Contacts of the helix formed by residues 4 - 35 (chain A) in PDB entry 1JGC


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASP 4 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      3A  GLY*     1.3    70.9    -      -       -      -
      5A  ALA*     1.3    67.4    +      -       -      +
      6A  LYS*     3.0    20.8    +      -       -      +
      7A  VAL*     2.8    32.7    +      -       +      +
      8A  ILE*     3.2    11.4    +      -       -      +
     65A  LEU*     5.3     0.4    -      -       -      +
    107A  TYR*     2.8    33.9    +      -       -      -
    111A  VAL*     3.8    26.0    -      -       +      +
    113A  ASP*     5.5     2.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 5 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      2A  LYS*     6.3     1.3    -      -       -      +
      3A  GLY      3.3     7.1    +      -       -      -
      4A  ASP*     1.3    72.2    -      -       -      +
      6A  LYS*     1.3    61.7    +      -       -      +
      8A  ILE*     3.3    13.5    +      -       -      +
      9A  GLU*     3.1    26.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 6 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      4A  ASP*     3.0    13.0    +      -       -      +
      5A  ALA*     1.3    76.3    -      -       -      +
      7A  VAL*     1.3    64.5    +      -       -      +
      9A  GLU*     3.2    23.1    +      -       +      +
     10A  PHE*     3.0    47.5    +      -       +      -
    107A  TYR*     3.5    34.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 7 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      4A  ASP*     2.8    29.8    +      -       +      +
      6A  LYS*     1.3    77.1    -      -       -      +
      8A  ILE*     1.3    58.4    +      -       -      +
     10A  PHE*     3.1     7.4    +      -       -      +
     11A  LEU*     2.9    40.5    +      -       +      +
     65A  LEU*     4.0     4.5    -      -       +      -
    107A  TYR*     3.8    21.3    -      -       +      -
    108A  CYS*     4.0    16.4    -      -       -      -
    111A  VAL*     4.6     3.4    -      -       +      -
    113A  ASP*     3.6    31.2    -      -       +      +
    116A  SER*     3.8    17.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 8 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      2A  LYS*     5.1     5.4    -      -       -      -
      3A  GLY      4.4     8.5    -      -       -      +
      4A  ASP      3.2    14.0    +      -       -      +
      5A  ALA*     3.5    10.8    -      -       -      +
      7A  VAL*     1.3    77.4    -      -       -      +
      9A  GLU*     1.3    62.3    +      -       -      +
     11A  LEU*     3.4     9.6    +      -       +      +
     12A  ASN*     3.0    37.6    +      -       -      +
     62A  ILE*     4.6     7.4    -      -       +      +
     65A  LEU*     3.5    44.2    -      -       +      +
     66A  GLU      4.5     0.7    -      -       -      +
     67A  GLY*     3.7    28.0    -      -       -      +
     68A  HIS      4.7     1.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 9 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      5A  ALA*     3.1    18.4    +      -       -      +
      6A  LYS*     3.4    28.7    -      -       +      +
      7A  VAL      3.2     0.2    -      -       -      -
      8A  ILE*     1.3    78.3    -      -       -      +
     10A  PHE*     1.3    61.8    +      -       +      +
     12A  ASN*     3.2     7.2    +      -       -      +
     13A  ALA*     3.0    23.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 10 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      6A  LYS*     3.0    44.4    +      -       +      -
      7A  VAL*     3.5     8.3    -      -       -      +
      9A  GLU*     1.3    77.2    -      -       +      +
     11A  LEU*     1.3    56.2    +      -       -      +
     13A  ALA*     3.1     6.9    +      -       +      +
     14A  ALA*     2.8    29.5    +      -       -      +
    100A  LEU*     4.2    19.0    -      -       +      +
    103A  GLU*     3.9    27.8    -      -       +      -
    104A  ALA*     3.4    46.8    -      -       +      +
    107A  TYR*     3.5    36.3    -      +       +      -
    108A  CYS*     5.8     0.9    -      -       -      -
    120A  PHE*     4.2     7.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 11 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7A  VAL*     2.9    28.8    +      -       +      +
