A LYS* 3.4 42.4 + - + +
29C ALA* 3.0 15.5 + - - +
30C ALA* 3.8 6.4 - - - +
32C SER* 1.3 76.5 + - - +
34C ALA* 1.3 61.4 + - - +
36C ALA* 3.2 5.8 + - - +
37C ALA* 2.9 25.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA 34 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A ALA* 3.9 6.4 - - + +
30B ALA 5.9 0.4 - - - +
33B ASP* 3.0 33.9 - - - +
34B ALA* 4.4 8.5 - - - -
37B ALA* 3.6 18.8 - - + +
30C ALA 2.8 16.8 + - - +
31C ARG* 3.6 1.8 - - - +
32C SER 3.2 0.2 - - - -
33C ASP* 1.3 77.8 - - - +
35C GLN* 1.3 56.1 + - - +
37C ALA* 3.3 4.7 + - - +
38C LYS* 3.0 34.1 + - - +
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Residues in contact with GLN 35 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33B ASP* 5.0 0.4 + - - -
31C ARG 3.0 13.4 + - - +
32C SER* 3.5 10.5 - - - +
33C ASP 3.2 0.2 - - - -
34C ALA* 1.3 75.6 - - - +
36C ALA* 1.3 59.4 + - - +
38C LYS* 3.2 25.4 + - - +
39C ASP* 2.8 61.8 + - - +
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Residues in contact with ALA 36 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A LYS* 4.2 17.0 - - + +
32C SER 3.0 14.2 + - - +
33C ASP* 3.2 14.1 + - - +
35C GLN* 1.3 77.5 - - - +
37C ALA* 1.3 61.8 + - - +
39C ASP* 3.4 7.3 + - - +
40C ASP* 3.0 25.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 37 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A ALA 4.5 0.2 - - - +
37A ALA* 3.7 19.7 - - + +
38A LYS* 3.7 33.1 - - + +
41A ALA* 3.6 8.5 - - + +
37B ALA* 4.1 8.3 - - + +
41B ALA* 5.4 0.4 - - + +
33C ASP 2.9 13.1 + - - +
34C ALA* 3.5 9.2 - - - +
36C ALA* 1.3 76.8 - - - +
38C LYS* 1.3 57.4 + - - +
40C ASP* 3.3 0.9 + - - -
41C ALA* 2.9 30.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 38 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33B ASP* 2.7 44.2 + - - -
36B ALA* 4.7 6.9 - - - +
37B ALA* 4.1 13.2 - - + +
40B ASP* 3.5 26.1 - - - +
34C ALA 3.0 21.3 + - - +
35C GLN* 3.2 27.8 + - - +
37C ALA* 1.3 75.6 - - - +
39C ASP* 1.3 59.3 + - - +
41C ALA* 3.3 5.8 + - - +
42C ALA* 3.0 29.1 + - - +
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Residues in contact with ASP 39 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35C GLN* 2.8 48.6 + - - +
36C ALA* 3.7 6.6 - - - +
38C LYS* 1.3 75.9 - - - +
40C ASP* 1.3 58.1 + - - +
42C ALA* 3.3 7.6 + - - +
43C ARG* 3.0 26.2 + - - +
----------------------------------------------------------
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Residues in contact with ASP 40 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A LYS* 4.9 1.7 - - - +
41A ALA* 3.6 26.1 - - + +
42A ALA* 3.7 9.4 + - - +
45A ASN* 3.0 36.9 + - - -
36C ALA 3.0 17.5 + - - +
37C ALA* 4.7 0.4 - - - -
38C LYS 3.3 0.2 - - - -
39C ASP* 1.3 72.4 - - - +
41C ALA* 1.3 65.7 + - - +
43C ARG* 3.0 34.1 + - - +
44C ALA* 3.1 9.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 41 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A ALA* 3.8 7.5 - - + +
40B ASP* 3.9 30.3 - - + +
41B ALA* 4.0 13.7 - - - +
44B ALA* 4.1 8.9 - - + +
37C ALA 2.9 16.7 + - - +
38C LYS 3.7 4.7 - - - +
40C ASP* 1.3 73.6 - - - +
42C ALA* 1.3 65.3 + - - +
44C ALA* 3.2 6.1 + - - +
