Contacts of the helix formed by residues 108 - 152 (chain D) in PDB entry 1LWU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 108 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104D VAL 3.4 9.0 + - - +
105D LEU* 3.2 16.7 + - + +
107D GLU* 1.3 79.4 - - - +
109D GLU* 1.3 54.3 + - - +
111D ARG* 2.8 12.2 + - - +
112D ILE* 2.6 39.9 + - + +
167E ILE* 3.5 36.1 - - + -
85F VAL* 5.1 2.5 - - + +
88F ILE* 3.9 21.8 - - + +
89F LEU* 3.2 39.5 - - + -
92F VAL* 4.3 17.0 - - + -
97G LEU* 4.5 6.3 - - + -
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Residues in contact with GLU 109 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105D LEU 3.7 8.0 + - - +
106D ARG* 4.9 9.9 - - - +
108D LEU* 1.3 74.3 - - - +
110D ARG* 1.3 57.1 + - - +
111D ARG 2.8 5.7 + - - -
112D ILE* 4.0 9.4 - - + +
113D ILE* 2.6 41.7 + - + +
163E ALA 4.9 0.2 - - - +
166E GLU* 3.3 37.9 - - - +
167E ILE* 4.0 24.1 - - + +
170E ARG* 5.5 14.1 - - + +
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Residues in contact with ARG 110 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106D ARG 3.8 14.8 + - - +
107D GLU* 3.1 36.6 - - - +
108D LEU 3.2 0.6 - - - -
109D GLU* 1.3 77.3 - - - +
111D ARG* 1.3 58.7 + - + +
113D ILE* 4.0 11.0 - - - +
114D HIS* 4.0 12.8 - - - +
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Residues in contact with ARG 111 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107D GLU* 3.5 23.8 + - - +
108D LEU* 3.2 17.2 - - - +
109D GLU 2.8 0.6 - - - -
110D ARG* 1.3 82.1 - - + +
112D ILE* 1.3 60.6 + - - +
113D ILE 3.6 0.2 - - - -
114D HIS* 3.9 7.1 + - - +
115D LEU* 3.6 16.8 + - - +
89F LEU* 6.4 0.6 - - - +
92F VAL* 3.9 14.8 - - + +
93F ARG* 5.7 5.3 - - - +
96F GLU* 2.8 48.5 + - - +
96G GLU* 3.7 43.6 + - - +
97G LEU* 4.0 20.6 - - - +
100G ARG* 5.4 0.4 - - - +
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Residues in contact with ILE 112 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108D LEU* 2.6 24.5 + - + +
109D GLU* 4.2 5.6 - - + +
111D ARG* 1.3 72.1 - - - +
113D ILE* 1.3 59.4 + - - +
114D HIS 2.9 4.9 - - - -
115D LEU* 2.9 30.8 + - + +
116D GLN* 3.3 7.5 + - + +
167E ILE* 4.2 18.8 - - + -
170E ARG* 4.0 28.0 - - + -
171E TYR* 3.5 30.1 - - + +
174E VAL* 4.4 9.9 - - + -
88F ILE 4.8 0.4 - - - +
92F VAL* 3.4 39.0 - - + -
95F LEU* 6.4 0.2 - - + -
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Residues in contact with ILE 113 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109D GLU* 2.6 36.0 + - + +
110D ARG* 4.0 10.1 - - - +
112D ILE* 1.3 74.6 - - - +
114D HIS* 1.3 59.0 + - + +
116D GLN* 3.2 23.1 - - - +
117D ARG* 3.4 6.4 + - - +
190D GLU 3.9 9.2 - - - +
191D GLU* 4.5 16.2 - - - +
193D VAL* 5.8 7.2 - - + -
170E ARG* 3.1 41.5 - - - +
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Residues in contact with HIS 114 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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110D ARG 4.0 13.5 - - - +
111D ARG* 3.9 10.3 - - - +
112D ILE 2.9 1.0 - - - -
113D ILE* 1.3 81.6 - - + +
115D LEU* 1.3 56.6 + - - +
116D GLN 2.6 15.5 + - - -
117D ARG* 2.7 56.2 + - + +
118D ARG* 2.8 39.9 + - + +
96F GLU* 6.2 0.2 - - - -
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Residues in contact with LEU 115 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111D ARG 3.6 8.1 + - - +
