Contacts of the helix formed by residues 199 - 226 (chain M) in PDB entry 1K6L
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 199 (chain M).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196M LEU* 2.9 22.6 + - + +
197M PHE 4.5 2.8 - - - +
198M TYR* 1.3 74.5 - - - +
200M PRO* 1.3 70.6 - - - +
201M PHE* 3.1 24.9 + - - +
202M HIS* 3.1 20.2 + - + +
203M GLY* 3.1 9.7 + - - -
283M GLY* 2.6 34.6 + - - -
284M ILE* 5.0 0.2 - - - +
287M SER* 3.1 2.4 + - - -
294M TRP* 2.9 42.4 - - + +
502M BCL 5.4 0.4 - - - -
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Residues in contact with PRO 200 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17H ILE* 4.2 23.6 - - + -
151L TRP* 6.2 4.5 - - + -
198M TYR 3.3 11.2 - - - +
199M ASN* 1.3 88.5 - - - +
201M PHE* 1.3 66.1 + - + +
203M GLY* 3.4 2.3 + - - +
204M LEU* 3.0 32.8 + - - +
294M TRP* 3.8 17.3 - - + -
297M TRP* 4.0 22.7 - - + -
701M LDA 3.9 24.2 - - - +
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Residues in contact with PHE 201 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13H ALA* 4.6 2.5 - - + -
16H ALA* 3.9 8.5 - - + -
17H ILE* 3.6 47.6 - - + -
20H PHE* 4.2 19.3 - + + -
199M ASN* 3.1 8.2 + - - +
200M PRO* 1.3 82.6 - - + +
202M HIS* 1.3 55.2 + - - +
204M LEU* 3.0 3.1 + - + +
205M SER* 2.7 38.0 + - - -
279M THR* 3.3 32.0 - - + +
282M ILE* 3.8 19.5 - - + -
283M GLY* 3.2 33.2 - - - +
286M LEU* 3.8 25.6 - - + -
294M TRP* 5.3 1.6 - + - -
502M BCL 4.9 0.7 - - - -
800M CDL 6.2 0.2 - - + -
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Residues in contact with HIS 202 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196M LEU* 3.3 26.6 + - + +
197M PHE* 3.7 19.2 - + - -
199M ASN* 3.1 20.2 + - + +
201M PHE* 1.3 78.3 - - - +
203M GLY* 1.3 63.7 + - - +
205M SER* 3.4 3.4 + - - -
206M ILE* 3.0 48.9 + - + +
502M BCL 2.2 90.8 + + + -
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Residues in contact with GLY 203 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304L BCL 3.3 38.8 - - - +
197M PHE* 5.7 3.8 - - - -
199M ASN 3.1 8.6 + - - -
200M PRO* 3.4 3.6 + - - -
201M PHE 3.1 0.6 - - - -
202M HIS* 1.3 81.5 + - - +
204M LEU* 1.3 62.8 + - - +
206M ILE* 3.5 3.5 + - - +
207M ALA* 3.3 19.1 + - - +
701M LDA 4.2 6.4 - - - +
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Residues in contact with LEU 204 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17H ILE* 3.7 26.5 - - + -
20H PHE* 4.1 25.1 - - + -
21H TRP* 3.9 25.4 - - + +
24H LEU* 5.1 0.7 - - + -
200M PRO 3.0 18.0 + - - +
201M PHE* 3.3 2.5 - - + +
203M GLY* 1.3 75.1 - - - +
205M SER* 1.3 60.3 + - - +
207M ALA* 3.0 24.9 + - - +
208M PHE* 3.1 25.5 + - + -
279M THR* 3.3 23.6 - - + -
701M LDA 3.9 31.9 - - + -
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Residues in contact with SER 205 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201M PHE 2.7 19.6 + - - -
202M HIS* 3.5 9.6 - - - -
204M LEU* 1.3 75.4 - - - +
206M ILE* 1.3 59.9 + - - +
208M PHE* 3.4 6.5 + - - +
209M LEU* 3.1 22.7 + - - +
276M VAL* 2.7 31.6 + - - +
279M THR* 4.0 4.7 - - - +
280M GLY* 3.7 15.7 - - - -
502M BCL 3.5 23.8 - - - +
