Contacts of the helix formed by residues 683 - 713 (chain B) in PDB entry 1JQI


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LEU 683 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    399A  FAD      3.7    55.9    -      -       +      +
    675B  ALA*     4.9    11.4    -      -       +      +
    676B  PHE*     5.6     5.2    -      -       +      -
    679B  PRO      4.6     2.7    -      -       -      +
    680B  LEU*     2.9    37.5    +      -       +      +
    682B  LYS*     1.3    79.7    -      -       +      +
    684B  GLN*     1.3    65.6    +      -       -      +
    685B  ASN      4.6     0.7    -      -       -      +
    686B  ILE*     3.1    23.4    +      -       +      +
    687B  GLN*     3.1    14.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 684 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    682B  LYS      3.5     4.2    +      -       -      -
    683B  LEU*     1.3    70.5    -      -       -      +
    685B  ASN*     1.3    63.8    +      -       -      +
    687B  GLN*     3.0    18.6    +      -       +      +
    688B  PHE*     3.0    53.3    +      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 685 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    372A  GLU*     3.2    30.2    -      -       -      +
    399A  FAD      4.2    18.9    +      -       +      -
    683B  LEU*     3.3     0.8    -      -       -      +
    684B  GLN*     1.3    77.1    -      -       -      +
    686B  ILE*     1.3    65.9    +      -       -      +
    688B  PHE*     3.3    10.1    +      -       -      +
    689B  LYS*     3.1    45.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 686 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    399A  FAD      3.9    30.5    -      -       -      +
    670B  ALA*     4.4    11.7    -      -       +      -
    680B  LEU*     3.4    38.4    -      -       +      +
    681B  THR*     4.3     7.0    -      -       -      +
    683B  LEU*     3.1    20.0    +      -       +      +
    685B  ASN*     1.3    84.6    -      -       -      +
    687B  GLN*     1.3    63.2    +      -       -      +
    689B  LYS*     3.3     8.6    +      -       +      +
    690B  LEU*     3.1    36.3    +      -       +      +
    742B  ILE*     4.4    23.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 687 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    681B  THR*     3.2    29.3    +      -       -      +
    682B  LYS*     3.5    24.9    +      -       -      +
    683B  LEU      3.5     7.3    +      -       -      +
    684B  GLN*     3.0    15.7    +      -       -      +
    686B  ILE*     1.3    79.6    -      -       -      +
    688B  PHE*     1.3    61.1    +      -       +      +
    690B  LEU*     3.4    11.3    +      -       +      +
    691B  ALA*     3.0    27.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 688 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    684B  GLN*     3.0    45.1    +      -       +      +
    685B  ASN*     3.6    11.9    -      -       -      +
    687B  GLN*     1.3    80.1    -      -       +      +
    689B  LYS*     1.3    65.5    +      -       +      +
    691B  ALA*     3.4     7.8    +      -       +      +
    692B  ASP*     3.0    31.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 689 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    372A  GLU*     2.8    37.3    +      -       -      +
    399A  FAD      5.2     0.9    -      -       -      -
    685B  ASN*     3.1    39.2    +      -       -      +
    686B  ILE*     3.7    15.5    -      -       +      +
    687B  GLN      3.3     0.2    -      -       -      -
    688B  PHE*     1.3    72.5    -      -       +      +
    690B  LEU*     1.3    62.1    +      -       -      +
    692B  ASP*     3.2     7.7    +      -       -      +
    693B  MET*     2.8    37.8    +      -       +      +
    738B  GLN*     2.9    38.2    -      -       +      +
    741B  GLN*     4.4     6.0    -      -       -      +
    742B  ILE*     4.2    25.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 690 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    663B  LEU*     4.1     9.7    -      -       +      +
    666B  ALA*     4.2     8.3    -      -       +      -
    667B  VAL*     4.0    31.9    -      -       +      +
    670B  ALA*     4.9     3.8    -      -       +      -
    681B  THR*     4.7    16.4    -      -       +      -
    686B  ILE*     3.1    31.0    +      -       +      +
    687B  GLN*     3.7     8.7    -      -       +      +
    689B  LYS*     1.3    76.1    -      -       -      +
    691B  ALA*     1.3    58.7    +      -       -      +
    693B  MET*     3.3    11.7    +      -       -      +
    694B  ALA*     2.9    31.2    +      -       -      +