112D ILE* 2.9 20.0 + - + +
114D HIS* 1.3 80.0 - - - +
116D GLN* 1.3 49.8 + - - +
118D ARG* 3.5 21.5 - - + +
119D ILE* 2.8 41.0 + - - +
174E VAL* 4.1 10.5 - - + -
178E ILE* 3.5 16.6 - - + -
92F VAL* 4.3 19.3 - - + -
95F LEU* 3.3 59.7 - - + +
96F GLU* 4.2 11.7 - - + +
99F GLY* 5.1 0.4 - - - -
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Residues in contact with GLN 116 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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112D ILE 3.5 11.7 - - - +
113D ILE* 3.2 9.2 - - + +
114D HIS 2.6 0.6 + - - -
115D LEU* 1.3 75.0 - - - +
117D ARG* 1.3 54.6 + - - +
118D ARG 2.9 4.0 - - - -
119D ILE* 2.8 10.1 + - - +
120D ASN* 2.7 39.6 + - - +
186D PHE* 5.3 2.5 - - - -
188D ARG* 3.6 42.6 + - + +
190D GLU* 4.3 4.6 + - - -
191D GLU* 4.9 3.1 - - + -
170E ARG* 3.3 35.1 + - - +
173E GLU* 4.5 5.9 + - - +
174E VAL* 2.9 38.7 - - - +
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Residues in contact with ARG 117 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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113D ILE 3.4 7.2 + - - +
114D HIS* 2.7 42.5 + - - +
116D GLN* 1.3 75.1 - - - +
118D ARG* 1.3 59.3 + - - +
120D ASN* 3.7 12.1 - - + +
121D MET* 3.3 44.2 + - - +
191D GLU* 3.4 25.3 - - + +
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Residues in contact with ARG 118 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114D HIS* 2.8 34.3 + - + +
115D LEU* 3.5 20.6 - - + +
117D ARG* 1.3 76.4 - - - +
119D ILE* 1.3 65.1 + - + +
120D ASN 3.2 1.3 - - - -
121D MET* 3.2 9.8 + - - +
122D GLN* 2.9 43.6 + - - +
96F GLU* 4.3 6.7 + - - +
99F GLY* 4.2 15.0 - - - -
100F VAL* 3.1 34.5 - - - +
103F ASP* 3.2 24.8 + - - +
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Residues in contact with ILE 119 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115D LEU 2.8 26.9 + - - +
116D GLN* 2.8 15.3 + - - +
118D ARG* 1.3 77.0 - - + +
120D ASN* 1.3 68.7 + - - +
122D GLN* 3.0 24.0 + - - +
123D LEU* 2.9 41.6 + - + +
186D PHE* 4.4 9.4 - - + -
188D ARG* 6.2 0.7 - - + -
174E VAL* 4.5 2.9 - - + -
177E ARG* 4.2 19.5 - - + -
178E ILE* 3.1 42.8 - - + -
182E VAL* 4.8 5.6 - - + -
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Residues in contact with ASN 120 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116D GLN 2.7 20.4 + - - +
117D ARG* 3.7 9.2 - - + +
119D ILE* 1.3 78.7 - - - +
121D MET* 1.3 63.9 + - + +
123D LEU* 3.0 17.5 + - - +
124D GLN* 3.0 19.0 + - + +
186D PHE* 3.6 3.5 - - - +
187D GLU* 3.2 21.0 - - + +
188D ARG* 2.7 41.3 + - - +
191D GLU* 2.4 37.3 + - - +
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Residues in contact with MET 121 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117D ARG* 3.3 37.8 + - - +
118D ARG* 3.2 12.4 + - - +
120D ASN* 1.3 78.1 - - + +
122D GLN* 1.3 56.3 + - + +
124D GLN* 2.8 39.5 + - + +
125D GLN* 3.1 30.0 + - - +
103F ASP* 5.7 2.0 - - - +
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Residues in contact with GLN 122 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118D ARG* 2.9 25.3 + - - +
119D ILE* 3.0 21.5 + - - +
121D MET* 1.3 76.4 - - - +
123D LEU* 1.3 58.6 + - - +
125D GLN* 4.1 1.3 - - - +
126D LEU* 2.9 34.0 + - - +
182E VAL* 3.4 37.3 - - + +
99F GLY* 2.9 31.9 - - - +
102F HIS* 3.1 14.9 + - - +
103F ASP* 3.4 19.8 - - - +
106F ILE* 3.7 18.8 - - + +