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Residues in contact with ILE 206 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304L BCL 3.2 45.8 - - + +
197M PHE* 4.3 0.4 - - + -
202M HIS* 3.0 44.2 + - + +
203M GLY 3.7 4.3 - - - +
204M LEU 3.2 0.2 - - - -
205M SER* 1.3 74.4 - - - +
207M ALA* 1.3 59.2 + - - +
209M LEU* 3.2 2.2 + - - +
210M TYR* 2.8 71.5 + - + -
502M BCL 3.6 34.1 - - + -
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Residues in contact with ALA 207 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304L BCL 3.0 41.3 - - + +
203M GLY 3.3 10.3 + - - +
204M LEU* 3.0 15.6 + - + +
206M ILE* 1.3 80.7 - - - +
208M PHE* 1.3 54.3 + - + +
211M GLY* 2.9 29.8 + - - -
272M MET* 4.8 0.2 - - - +
701M LDA 4.0 28.5 - - + -
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Residues in contact with PHE 208 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20H PHE* 4.2 6.7 - + - -
24H LEU* 4.1 17.3 - - + -
204M LEU* 3.1 32.8 + - + -
205M SER* 3.4 3.3 + - - +
207M ALA* 1.3 75.4 - - + +
209M LEU* 1.3 60.1 + - - +
211M GLY 3.7 0.4 - - - -
212M SER* 2.8 32.9 + - - -
272M MET* 3.5 27.7 - - - +
275M LEU* 3.6 48.7 - - + -
276M VAL* 3.4 18.3 - - + +
279M THR* 3.8 15.7 - - - -
701M LDA 3.3 37.0 - - + -
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Residues in contact with LEU 209 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180L PHE* 4.0 44.1 - - + +
181L PHE* 4.3 11.7 - - + -
184L ALA* 4.3 8.7 - - + -
302L BCL 4.6 5.2 - - + -
205M SER 3.1 14.3 + - - +
206M ILE 3.2 8.3 + - - +
208M PHE* 1.3 74.0 - - - +
210M TYR* 1.3 69.4 + - + +
211M GLY 3.0 0.9 - - - -
212M SER* 3.1 14.2 + - - -
213M ALA* 3.3 12.0 + - - +
276M VAL* 3.4 25.1 - - + +
502M BCL 4.0 46.2 - - + +
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Residues in contact with TYR 210 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180L PHE* 4.6 11.7 - + - -
302L BCL 3.5 27.7 - + + +
304L BCL 3.4 69.9 - + + +
402L BPH 3.5 37.5 - - + +
206M ILE* 2.8 34.7 + - + +
207M ALA 3.7 4.3 - - - +
209M LEU* 1.3 82.0 - - + +
211M GLY* 1.3 58.0 + - - +
213M ALA* 3.3 9.4 + - - +
214M LEU* 3.0 24.4 + - - +
502M BCL 3.5 31.4 + - + +
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Residues in contact with GLY 211 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304L BCL 3.9 9.6 - - - -
207M ALA 2.9 19.1 + - - -
208M PHE 3.8 1.6 - - - -
209M LEU 3.0 0.2 - - - -
210M TYR* 1.3 75.7 - - - +
212M SER* 1.3 54.9 + - - +
213M ALA 3.1 0.2 - - - -
214M LEU* 3.0 10.5 + - - +
215M LEU* 2.7 37.8 + - - +
272M MET* 3.9 20.2 - - - +
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Residues in contact with SER 212 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180L PHE 5.7 0.2 - - - -
183L ASN* 3.2 17.1 + - - -
184L ALA* 4.1 15.4 - - - +
187L LEU* 3.6 18.0 - - - +
208M PHE 2.8 22.6 + - - -
209M LEU* 3.1 7.4 + - - -
211M GLY* 1.3 77.0 - - - +
213M ALA* 1.3 58.1 + - - +
216M PHE* 2.8 28.1 + - - +
272M MET* 3.5 16.7 + - - +
273M ALA* 3.5 14.6 - - - -
276M VAL* 4.1 2.8 - - - +
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Residues in contact with ALA 213 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180L PHE* 3.8 21.3 - - + -