    742B  ILE*     4.1    20.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 691 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    687B  GLN      3.0    17.4    +      -       -      +
    688B  PHE*     3.6     8.7    -      -       +      +
    690B  LEU*     1.3    77.4    -      -       -      +
    692B  ASP*     1.3    62.0    +      -       -      +
    694B  ALA*     3.3     6.7    +      -       -      +
    695B  LEU*     3.0    29.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 692 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    688B  PHE*     3.0    21.7    +      -       -      +
    689B  LYS*     3.7     6.4    -      -       -      +
    691B  ALA*     1.3    77.0    -      -       -      +
    693B  MET*     1.3    66.2    +      -       +      +
    695B  LEU*     3.8    11.1    -      -       -      +
    696B  ALA*     3.1    25.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 693 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    663B  LEU*     3.7    25.4    -      -       +      -
    666B  ALA*     3.9    21.3    -      -       +      -
    689B  LYS      2.8    33.6    +      -       -      +
    690B  LEU*     3.5    10.5    -      -       -      +
    692B  ASP*     1.3    79.6    -      -       +      +
    694B  ALA*     1.3    62.1    +      -       -      +
    696B  ALA*     3.6     0.4    +      -       -      -
    697B  LEU*     3.2    19.4    +      -       -      +
    735B  ILE*     3.4    60.3    -      -       +      +
    738B  GLN*     3.9    24.2    -      -       +      -
    739B  ALA*     4.4     5.4    -      -       +      +
    742B  ILE*     4.0    11.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 694 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    663B  LEU*     4.3    19.4    -      -       +      +
    690B  LEU      2.9    17.4    +      -       -      +
    691B  ALA*     3.6     6.3    -      -       -      +
    693B  MET*     1.3    77.4    -      -       -      +
    695B  LEU*     1.3    62.9    +      -       -      +
    697B  LEU*     3.3     2.7    +      -       -      +
    698B  GLU*     3.0    42.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 695 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    691B  ALA      3.0    16.8    +      -       -      +
    692B  ASP*     3.8    11.4    -      -       -      +
    694B  ALA*     1.3    77.4    -      -       -      +
    696B  ALA*     1.3    66.3    +      -       +      +
    698B  GLU*     4.2     2.6    -      -       -      +
    699B  SER*     2.9    40.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 696 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    692B  ASP      3.1    16.6    +      -       -      +
    693B  MET      4.0     3.4    -      -       -      +
    695B  LEU*     1.3    85.6    -      -       +      +
    697B  LEU*     1.3    57.3    +      -       -      +
    699B  SER*     3.8     3.3    -      -       -      -
    700B  ALA*     3.1    29.3    +      -       -      +
    727B  ALA      5.2     0.2    -      -       -      +
    731B  ALA*     4.2    20.6    -      -       +      +
    735B  ILE*     4.5     7.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 697 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    656B  LEU*     3.8    36.4    -      -       +      +
    659B  ALA*     3.9    15.5    -      -       +      +
    660B  GLN*     3.5    42.6    -      -       -      +
    663B  LEU*     4.3    16.2    -      -       +      -
    693B  MET      3.2    15.3    +      -       -      +
    694B  ALA*     3.8     3.8    -      -       -      +
    695B  LEU      3.2     0.2    -      -       -      -
    696B  ALA*     1.3    75.7    -      -       -      +
    698B  GLU*     1.3    67.2    +      -       +      +
    699B  SER      3.2     1.1    -      -       -      -
    700B  ALA*     3.3     3.4    +      -       -      -
    701B  ARG*     3.0    34.9    +      -       -      +
    731B  ALA*     5.1     2.0    -      -       +      -
    735B  ILE*     3.9     9.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 698 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    404B  VAL      4.7     3.8    -      -       -      +
    405B  TYR*     4.1    23.8    -      -       +      +
    406B  GLN      5.2     2.8    +      -       -      +
    694B  ALA*     3.0    28.3    +      -       -      +
    695B  LEU*     4.4     2.5    -      -       -      +
    697B  LEU*     1.3    78.7    -      -       +      +
    699B  SER*     1.3    61.8    +      -       -      +
    701B  ARG*     3.3    24.0    +      -       -      +
    702B  LEU*     3.1    30.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 699 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    695B  LEU*     2.9    30.6    +      -       -      +
    696B  ALA*     3.8     6.1    -      -       -      -