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Residues in contact with LEU 123 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119D ILE* 2.9 23.8 + - + +
120D ASN* 3.0 6.7 + - - +
122D GLN* 1.3 74.6 - - - +
124D GLN* 1.3 61.9 + - - +
126D LEU* 3.9 14.8 - - + -
127D THR* 2.6 30.8 + - - -
184D LEU* 3.9 35.4 - - + -
185D LYS* 4.3 6.7 + - - +
186D PHE* 3.2 44.6 - - + +
181E THR* 4.3 8.7 - - + -
182E VAL* 3.7 26.7 - - + -
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Residues in contact with GLN 124 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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120D ASN* 3.0 25.1 + - + +
121D MET* 2.8 22.3 + - + +
123D LEU* 1.3 81.8 + - - +
125D GLN* 1.3 63.4 + - + +
127D THR* 3.7 3.6 - - - -
128D LEU* 3.3 21.7 + - - +
187D GLU* 2.4 42.1 + - - +
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Residues in contact with GLN 125 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121D MET* 3.1 45.1 + - - +
122D GLN* 4.2 3.9 - - - +
124D GLN* 1.3 82.8 - - + +
126D LEU* 1.3 54.6 + - - +
128D LEU* 3.3 9.6 + - + +
129D LEU* 2.7 40.0 + - + +
103F ASP* 5.1 6.7 + - - +
106F ILE* 2.9 43.1 - - + +
107F GLN* 3.0 14.5 + - - -
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Residues in contact with LEU 126 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122D GLN 2.9 27.3 + - - +
123D LEU* 3.9 8.5 - - + -
124D GLN 3.4 0.2 - - - -
125D GLN* 1.3 76.7 - - - +
127D THR* 1.3 58.1 + - - +
129D LEU* 4.1 10.3 - - + -
130D GLN* 3.0 28.2 + - - +
184D LEU* 3.2 24.7 - - + +
182E VAL* 3.9 35.7 - - + -
185E SER* 4.2 11.4 - - - -
186E LEU* 3.8 20.9 - - + -
189E MET* 3.7 32.3 - - - +
106F ILE* 4.2 8.1 - - + -
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Residues in contact with THR 127 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123D LEU 2.6 23.4 + - - -
124D GLN* 3.7 4.9 - - - -
125D GLN 3.2 0.4 - - - -
126D LEU* 1.3 73.8 - - - +
128D LEU* 1.3 67.5 + - - +
130D GLN* 3.2 26.9 - - - +
131D HIS* 3.2 9.5 + - - +
184D LEU* 3.2 21.9 - - + +
185D LYS* 3.9 12.8 + - + +
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Residues in contact with LEU 128 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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124D GLN 3.3 13.4 + - - +
125D GLN* 3.7 8.5 - - + +
127D THR* 1.3 75.4 - - - +
129D LEU* 1.3 69.5 + - + +
130D GLN 3.0 4.9 - - - -
131D HIS* 3.2 8.1 + - + +
132D ASN* 3.1 55.1 + - - +
110F SER* 5.7 3.1 - - - +
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Residues in contact with LEU 129 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125D GLN* 2.7 22.4 + - + +
126D LEU* 3.7 13.5 - - + +
128D LEU* 1.3 80.1 - - + +
130D GLN* 1.3 58.9 + - - +
132D ASN* 3.9 6.2 - - + +
133D ILE* 3.2 36.0 + - + +
189E MET* 4.0 13.5 - - + -
193E LEU* 5.1 2.7 - - + -
106F ILE* 4.3 14.4 - - + +
109F LEU* 3.5 41.3 - - + +
110F SER* 3.9 29.4 - - - +
113F TRP* 4.6 14.1 - - + -
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Residues in contact with GLN 130 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126D LEU 3.0 13.4 + - - +
127D THR* 3.2 22.4 - - - +
128D LEU 3.0 0.2 - - - -
129D LEU* 1.3 78.0 - - - +
131D HIS* 1.3 61.0 + - - +
132D ASN 3.1 1.6 - - - -
133D ILE* 3.5 4.0 + - - +
134D LYS* 3.0 27.5 + - + +
178D ALA 3.7 15.5 + - - +
