Contacts of the helix formed by residues 584 - 630 (chain A) in PDB entry 1LWZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 584 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
567A CYS* 6.5 0.2 - - - -
570A MET* 4.9 5.8 - - - -
582A TYR* 3.4 0.7 - - - +
583A ASP* 1.3 87.7 - - + +
585A VAL* 1.4 63.4 + - - +
586A LEU* 3.4 15.1 + - + +
587A ASP* 2.7 47.6 + - - +
588A ILE* 3.3 15.2 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 585 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420A ILE* 3.2 35.7 - - + -
438A ASP* 3.7 12.3 - - - +
459A LEU* 4.2 31.2 - - + +
567A CYS* 5.3 9.6 - - - -
570A MET* 4.6 17.7 - - + -
584A THR* 1.4 73.4 - - - +
586A LEU* 1.3 67.9 + - + +
588A ILE* 2.9 23.5 + - + +
589A LEU* 2.9 13.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 586 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456A LEU* 3.8 36.1 - - + +
457A PRO 3.4 26.2 - - - +
458A MET* 4.8 7.2 - - + -
459A LEU* 3.9 14.6 - - + +
584A THR* 3.6 11.9 - - + +
585A VAL* 1.3 78.7 - - + +
587A ASP* 1.3 62.7 + - - +
589A LEU* 3.6 7.9 - - + +
590A ARG* 2.9 33.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 587 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580A LYS* 5.7 3.6 + - - +
582A TYR* 4.1 18.3 - - + -
583A ASP* 3.2 18.6 - - - +
584A THR* 2.7 44.3 + - - +
585A VAL 3.1 0.4 - - - -
586A LEU* 1.3 78.0 - - - +
588A ILE* 1.3 61.8 + - - +
590A ARG* 3.4 24.4 + - - +
591A ASP* 3.2 22.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 588 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289A VAL* 3.3 19.3 - - + +
417A MET* 3.1 38.5 - - + +
419A LEU* 3.4 9.9 - - + -
420A ILE* 6.5 0.4 - - + -
433A LYS* 4.5 0.9 - - - +
570A MET* 3.1 40.4 - - + -
582A TYR* 3.4 30.3 - - + -
584A THR 3.3 16.2 - - - +
585A VAL* 2.9 9.1 + - + +
587A ASP* 1.3 77.4 - - - +
589A LEU* 1.3 61.7 + - - +
591A ASP* 3.3 6.6 + - - +
592A PHE* 3.2 21.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 589 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
417A MET* 4.6 9.1 - - + +
420A ILE* 5.4 5.8 - - + -
443A VAL* 4.2 12.8 - - + -
446A ILE* 2.9 42.0 - - + +
447A ARG* 3.7 28.5 - - + -
450A MET* 4.5 7.6 - - + -
456A LEU* 3.9 25.1 - - + -
459A LEU* 5.9 0.7 - - + -
585A VAL* 2.9 15.1 + - + +
586A LEU* 3.6 11.0 - - + +
588A ILE* 1.3 77.8 - - - +
590A ARG* 1.3 56.9 + - - +
592A PHE* 3.3 14.4 + - + +
593A PHE* 2.9 25.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 590 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450A MET* 4.0 22.9 - - - -
456A LEU* 4.0 16.6 - - + -
586A LEU* 2.9 23.7 + - - +
587A ASP* 3.9 23.0 + - - +
589A LEU* 1.3 75.0 - - - +
591A ASP* 1.3 67.2 + - - +
593A PHE* 3.0 19.5 + - + +
594A GLU* 3.2 15.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 591 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289A VAL* 4.7 9.2 - - + +
290A ASP* 4.5 1.4 - - - +
574A ASP* 4.5 5.5 - - - +
575A HIS* 4.3 15.2 + - - +
580A LYS* 4.7 10.1 + - - +
582A TYR* 4.2 21.2 + - + +
587A ASP 3.2 12.0 + - - +
588A ILE* 3.8 9.2 - - - +
590A ARG* 1.3 79.9 - - - +
592A PHE* 1.3 63.7 + - - +
594A GLU* 3.6 3.6 + - - +
595A LEU* 3.4 37.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 592 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289A VAL* 5.3 2.0 - - + +
290A ASP* 4.0 41.7 - - - +
413A PRO* 4.8 6.5 - - + -
414A ILE 3.0 31.2 - - - -
415A ILE 3.7 13.0 - - - -
416A PRO* 3.9 6.1 - - + -
417A MET* 3.9 32.1 - - + -
447A ARG* 4.7 1.8 - - - -