    698B  GLU*     1.3    79.6    -      -       -      +
    700B  ALA*     1.3    61.5    +      -       -      +
    702B  LEU*     3.3    17.9    +      -       -      +
    703B  LEU*     3.4    21.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 700 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    656B  LEU*     3.8     8.7    -      -       +      -
    696B  ALA      3.1    19.4    +      -       -      +
    697B  LEU*     3.8     4.3    -      -       -      +
    699B  SER*     1.3    74.9    -      -       -      +
    701B  ARG*     1.3    63.6    +      -       -      +
    703B  LEU*     3.4    13.1    +      -       -      +
    704B  THR*     2.8    28.4    +      -       -      -
    724B  ALA*     5.0     1.1    -      -       -      +
    727B  ALA*     4.1     9.2    -      -       +      +
    728B  ALA*     3.8    32.7    -      -       -      +
    731B  ALA*     4.7     2.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 701 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    405B  TYR*     3.3    54.8    -      -       -      +
    479B  GLU*     2.9    34.9    +      -       -      -
    656B  LEU*     3.5    18.8    -      -       +      +
    660B  GLN*     3.2    23.2    +      -       -      +
    697B  LEU*     3.0    33.0    +      -       -      +
    698B  GLU*     3.6    28.1    -      -       -      +
    699B  SER      3.2     0.4    -      -       -      -
    700B  ALA*     1.3    74.3    -      -       -      +
    702B  LEU*     1.3    60.5    +      -       +      +
    704B  THR*     3.2     2.4    +      -       -      -
    705B  TRP*     2.9    56.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 702 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    698B  GLU*     3.1    17.0    +      -       +      +
    699B  SER*     3.3    11.0    +      -       -      +
    700B  ALA      3.3     0.2    -      -       -      -
    701B  ARG*     1.3    81.7    -      -       +      +
    703B  LEU*     1.3    57.8    +      -       +      +
    705B  TRP*     3.9    18.3    -      -       +      +
    706B  ARG*     3.0    29.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 703 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    699B  SER*     3.4    17.8    +      -       -      +
    700B  ALA*     3.7     7.9    -      -       -      +
    701B  ARG      3.3     0.4    -      -       -      -
    702B  LEU*     1.3    77.5    -      -       +      +
    704B  THR*     1.3    61.8    +      -       -      +
    706B  ARG*     3.3    38.0    +      -       -      +
    707B  ALA*     3.1    22.3    +      -       -      +
    720B  GLU      4.3     2.8    -      -       -      +
    723B  MET*     4.3    18.6    -      -       +      +
    724B  ALA*     3.9    14.9    -      -       +      +
    727B  ALA*     3.6    29.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 704 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    475B  SER*     3.4    23.6    -      -       -      +
    649B  ILE*     4.0     9.1    -      -       +      +
    652B  ALA*     3.6    26.9    -      -       +      +
    653B  SER*     3.6    13.2    -      -       -      +
    656B  LEU*     3.6    17.5    -      -       +      +
    700B  ALA      2.8    18.9    +      -       -      -
    701B  ARG      3.2     8.0    +      -       -      -
    703B  LEU*     1.3    74.0    -      -       -      +
    705B  TRP*     1.3    65.6    +      -       +      +
    707B  ALA*     3.3     4.5    +      -       -      +
    708B  ALA*     3.1    21.0    +      -       -      +
    724B  ALA*     3.6    12.4    +      -       -      +
    728B  ALA*     4.6     0.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 705 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    405B  TYR*     3.6    37.0    -      +       -      -
    407B  SER*     3.3    26.2    -      -       -      -
    408B  VAL*     5.8     2.7    -      -       +      -
    410B  LEU*     3.5    26.0    -      -       +      -
    472B  LEU*     4.0    15.0    -      -       +      +
    475B  SER*     3.7    21.4    +      -       -      -
    476B  ILE*     3.7    26.6    -      -       +      +
    479B  GLU*     4.7     5.9    +      -       -      -
    656B  LEU*     5.3     0.8    -      -       +      +
    701B  ARG*     2.9    41.5    +      -       +      +
    702B  LEU*     3.9    18.2    -      -       +      +
    704B  THR*     1.3    77.4    -      -       +      +
    706B  ARG*     1.3    57.5    +      -       -      +
    708B  ALA*     3.3     6.4    +      -       -      +
    709B  MET*     2.9    48.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 706 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    702B  LEU      3.0    18.9    +      -       -      +