179D SER* 2.8 38.3 + - - +
181D ILE 3.9 2.2 + - - -
182D ALA* 3.1 27.1 - - - +
184D LEU* 4.5 8.4 - - + +
189E MET* 3.7 11.4 - - + -
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Residues in contact with HIS 131 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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127D THR 3.2 8.5 + - - +
128D LEU* 3.2 12.0 + - + +
130D GLN* 1.3 82.5 - - - +
132D ASN* 1.3 65.8 + - - +
134D LYS* 3.1 30.0 + - + +
135D THR* 3.0 31.3 + - + +
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Residues in contact with ASN 132 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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128D LEU* 3.1 43.4 + - - +
129D LEU* 4.0 9.5 - - + +
130D GLN 3.1 0.8 - - - -
131D HIS* 1.3 86.2 + - - +
133D ILE* 1.3 65.5 + - - +
134D LYS 3.0 0.9 - - - -
135D THR* 3.0 19.3 + - - -
136D GLN* 3.1 15.4 + - - +
113F TRP* 3.4 47.6 + - + +
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Residues in contact with ILE 133 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129D LEU* 3.2 21.6 + - + +
130D GLN* 4.0 4.7 - - - +
132D ASN* 1.3 76.8 - - - +
134D LYS* 1.3 64.5 + - - +
136D GLN* 4.3 2.9 - - - -
137D VAL* 3.0 37.4 + - + +
175D GLU* 5.6 3.8 - - + +
178D ALA* 4.9 11.4 - - + +
189E MET* 3.9 37.7 - - + +
192E VAL* 3.5 27.8 - - + -
193E LEU* 4.0 35.0 - - + -
196E LEU* 5.1 1.1 - - + -
113F TRP* 4.2 7.6 - - + +
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Residues in contact with LYS 134 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130D GLN 3.0 15.9 + - - +
131D HIS* 3.1 30.7 + - + +
133D ILE* 1.3 81.6 - - - +
135D THR* 1.3 68.3 + - + +
136D GLN 3.4 2.8 + - - -
137D VAL* 4.2 3.9 - - - +
138D SER* 3.6 18.8 + - - -
175D GLU* 6.0 4.2 - - + +
179D SER* 5.2 17.5 - - - -
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Residues in contact with THR 135 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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131D HIS* 3.0 35.1 + - + +
132D ASN* 3.0 13.9 + - - -
134D LYS* 1.3 88.0 - - + +
136D GLN* 1.3 56.2 + - - +
137D VAL 3.8 0.2 - - - -
138D SER* 4.5 8.1 - - - -
139D GLN* 3.9 20.3 - - - +
113F TRP* 5.0 4.5 - - - -
117F GLN* 4.5 2.9 + - - +
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Residues in contact with GLN 136 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132D ASN 3.1 14.7 + - - +
133D ILE* 3.8 3.8 - - - +
135D THR* 1.3 76.2 - - - +
137D VAL* 1.3 65.3 + - - +
138D SER 3.2 1.3 - - - -
139D GLN* 3.8 6.3 - - - -
140D ILE* 2.9 47.5 + - + +
193E LEU* 3.6 3.1 - - - +
196E LEU* 3.1 23.8 - - + +
113F TRP* 2.9 53.3 + - + +
116F ASN* 3.5 17.8 + - - +
117F GLN* 2.9 29.6 + - - +
120F VAL* 4.7 2.7 - - + -
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Residues in contact with VAL 137 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133D ILE* 3.0 39.5 + - + +
134D LYS 4.2 3.1 - - - +
136D GLN* 1.3 79.1 - - - +
138D SER* 1.3 61.2 + - - +
140D ILE* 4.5 0.5 - - - +
141D LEU* 3.2 23.2 + - - +
171D ASN* 3.6 21.8 - - - +
172D LEU* 4.4 12.5 - - + +
175D GLU* 3.7 27.6 - - + -
192E VAL* 4.0 9.0 - - + -
196E LEU* 3.9 22.9 - - + +
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Residues in contact with SER 138 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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134D LYS* 3.6 14.8 + - - -