183L ASN* 3.4 14.1 - - - +
237L SER* 3.2 15.5 + - - +
240L ALA* 5.5 1.1 - - + -
402L BPH 3.6 22.2 - - + -
209M LEU 3.3 4.4 + - - +
210M TYR 3.4 9.9 - - - +
211M GLY 3.1 0.2 - - - -
212M SER* 1.3 81.0 - - - +
214M LEU* 1.3 53.6 + - - +
217M ALA* 2.8 36.0 + - - +
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Residues in contact with LEU 214 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304L BCL 3.6 40.8 - - + -
402L BPH 3.0 72.4 - - + +
210M TYR 3.0 14.5 + - - +
211M GLY* 3.3 10.5 - - - +
213M ALA* 1.3 76.3 - - - +
215M LEU* 1.3 57.6 + - + +
217M ALA* 3.4 2.6 - - - +
218M MET* 3.0 49.4 + - - +
272M MET* 6.5 0.2 - - + -
503M U10 4.5 13.5 - - + -
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Residues in contact with LEU 215 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187L LEU* 4.4 8.5 - - + -
211M GLY 2.7 20.2 + - - +
212M SER* 3.9 2.7 - - - +
214M LEU* 1.3 72.2 - - - +
216M PHE* 1.3 58.3 + - - +
217M ALA 3.0 1.3 - - - -
218M MET* 2.9 8.6 + - + +
219M HIS* 2.6 36.5 + - + +
265M ILE* 4.1 22.7 - - + +
268M TRP* 3.9 11.7 - - + +
269M ALA* 3.5 40.4 - - + +
272M MET* 4.4 15.5 - - + -
503M U10 4.4 33.9 - - + -
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Residues in contact with PHE 216 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183L ASN* 3.5 22.9 - - - +
186L ALA* 3.5 12.8 - - + -
187L LEU* 3.4 52.4 - - + +
190L HIS* 4.1 19.7 - + + -
229L ILE* 3.4 24.9 - - + -
230L HIS* 4.7 5.2 - + - -
233L GLY* 3.6 22.7 - - - -
234L LEU 4.3 2.3 + - - -
237L SER* 3.8 3.1 - - - +
212M SER 2.8 21.8 + - - +
215M LEU* 1.3 71.6 - - - +
217M ALA* 1.3 63.7 + - - +
219M HIS* 4.5 18.8 - + + -
220M GLY* 2.9 29.0 + - - -
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Residues in contact with ALA 217 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120L ALA* 4.6 8.6 - - + +
234L LEU* 4.0 8.4 - - - +
237L SER* 3.4 16.9 + - - -
238L LEU* 5.0 1.6 - - + -
402L BPH 3.9 29.6 - - + -
213M ALA 2.8 21.5 + - - +
214M LEU 3.4 5.6 - - - +
216M PHE* 1.3 76.9 - - - +
218M MET* 1.3 57.1 + - - +
221M ALA* 3.0 33.3 + - - +
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Residues in contact with MET 218 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117L ILE* 4.2 1.2 - - - +
402L BPH 3.6 38.6 - - + +
214M LEU* 3.0 33.9 + - + +
215M LEU* 2.9 12.3 + - + +
217M ALA* 1.3 75.3 - - - +
219M HIS* 1.3 57.8 + - - +
221M ALA* 4.0 2.1 - - - +
222M THR* 2.5 35.2 + - - -
252M TRP* 3.6 33.7 - - + -
256M MET* 4.5 1.3 - - + -
503M U10 3.4 59.7 - - + -
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Residues in contact with HIS 219 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187L LEU* 5.6 4.5 - - + -
190L HIS* 3.7 17.0 - + - -
230L HIS* 3.2 8.6 + + - -
215M LEU* 2.6 24.2 + - + +
216M PHE* 4.2 10.3 - + - +
218M MET* 1.3 71.2 - - - +
220M GLY* 1.3 65.9 + - - +
222M THR* 3.1 2.6 + - - -
223M ILE* 2.9 37.0 + - + +
234M GLU* 3.2 11.4 - - - -
265M ILE* 3.8 24.5 - - + +
266M HIS* 3.0 11.1 + + - -
269M ALA* 5.8 4.0 - - + -
500M FE 2.1 32.2 - - - -
503M U10 3.2 26.4 + - + +