      8A  ILE*     3.7     4.3    -      -       -      +
     10A  PHE*     1.3    76.2    -      -       -      +
     12A  ASN*     1.3    57.4    +      -       -      +
     14A  ALA*     3.2     2.6    +      -       -      +
     15A  LEU*     2.8    28.6    +      -       -      +
     58A  ILE*     3.5    24.3    -      -       +      +
     61A  ARG*     3.9    22.9    -      -       +      -
     62A  ILE*     3.6    27.8    -      -       +      -
     65A  LEU*     3.8    28.7    -      -       +      -
    116A  SER*     4.4     4.7    -      -       -      +
    119A  ILE*     5.2     7.2    -      -       +      -
    120A  PHE*     3.6    27.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 12 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      8A  ILE*     3.0    30.4    +      -       -      +
      9A  GLU*     3.2     6.6    +      -       -      +
     11A  LEU*     1.3    74.0    -      -       -      +
     13A  ALA*     1.3    64.4    +      -       -      +
     15A  LEU*     3.5     8.2    +      -       -      +
     16A  ARG*     3.1    26.4    +      -       -      +
     62A  ILE*     3.7    12.3    -      -       -      +
     68A  HIS      3.1    21.3    +      -       -      -
     69A  PRO*     3.6     3.6    -      -       -      +
     70A  ASN*     2.9    40.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 13 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9A  GLU      3.0    13.4    +      -       -      +
     10A  PHE*     3.1    11.2    +      -       +      +
     12A  ASN*     1.3    74.9    -      -       -      +
     14A  ALA*     1.3    67.9    +      -       -      +
     16A  ARG*     3.2    15.8    +      -       -      +
     17A  SER*     2.9    22.5    +      -       -      -
     75A  ASP*     4.8     1.2    -      -       -      +
    100A  LEU*     3.8    23.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 14 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10A  PHE      2.8    13.4    +      -       -      +
     11A  LEU*     3.5     8.3    -      -       -      +
     13A  ALA*     1.3    77.2    -      -       -      +
     15A  LEU*     1.3    55.4    +      -       -      +
     17A  SER*     3.1     3.9    +      -       -      -
     18A  GLU*     2.9    35.2    +      -       -      +
     58A  ILE*     4.0    12.1    -      -       +      -
    100A  LEU*     3.9    12.0    -      -       +      +
    101A  TYR*     3.6    24.6    +      -       +      -
    120A  PHE*     3.8    17.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 15 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11A  LEU      2.8    16.5    +      -       -      +
     12A  ASN*     3.5    17.5    -      -       -      +
     13A  ALA      3.2     0.2    -      -       -      -
     14A  ALA*     1.3    76.7    -      -       -      +
     16A  ARG*     1.3    58.2    +      -       -      +
     18A  GLU*     3.1     6.1    +      -       -      +
     19A  LEU*     2.8    50.0    +      -       +      +
     55A  ALA*     4.0    22.4    -      -       +      +
     58A  ILE*     4.0    10.7    -      -       +      +
     59A  ILE*     3.9    27.8    -      -       +      -
     62A  ILE*     4.5     4.0    -      -       +      -
     69A  PRO*     4.4     3.1    -      -       +      -
     70A  ASN      3.8    11.4    -      -       -      +
     71A  LEU*     3.2    29.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 16 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12A  ASN*     3.1    20.5    +      -       -      +
     13A  ALA*     3.2    15.8    +      -       -      +
     15A  LEU*     1.3    77.1    -      -       -      +
     17A  SER*     1.3    56.5    +      -       -      +
     19A  LEU*     3.5     7.5    +      -       -      +
     20A  THR*     2.7    33.6    +      -       -      -
     70A  ASN*     3.9    29.8    +      -       -      +
     73A  LYS*     3.6    48.9    +      -       -      +
     74A  LEU*     4.2     1.7    -      -       -      -
     75A  ASP*     2.8    40.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 17 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13A  ALA      2.9    12.2    +      -       -      -
     14A  ALA*     3.1    14.3    +      -       -      -
     16A  ARG*     1.3    77.4    -      -       -      +