135D THR* 4.7 7.0 - - - -
136D GLN 3.2 0.2 - - - -
137D VAL* 1.3 78.8 - - - +
139D GLN* 1.3 66.1 + - - +
141D LEU* 3.2 6.6 + - - +
142D ARG* 3.0 38.1 + - - +
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Residues in contact with GLN 139 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135D THR 3.9 15.5 - - - +
136D GLN* 3.6 8.5 + - - +
138D SER* 1.3 80.5 + - - +
140D ILE* 1.3 61.3 + - + +
142D ARG* 3.3 7.7 + - + +
143D VAL* 2.8 33.3 + - + +
117F GLN* 3.0 27.7 + - - +
120F VAL* 3.0 30.0 - - + +
121F THR* 5.3 1.8 + - - +
124F GLN* 4.9 10.3 - - - +
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Residues in contact with ILE 140 (chain D).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136D GLN* 2.9 26.3 + - + +
137D VAL 4.5 2.2 - - - +
139D GLN* 1.3 75.9 - - - +
141D LEU* 1.3 62.6 + - - +
143D VAL* 3.5 7.9 + - + +
144D GLU* 3.0 21.1 + - - +
196E LEU* 3.8 32.5 - - + +
199E LYS* 3.8 24.9 - - + -
200E MET* 3.4 36.6 - - + -
203E MET* 4.1 12.2 - - + +
120F VAL* 3.5 23.3 - - + -
123F LEU* 6.1 0.4 - - + -
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Residues in contact with LEU 141 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137D VAL 3.2 20.4 + - - +
138D SER* 3.5 7.0 - - - +
139D GLN 3.2 0.6 - - - -
140D ILE* 1.3 75.4 - - - +
142D ARG* 1.3 70.2 + - - +
144D GLU* 3.0 28.9 + - - +
145D VAL* 3.2 19.6 + - + +
172D LEU* 4.3 31.2 - - + -
199E LYS* 5.4 7.0 - - - +
445E GLU* 5.6 10.5 - - + +
446E GLN* 4.9 19.7 - - + +
----------------------------------------------------------
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Residues in contact with ARG 142 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138D SER* 3.0 24.7 + - - +
139D GLN* 3.6 9.8 - - + +
141D LEU* 1.3 81.1 - - - +
143D VAL* 1.3 65.3 + - + +
145D VAL* 3.0 7.0 + - - +
146D ASP* 2.9 33.3 + - - +
444E LYS 5.5 1.0 + - - -
445E GLU* 2.8 24.3 + - - +
446E GLN* 3.3 31.4 - - - +
447E ALA 3.4 17.3 + - - -
448E ASP* 4.1 17.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL 143 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139D GLN* 2.8 29.5 + - + +
140D ILE* 3.6 6.5 - - + +
142D ARG* 1.3 76.4 - - + +
144D GLU* 1.3 58.5 + - - +
146D ASP* 3.0 11.0 + - - +
147D ILE* 2.8 48.4 + - + +
203E MET* 4.9 1.1 - - - -
120F VAL* 4.0 14.8 - - + +
123F LEU* 4.3 22.9 - - + +
124F GLN* 3.0 32.5 - - - +
127F LEU* 5.1 4.5 - - + -
----------------------------------------------------------
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Residues in contact with GLU 144 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140D ILE 3.0 10.6 + - - +
141D LEU* 3.0 23.0 + - + +
143D VAL* 1.3 76.3 - - - +
145D VAL* 1.3 57.8 + - - +
147D ILE* 3.3 3.6 + - - +
148D ASP* 2.8 25.6 + - - +
164D TYR* 2.7 28.9 + - + +
166D LEU* 3.1 32.0 - - + +
167D ASP 5.6 0.2 + - - -
199E LYS* 3.0 41.4 + - + +
202E ARG* 4.8 2.6 + - - -
203E MET* 3.5 20.4 - - + -
----------------------------------------------------------
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Residues in contact with VAL 145 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141D LEU* 3.2 13.8 + - + +
142D ARG 3.0 8.2 + - - +
144D GLU* 1.3 76.6 - - + +
146D ASP* 1.3 61.1 + - - +
148D ASP* 3.7 7.8 - - + +
149D VAL* 2.8 33.6 + - + +
166D LEU* 4.9 17.9 - - + -
435E ARG* 3.6 17.3 - - - +