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Residues in contact with GLY 220 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
230L HIS* 3.7 32.5 - - - +
234L LEU* 4.6 5.2 - - - -
216M PHE* 2.9 20.1 + - - -
217M ALA 4.1 0.2 - - - -
219M HIS* 1.3 80.5 - - - +
221M ALA* 1.3 61.5 + - - +
223M ILE* 3.3 1.9 + - - +
224M LEU* 3.1 26.8 + - - +
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Residues in contact with ALA 221 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116L HIS* 3.3 42.4 - - + +
117L ILE* 3.5 14.8 - - + +
120L ALA* 4.6 1.8 - - + -
234L LEU* 3.9 15.8 - - + +
217M ALA 3.0 19.6 + - - +
220M GLY* 1.3 73.8 - - - +
222M THR* 1.3 57.3 + - - +
224M LEU* 3.5 2.4 + - - -
225M ALA* 2.9 30.1 + - - +
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Residues in contact with THR 222 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113L ILE* 6.5 0.9 - - + -
117L ILE* 3.1 16.8 - - + +
218M MET 2.5 23.5 + - - -
219M HIS 3.5 3.8 - - - -
221M ALA* 1.3 75.5 - - - +
223M ILE* 1.3 63.0 + - - +
225M ALA* 2.8 21.7 + - + +
226M VAL* 3.0 16.7 + - + +
248M ALA* 4.0 31.2 - - + -
251M PHE* 5.7 1.1 - - + -
252M TRP* 3.1 27.6 + - + +
503M U10 3.5 17.4 + - + +
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Residues in contact with ILE 223 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227L LEU* 5.7 1.8 - - + -
230L HIS* 3.6 31.6 - - + +
219M HIS* 2.9 41.6 + - + +
220M GLY 3.9 1.1 - - - +
222M THR* 1.3 77.1 - - + +
224M LEU* 1.3 57.4 + - - +
226M VAL* 3.3 14.5 + - + +
227M SER* 2.9 28.9 + - - -
231M GLY* 4.3 7.1 - - - +
232M GLU* 3.8 27.6 - - + +
234M GLU* 3.6 13.0 - - - +
248M ALA* 5.7 0.7 - - + -
262M MET* 4.0 10.8 - - - -
503M U10 4.0 16.6 - - - -
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Residues in contact with LEU 224 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116L HIS* 3.6 26.0 + - + +
227L LEU* 4.1 16.8 - - + -
230L HIS* 4.7 5.2 - - + +
231L ARG* 3.9 23.1 - - + +
234L LEU* 3.4 24.2 - - + -
4M GLN 4.7 1.8 - - - +
5M ASN* 3.4 25.0 - - + +
6M ILE* 3.3 31.6 - - + -
220M GLY 3.1 16.0 + - - +
221M ALA 3.7 4.3 - - - +
223M ILE* 1.3 75.6 - - - +
225M ALA* 1.3 62.8 + - - +
227M SER* 2.8 20.9 + - - -
228M ARG* 4.6 1.7 + - - -
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Residues in contact with ALA 225 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113L ILE* 3.5 17.5 - - + +
114L GLY 3.1 40.0 + - - +
116L HIS* 3.6 13.9 - - + +
117L ILE* 4.6 6.5 - - + -
221M ALA 2.9 15.8 + - - +
222M THR* 2.8 15.8 + - + +
224M LEU* 1.3 76.6 - - - +
226M VAL* 1.3 58.9 + - + +
228M ARG* 3.5 14.2 + - - -
----------------------------------------------------------
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Residues in contact with VAL 226 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113L ILE* 3.4 30.3 - - + -
222M THR* 3.0 21.6 + - + +
223M ILE* 3.7 17.7 - - + +
225M ALA* 1.3 80.3 - - + +
227M SER* 1.3 58.9 + - - +
228M ARG 3.0 2.5 - - - +
229M PHE* 2.9 35.8 + - + +
231M GLY* 3.3 21.3 + - - -
244M ALA* 4.1 24.7 - - + +
247M ARG* 4.2 5.6 - - + -
248M ALA* 4.4 13.2 - - + +
262M MET* 6.3 0.9 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il