     18A  GLU*     1.3    58.3    +      -       -      +
     20A  THR*     3.2     6.8    +      -       -      -
     21A  ALA*     3.0    26.0    +      -       -      +
     75A  ASP*     3.7    14.3    +      -       -      -
     93A  GLY      5.3     0.5    +      -       -      -
     97A  ALA*     3.7    27.7    +      -       -      +
    100A  LEU*     4.2    10.7    -      -       -      +
    101A  TYR*     4.2     5.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 18 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     14A  ALA      2.9    20.3    +      -       -      +
     15A  LEU*     3.5     6.7    -      -       -      +
     17A  SER*     1.3    75.7    +      -       -      +
     19A  LEU*     1.3    60.7    +      -       -      +
     20A  THR      3.0     1.6    -      -       -      -
     21A  ALA*     3.0     6.7    +      -       -      +
     22A  ILE*     2.8    34.9    +      -       -      +
     51A  GLU*     2.5    33.0    -      -       -      +
     54A  HIS*     3.0    31.4    +      -       +      +
     55A  ALA*     4.3    17.5    -      -       +      +
     58A  ILE*     4.3    11.0    -      -       +      -
     97A  ALA*     5.1     1.6    -      -       -      +
    101A  TYR*     2.6    25.4    +      -       -      +
    123A  LEU*     4.1     3.1    -      -       -      +
    127A  GLU*     3.7     5.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 19 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15A  LEU*     2.8    41.4    +      -       +      +
     16A  ARG*     3.9     4.7    -      -       -      +
     18A  GLU*     1.3    72.8    -      -       -      +
     20A  THR*     1.3    61.7    +      -       -      +
     22A  ILE*     3.6    11.2    -      -       +      +
     23A  SER*     3.3    24.1    +      -       -      -
     55A  ALA*     4.6     2.9    -      -       +      -
     70A  ASN      4.6     0.2    -      -       -      +
     71A  LEU*     3.5    45.8    -      -       +      +
     73A  LYS      4.3     5.4    -      -       -      +
     74A  LEU*     3.3    25.9    -      -       +      +
    201A  HEM      3.6    37.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 20 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16A  ARG      2.7    18.6    +      -       -      -
     17A  SER*     3.3     9.6    -      -       -      -
     18A  GLU      3.0     0.4    -      -       -      -
     19A  LEU*     1.3    74.3    -      -       -      +
     21A  ALA*     1.3    66.6    +      -       -      +
     23A  SER      3.3     1.7    +      -       -      -
     24A  GLN*     2.9    26.7    +      -       -      +
     74A  LEU*     3.5    10.4    -      -       +      +
     75A  ASP*     2.7    48.0    +      -       +      +
     76A  PRO      3.9    12.8    -      -       -      +
     77A  LEU*     3.6    15.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 21 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17A  SER      3.0    12.9    +      -       -      +
     18A  GLU*     3.5    10.1    -      -       -      +
     20A  THR*     1.3    77.2    -      -       -      +
     22A  ILE*     1.3    63.2    +      -       -      +
     24A  GLN*     4.3     7.2    -      -       -      +
     25A  TYR*     2.8    42.7    +      -       +      -
     51A  GLU*     3.8    24.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 22 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     18A  GLU      2.8    20.7    +      -       -      +
     19A  LEU*     3.6    12.6    -      -       +      +
     21A  ALA*     1.3    75.9    -      -       -      +
     23A  SER*     1.3    59.7    +      -       -      +
     26A  TRP*     3.0    17.9    +      -       +      +
     48A  SER*     2.9    33.0    +      -       -      +
     51A  GLU*     3.5    23.8    -      -       +      +
     52A  MET*     3.5    45.1    -      -       +      +
     55A  ALA*     4.2    13.0    -      -       +      -
    201A  HEM      4.0    37.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 23 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19A  LEU      3.3     9.9    +      -       -      -
     20A  THR      3.3     6.1    +      -       -      -
     21A  ALA      3.3     0.6    -      -       -      -
     22A  ILE*     1.3    76.5    -      -       -      +
     24A  GLN*     1.3    66.4    +      -       -      +