588A ILE 3.2 10.9 + - - +
589A LEU* 3.4 17.0 - - + +
590A ARG 3.1 0.2 - - - -
591A ASP* 1.3 79.9 - - - +
593A PHE* 1.3 67.1 + - - +
595A LEU* 3.2 4.3 + - + +
596A ARG* 2.9 53.2 + - + +
737A TRP* 4.3 9.2 - + - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 593 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447A ARG* 4.3 3.4 - - + -
450A MET* 3.0 47.8 - - + -
451A ASP* 2.9 31.4 - - - -
589A LEU* 2.9 16.1 + - + +
590A ARG* 3.0 14.3 + - - +
592A PHE* 1.3 81.9 - - - +
594A GLU* 1.3 75.3 + - + +
596A ARG* 3.1 3.6 + - - +
597A LEU* 2.7 69.0 + - + +
737A TRP* 3.5 12.3 - + - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 594 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
590A ARG 3.2 11.2 + - - +
591A ASP* 4.4 3.1 - - - +
592A PHE 3.3 0.2 - - - -
593A PHE* 1.3 97.2 - - + +
595A LEU* 1.3 64.9 + - + +
597A LEU* 3.2 5.8 + - + +
598A LYS* 3.0 22.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 595 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290A ASP* 3.0 30.7 - - - +
411A TYR* 5.9 1.1 - - + +
413A PRO* 6.4 1.1 - - + -
575A HIS* 3.2 46.7 - - + +
591A ASP* 3.4 22.9 + - - +
592A PHE* 3.2 6.8 + - + +
594A GLU* 1.3 78.5 - - + +
596A ARG* 1.3 62.4 + - - +
598A LYS* 3.0 17.0 - - + +
599A TYR* 2.8 42.8 + - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 596 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390A PRO* 3.6 7.3 - - - +
393A ASP* 2.6 37.2 + - - -
413A PRO* 3.1 26.9 + - - +
414A ILE 3.7 7.9 + - - +
415A ILE* 3.8 6.6 - - - +
592A PHE* 2.9 51.2 + - + +
593A PHE 3.4 4.9 - - - +
595A LEU* 1.3 74.6 - - - +
597A LEU* 1.3 66.0 + - - +
599A TYR* 3.1 32.0 + - - +
600A TYR* 2.9 51.5 + - + +
603A ARG* 3.2 9.7 - - - +
737A TRP* 4.2 10.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 597 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
451A ASP* 4.8 5.8 - - - +
593A PHE* 2.7 66.1 + - + +
594A GLU* 3.6 8.5 - - + +
596A ARG* 1.3 75.0 - - - +
598A LYS* 1.3 63.9 + - - +
600A TYR* 3.1 17.0 + - + +
601A GLY* 3.2 9.5 + - - -
733A PRO* 4.5 8.6 - - + +
734A SER* 5.0 15.5 - - - +
737A TRP* 2.9 39.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 598 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
594A GLU 3.0 11.9 + - - +
595A LEU* 3.0 26.0 + - + +
597A LEU* 1.3 77.4 - - - +
599A TYR* 1.3 82.1 + - + +
601A GLY* 3.0 5.0 + - - -
602A LEU* 2.9 27.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 599 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290A ASP* 6.5 0.2 - - - -
393A ASP* 5.3 3.1 - - + -
396A LEU* 3.3 39.6 - - + +
397A LYS* 5.3 4.6 - - + -
411A TYR* 2.6 38.5 + + - -
413A PRO* 3.8 30.5 - - + -
595A LEU* 2.8 45.1 + - + -
596A ARG* 3.1 27.4 - - - +
598A LYS* 1.3 92.1 - - + +
600A TYR* 1.3 50.2 + - - +
602A LEU* 2.9 15.3 + - + +
603A ARG* 2.6 32.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 600 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415A ILE* 3.0 26.9 - - - +
596A ARG* 2.9 51.4 + - + +
597A LEU* 3.1 7.8 + - + +
599A TYR* 1.3 76.0 - - - +
601A GLY* 1.3 63.5 + - - +
603A ARG* 2.9 44.5 + - - +
604A LYS* 3.0 22.2 + - - +
733A PRO* 3.6 22.9 - - + +
736A LEU* 4.1 6.6 - - + +
737A TRP* 3.0 63.5 - + + -
740A ASP* 2.9 8.1 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 601 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
597A LEU 3.2 5.4 + - - -
598A LYS* 3.0 8.4 + - - -
600A TYR* 1.3 77.7 - - - +
602A LEU* 1.3 56.9 + - - +
604A LYS* 3.1 5.3 + - - +
605A GLU* 2.9 35.1 + - - +