437E TYR* 3.7 26.2 - - + -
446E GLN* 3.9 34.8 - - + +
----------------------------------------------------------
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Residues in contact with ASP 146 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142D ARG* 2.9 31.0 + - - +
143D VAL* 3.2 11.8 - - - +
145D VAL* 1.3 75.6 - - - +
147D ILE* 1.3 57.5 + - - +
149D VAL* 3.6 3.6 + - - +
150D ALA* 3.2 20.6 + - - +
435E ARG* 2.8 39.8 + - - +
446E GLN 4.7 0.3 - - - +
448E ASP* 3.9 17.3 - - - +
124F GLN* 5.4 3.8 + - - +
127F LEU* 3.3 30.2 - - + +
131F ARG* 3.6 16.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 147 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143D VAL* 2.8 33.7 + - + +
144D GLU* 3.5 4.7 - - - +
146D ASP* 1.3 74.7 - - - +
148D ASP* 1.3 66.4 + - - +
149D VAL 3.1 1.6 - - - -
150D ALA* 3.9 0.4 - - - +
151D LEU* 2.9 34.2 + - + +
164D TYR* 4.8 4.9 - - + -
203E MET* 3.8 35.4 - - + +
207E ILE* 3.5 35.2 - - + -
123F LEU* 4.4 14.8 - - + +
127F LEU* 3.8 26.2 - - + +
----------------------------------------------------------
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Residues in contact with ASP 148 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144D GLU 2.8 20.2 + - - +
145D VAL* 3.7 11.0 - - - +
147D ILE* 1.3 75.1 - - - +
149D VAL* 1.3 65.3 + - - +
151D LEU* 4.3 2.7 - - - +
152D ARG* 2.9 64.6 + - - +
164D TYR* 3.7 33.8 - - + +
166D LEU* 4.6 20.1 + - + +
438E TRP* 4.0 14.7 + - - +
----------------------------------------------------------
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Residues in contact with VAL 149 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145D VAL* 2.8 28.3 + - + +
146D ASP 3.7 5.4 - - - +
148D ASP* 1.3 81.2 - - - +
150D ALA* 1.3 66.1 + - - +
152D ARG* 3.7 8.0 - - - +
153D ALA* 3.7 11.8 + - - +
279E GLY* 4.6 3.5 - - - +
435E ARG* 4.0 40.4 - - + +
436E TYR* 4.1 31.1 - - + +
437E TYR* 4.7 7.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA 150 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146D ASP 3.2 17.2 + - - +
147D ILE 3.9 1.3 - - - +
149D VAL* 1.3 74.1 - - + +
151D LEU* 1.3 58.8 + - - +
152D ARG 3.0 1.3 - - - -
153D ALA* 2.5 39.8 + - - +
154D CYS* 3.6 4.6 + - - -
127F LEU* 3.7 20.0 - - + -
130F ILE* 4.0 14.4 - - + -
131F ARG* 4.0 19.3 - - + +
134F CYS* 4.8 0.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 151 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147D ILE* 2.9 26.0 + - + +
148D ASP 4.3 2.9 - - - +
150D ALA* 1.3 76.6 - - - +
152D ARG* 1.3 62.4 + - - +
154D CYS* 3.0 24.5 + - - +
161D TYR* 3.3 12.0 - - + +
164D TYR* 3.8 30.1 - - + +
206E ALA* 4.0 15.3 - - + +
207E ILE* 3.2 37.7 - - + -
210E GLN* 4.1 24.5 - - + +
130F ILE* 3.7 24.7 - - + -
----------------------------------------------------------
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Residues in contact with ARG 152 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148D ASP* 2.9 65.8 + - - +
149D VAL* 3.7 10.0 - - - +
150D ALA 2.9 0.6 + - - -
151D LEU* 1.3 79.2 - - - +
153D ALA* 1.3 59.5 + - - +
154D CYS 3.3 0.5 + - - -
155D LYS* 3.3 20.4 + - + +
161D TYR* 3.5 19.3 + - + +
163D GLU* 3.2 27.9 + - - -
164D TYR 4.1 4.4 + - - +
278E ASP* 4.6 2.2 - - + +
279E GLY* 2.8 45.5 - - - +
436E TYR* 4.2 11.0 + - - -
438E TRP* 3.1 48.6 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il