    703B  LEU*     3.4    27.4    +      -       -      +
    704B  THR      3.2     0.2    -      -       -      -
    705B  TRP*     1.3    77.5    -      -       -      +
    707B  ALA*     1.3    63.0    +      -       -      +
    709B  MET*     3.2    14.8    +      -       +      +
    710B  LEU*     2.9    41.1    +      -       +      +
    719B  LYS*     5.4     4.9    -      -       -      +
    720B  GLU*     3.7    31.0    +      -       -      +
    723B  MET*     3.5    29.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 707 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    649B  ILE*     3.7    25.3    -      -       +      +
    703B  LEU      3.1     6.1    +      -       -      +
    704B  THR      3.6     7.9    -      -       -      +
    706B  ARG*     1.3    77.9    -      -       -      +
    708B  ALA*     1.3    61.4    +      -       -      +
    710B  LEU*     3.4     5.5    +      -       -      +
    711B  LYS*     3.0    23.7    +      -       -      +
    717B  PHE*     4.0     5.0    -      -       -      +
    720B  GLU*     3.8    33.8    -      -       -      +
    721B  SER*     3.9     7.6    -      -       -      +
    724B  ALA*     4.7     2.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 708 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    471B  TYR*     3.6    31.6    -      -       +      +
    472B  LEU*     3.8     8.3    -      -       -      -
    475B  SER*     4.5     3.8    -      -       -      -
    649B  ILE*     4.0    17.2    -      -       +      +
    704B  THR      3.1    13.6    +      -       -      +
    705B  TRP*     3.5    11.9    -      -       -      +
    707B  ALA*     1.3    77.4    -      -       -      +
    709B  MET*     1.3    56.7    +      -       -      +
    711B  LYS*     3.2     4.9    +      -       -      +
    712B  ASP*     2.9    32.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with MET 709 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    472B  LEU*     4.0    25.1    -      -       +      -
    705B  TRP*     2.9    44.1    +      -       +      +
    706B  ARG*     3.7    10.3    -      -       -      +
    708B  ALA*     1.3    72.7    -      -       -      +
    710B  LEU*     1.3    62.9    +      -       +      +
    712B  ASP*     3.2     8.0    +      -       +      +
    713B  ASN*     2.9    38.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 710 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    706B  ARG*     2.9    30.1    +      -       +      +
    707B  ALA      3.7     4.0    -      -       -      +
    709B  MET*     1.3    74.5    -      -       +      +
    711B  LYS*     1.3    66.6    +      -       -      +
    713B  ASN*     3.1     5.7    +      -       +      +
    714B  LYS      3.0     5.2    +      -       -      -
    715B  LYS*     2.9    46.2    +      -       +      +
    716B  PRO      3.8    11.0    -      -       -      +
    717B  PHE*     3.9     8.5    -      -       +      -
    720B  GLU*     3.4    46.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 711 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    459B  ASP*     2.8    30.3    +      -       -      -
    471B  TYR*     4.0    23.7    -      -       +      -
    504B  LEU*     6.2     0.2    -      -       -      +
    646B  MET*     3.8    27.7    -      -       +      -
    649B  ILE*     4.4     2.2    -      -       +      -
    707B  ALA      3.0    14.3    +      -       -      +
    708B  ALA*     3.3    12.3    -      -       -      +
    710B  LEU*     1.3    76.0    -      -       -      +
    712B  ASP*     1.3    67.2    +      -       -      +
    714B  LYS*     3.1    37.7    +      -       -      +
    715B  LYS      4.6     0.4    -      -       -      -
    717B  PHE*     3.5    40.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 712 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    459B  ASP*     5.0     1.9    -      -       -      +
    470B  ASP*     3.2    34.3    -      -       +      +
    471B  TYR*     2.9    24.0    +      -       -      +
    472B  LEU*     3.2    21.3    +      -       -      +
    708B  ALA      2.9    14.8    +      -       -      +
    709B  MET*     3.6    10.2    -      -       -      +
    711B  LYS*     1.3    82.1    +      -       -      +
    713B  ASN*     1.3    63.6    +      -       -      +
    714B  LYS*     3.2    17.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 713 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    709B  MET*     2.9    22.5    +      -       -      +
    710B  LEU*     3.1     7.5    +      -       +      +
    712B  ASP*     1.3    82.8    +      -       -      +
    714B  LYS*     1.3    72.1    +      -       -      +
    715B  LYS*     3.3    26.0    -      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il