     26A  TRP*     3.9     5.3    -      -       -      +
     27A  VAL*     3.0    34.4    +      -       -      +
     74A  LEU*     3.8    18.1    -      -       -      +
     77A  LEU*     4.1    11.0    -      -       -      -
    201A  HEM      4.1    17.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 24 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20A  THR*     2.9    21.4    +      -       -      +
     21A  ALA*     3.7     7.6    -      -       -      +
     23A  SER*     1.3    76.4    -      -       -      +
     25A  TYR*     1.3    64.4    +      -       +      +
     27A  VAL*     3.5     1.0    +      -       -      +
     28A  HIS*     3.1    32.7    +      -       +      +
     76A  PRO      4.8     1.2    -      -       -      +
     77A  LEU*     3.8    13.1    -      -       +      +
     78A  ARG*     2.9    52.5    +      -       -      +
     79A  ILE*     4.5     5.8    -      -       +      -
     89A  CYS      3.2    25.1    +      -       -      -
     90A  ASP*     3.0    28.1    +      -       -      +
     93A  GLY*     5.0     5.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 25 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     21A  ALA*     2.8    37.2    +      -       +      +
     24A  GLN*     1.3    77.7    -      -       +      +
     26A  TRP*     1.3    58.3    +      -       -      +
     28A  HIS*     3.3     5.6    +      -       -      +
     29A  PHE*     2.8    28.4    +      -       -      +
     44A  SER*     3.6    12.3    -      -       -      +
     47A  GLU*     3.5    38.3    +      -       +      -
     48A  SER*     3.5    27.4    -      -       -      -
     51A  GLU*     3.9    27.1    -      -       +      -
     90A  ASP*     3.5    38.7    +      -       +      +
     94A  GLU*     2.5    36.9    +      -       -      +
    130A  HIS*     4.3     2.3    +      -       -      -
    134A  LEU*     4.8     1.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with TRP 26 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22A  ILE      3.0    17.6    +      -       -      +
     23A  SER*     3.9     6.5    -      -       -      +
     24A  GLN      3.3     0.2    -      -       -      -
     25A  TYR*     1.3    76.6    -      -       -      +
     27A  VAL*     1.3    65.5    +      -       +      +
     29A  PHE*     3.2    27.1    +      +       -      +
     30A  ARG*     3.1    33.0    +      -       +      +
     45A  ARG*     3.5    43.5    -      -       +      -
     48A  SER*     3.3    26.2    +      -       -      +
     49A  ILE*     4.1    10.8    -      -       +      -
     52A  MET*     3.7    20.4    -      -       +      -
    201A  HEM      3.6    61.9    -      +       +      +
----------------------------------------------------------
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Residues in contact with VAL 27 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23A  SER*     3.0    26.8    +      -       -      +
     24A  GLN      3.9     3.4    -      -       -      +
     26A  TRP*     1.3    77.0    -      -       +      +
     28A  HIS*     1.3    58.7    +      -       -      +
     30A  ARG*     3.2     7.2    +      -       +      +
     31A  LEU*     2.8    49.7    +      -       +      +
     77A  LEU*     5.8     4.3    -      -       +      -
     79A  ILE*     4.0    25.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 28 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24A  GLN*     3.1    21.0    +      -       +      +
     25A  TYR*     3.5     6.7    -      -       -      +
     27A  VAL*     1.3    78.0    -      -       -      +
     29A  PHE*     1.3    56.4    +      -       -      +
     31A  LEU*     3.7     4.7    -      -       +      +
     32A  GLN*     2.8    44.9    +      -       -      +
     44A  SER*     4.1    10.3    -      -       -      +
     78A  ARG      3.4    18.9    +      -       -      -
     79A  ILE*     3.6    14.5    -      -       +      -
     80A  GLY      3.1    23.9    +      -       -      -
     86A  THR*     3.5    37.7    -      -       +      +
     89A  CYS*     4.0     2.0    -      -       +      -
     90A  ASP*     3.0    35.1    +      -       -      -
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Residues in contact with PHE 29 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25A  TYR      2.8    14.0    +      -       -      +
     26A  TRP*     3.4    35.2    -      +       -      +