45C ASN* 3.1 28.8 + - - +
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Residues in contact with ALA 42 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C LYS 3.0 17.0 + - - +
39C ASP* 3.6 7.4 - - - +
40C ASP 3.3 0.2 - - - -
41C ALA* 1.3 74.0 - - - +
43C ARG* 1.3 67.0 + - - +
45C ASN* 3.3 10.1 + - - +
46C GLN* 2.9 25.1 + - - +
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Residues in contact with ARG 43 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A ASN* 3.2 35.0 + - - +
39C ASP 3.0 14.9 + - - +
40C ASP* 3.0 33.8 + - - +
42C ALA* 1.3 78.1 - - - +
44C ALA* 1.3 61.8 + - - +
46C GLN* 3.2 10.4 + - + +
47C ARG* 3.0 50.8 + - + +
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Residues in contact with ALA 44 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A ALA* 4.0 19.3 - - + -
45A ASN* 3.7 21.9 + - - +
48A LEU* 3.5 23.3 - - + +
44B ALA* 4.4 6.7 - - + +
48B LEU* 5.7 1.3 - - + -
40C ASP 3.1 11.1 + - - +
41C ALA* 3.2 9.6 + - - +
43C ARG* 1.3 77.2 - - - +
45C ASN* 1.3 62.1 + - - +
47C ARG 3.2 1.7 + - - -
48C LEU* 3.0 21.3 + - - +
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Residues in contact with ASN 45 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40B ASP 5.2 1.8 + - - -
43B ARG* 5.5 1.8 - - - +
44B ALA* 3.8 22.0 - - - +
47B ARG* 3.2 40.8 + - - +
41C ALA* 3.1 24.9 + - - +
42C ALA* 3.3 10.3 + - - +
44C ALA* 1.3 75.7 - - - +
46C GLN* 1.3 57.9 + - - +
48C LEU* 3.4 6.3 + - - +
49C ASP* 3.0 35.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 46 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42C ALA 2.9 17.1 + - - +
43C ARG* 3.6 9.7 - - - +
44C ALA 3.2 0.2 - - - -
45C ASN* 1.3 76.6 - - - +
47C ARG* 1.3 60.7 + - + +
49C ASP* 3.3 6.4 + - - +
50C ASN* 2.9 53.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 47 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A ASN* 3.0 51.4 + - - +
48A LEU* 3.7 24.4 + - + +
49A ASP* 2.8 34.3 + - - +
43C ARG* 3.0 38.7 + - + +
44C ALA 3.2 5.8 + - - +
46C GLN* 1.3 77.4 - - + +
48C LEU* 1.3 62.6 + - - +
50C ASN* 3.3 6.3 + - - +
51C MET* 3.3 24.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 48 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A LEU* 4.6 8.7 - - + +
47B ARG* 3.5 59.0 - - + +
48B LEU* 4.1 14.1 - - + -
51B MET* 3.9 22.4 - - + -
44C ALA 3.0 12.6 + - - +
45C ASN* 3.6 9.6 - - - +
47C ARG* 1.3 77.8 - - - +
49C ASP* 1.3 62.1 + - - +
50C ASN 3.4 0.5 + - - -
51C MET* 3.4 51.1 + - + +
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Residues in contact with ASP 49 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47B ARG* 3.0 30.7 + - - -
45C ASN* 3.0 23.3 + - - +
46C GLN* 3.8 6.7 - - - +
48C LEU* 1.3 78.4 - - - +
50C ASN* 1.3 68.7 + - - +
51C MET 3.3 3.8 + - - +
----------------------------------------------------------
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Residues in contact with ASN 50 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C GLN* 2.9 38.7 + - - +
47C ARG* 3.3 7.2 + - - +
48C LEU 3.2 0.6 - - - -
49C ASP* 1.3 83.9 + - - +
51C MET* 1.3 64.4 + - - +
52C ALA* 3.6 1.7 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il