     27A  VAL      3.2     0.2    -      -       -      -
     28A  HIS*     1.3    77.5    -      -       -      +
     30A  ARG*     1.3    98.4    +      -       +      +
     32A  GLN*     3.9     2.5    -      -       -      -
     33A  GLU*     2.9    48.2    +      -       +      +
     41A  ALA*     3.3    28.9    -      -       +      +
     42A  LYS*     5.0     2.9    -      -       +      -
     44A  SER*     3.8    11.8    -      -       -      -
     45A  ARG*     3.3    45.1    -      -       +      +
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Residues in contact with ARG 30 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26A  TRP*     3.1    24.5    +      -       +      +
     27A  VAL*     3.6     9.4    -      -       +      +
     29A  PHE*     1.3   108.0    -      -       +      +
     31A  LEU*     1.3    63.3    +      -       +      +
     33A  GLU*     3.2    26.8    +      -       -      +
     34A  ASP*     3.0    23.2    +      -       -      +
     45A  ARG*     5.9     1.2    -      -       -      +
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Residues in contact with LEU 31 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27A  VAL*     2.8    32.1    +      -       +      +
     28A  HIS*     3.7     9.4    -      -       +      +
     30A  ARG*     1.3    73.6    -      -       +      +
     32A  GLN*     1.3    62.0    +      -       -      +
     34A  ASP*     3.1    10.3    +      -       +      +
     35A  TRP*     3.1    54.6    +      -       +      +
     79A  ILE*     3.6    30.7    -      -       +      -
     80A  GLY      4.1     8.5    -      -       -      +
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Residues in contact with GLN 32 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     28A  HIS*     2.8    28.5    +      -       -      +
     29A  PHE      3.8     2.5    -      -       -      +
     31A  LEU*     1.3    71.6    -      -       -      +
     33A  GLU*     1.3    59.6    +      -       -      +
     35A  TRP*     3.3    29.9    +      -       +      +
     37A  LEU*     3.0    32.5    +      -       +      +
     40A  MET*     3.2    40.6    -      -       +      +
     41A  ALA*     3.4    17.3    -      -       +      +
     44A  SER*     2.8    27.4    +      -       -      -
     86A  THR*     3.3    28.3    +      -       +      -
     87A  LEU*     5.6     0.8    -      -       -      +
     90A  ASP*     5.3     2.0    +      -       -      -
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Residues in contact with GLU 33 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29A  PHE*     2.9    31.9    +      -       +      +
     30A  ARG*     3.4    28.9    -      -       -      +
     31A  LEU      3.1     0.2    -      -       -      -
     32A  GLN*     1.3    77.7    -      -       -      +
     34A  ASP*     1.3    57.7    +      -       -      +
     36A  GLY*     3.0    18.9    +      -       -      -
     37A  LEU      4.9     1.6    -      -       -      +
     38A  ALA*     3.8    21.3    -      -       -      +
     41A  ALA*     3.4    20.3    -      -       -      +
     42A  LYS*     5.1     4.2    +      -       -      +
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Residues in contact with ASP 34 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30A  ARG      3.0    12.3    +      -       -      +
     31A  LEU*     3.1    13.5    +      -       +      +
     33A  GLU*     1.3    77.5    -      -       -      +
     35A  TRP*     1.3    67.7    +      -       +      +
     36A  GLY*     3.1     1.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with TRP 35 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31A  LEU*     3.1    37.9    +      -       +      +
     32A  GLN*     3.6    37.2    -      -       +      +
     33A  GLU      3.2     0.4    -      -       -      -
     34A  ASP*     1.3    85.1    +      -       -      +
     36A  GLY*     1.3    60.6    +      -       -      +
     37A  LEU*     3.3    17.7    +      -       +      +
     80A  GLY      4.2     1.1    -      -       -      -
     81A  GLU*     3.6    20.8    +      -       -      -
     82A  GLY*     3.5    37.5    -      -       -      -
     83A  PRO*     3.7    18.4    -      -       +      -
     86A  THR*     4.0    12.8    -      -       +      -
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il