733A PRO* 3.9 16.9 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 602 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A LEU* 3.0 38.6 - - + +
598A LYS* 2.9 20.0 + - + +
599A TYR* 2.9 21.3 + - + +
601A GLY* 1.3 77.2 - - - +
603A ARG* 1.3 60.6 + - - +
605A GLU* 3.4 4.6 + - - -
606A TRP* 2.9 50.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 603 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390A PRO* 3.4 9.4 - - - +
392A ASP* 3.7 31.9 + - + +
393A ASP* 2.8 44.4 + - - +
396A LEU* 3.3 10.3 - - + +
596A ARG* 3.2 9.1 - - - +
599A TYR 2.6 17.1 + - - +
600A TYR* 2.9 39.7 - - - +
601A GLY 3.2 0.2 - - - -
602A LEU* 1.3 73.2 - - - +
604A LYS* 1.3 57.9 + - - +
606A TRP* 3.1 3.3 + - - +
607A LEU* 2.8 42.0 + - + +
736A LEU* 2.9 30.9 - - - +
740A ASP* 2.7 27.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 604 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600A TYR 3.0 14.3 + - - +
601A GLY* 3.6 9.0 - - - +
603A ARG* 1.3 78.1 - - - +
605A GLU* 1.3 65.5 + - + +
607A LEU* 3.1 7.0 + - - +
608A LEU* 2.8 43.7 + - + +
728A LEU* 3.1 41.4 + - + +
729A LYS 5.1 1.8 - - - +
731A LYS* 2.7 38.9 + - - +
732A SER* 3.5 18.3 + - - -
733A PRO* 4.2 6.5 - - + -
736A LEU* 4.5 16.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 605 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
601A GLY 2.9 19.7 + - - +
602A LEU* 3.9 6.1 - - - +
604A LYS* 1.3 78.3 - - + +
606A TRP* 1.3 67.9 + - + +
608A LEU* 3.9 15.5 - - - +
609A GLY* 3.0 22.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with TRP 606 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A THR* 2.8 60.6 - - + +
396A LEU* 4.9 4.0 - - + -
602A LEU* 2.9 49.8 + - + +
603A ARG* 3.7 4.9 - - - +
605A GLU* 1.3 82.8 - - + +
607A LEU* 1.3 65.7 + - + +
609A GLY* 3.4 0.7 + - - -
610A MET* 3.1 26.2 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 607 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A ASP* 3.9 32.3 - - + +
603A ARG* 2.8 43.7 + - + +
604A LYS* 3.8 1.8 - - - +
606A TRP* 1.3 75.8 - - + +
608A LEU* 1.3 61.8 + - - +
610A MET* 3.1 13.1 + - + +
611A LEU* 2.9 29.6 + - + +
728A LEU* 3.4 30.3 - - + -
736A LEU* 5.1 4.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 608 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604A LYS* 2.8 35.6 + - + +
605A GLU* 3.9 17.5 - - - +
607A LEU* 1.3 76.2 - - - +
609A GLY* 1.3 62.9 + - - +
611A LEU 3.2 0.7 + - - -
612A GLY* 2.9 19.9 + - - -
725A LEU* 3.3 28.0 - - + +
728A LEU* 2.9 42.8 - - + -
729A LYS* 3.8 29.6 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 609 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
605A GLU 3.0 15.9 + - - -
606A TRP* 3.9 1.1 - - - -
608A LEU* 1.3 78.3 - - - +
610A MET* 1.3 62.3 + - - +
612A GLY* 3.2 3.4 + - - -
613A ALA* 3.0 20.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 610 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A THR* 5.6 10.3 - - + -
606A TRP* 3.1 16.7 + - + +
607A LEU* 3.1 17.0 + - + +
609A GLY* 1.3 74.3 - - - +
611A LEU* 1.3 63.9 + - + +
613A ALA* 3.0 9.8 + - + +
614A GLU* 2.8 32.3 + - + +
675A GLU 4.7 13.7 - - - +
676A SER* 5.6 7.4 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 611 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
607A LEU* 2.9 16.9 + - + +
608A LEU 3.7 0.4 - - - +
610A MET* 1.3 79.6 - - + +
612A GLY* 1.3 57.5 + - - +
614A GLU* 3.0 11.6 + - - +
615A SER* 2.8 28.6 + - - -
721A LYS* 3.9 16.5 - - + +
724A GLU* 3.1 34.1 - - + +
725A LEU* 3.4 45.3 - - + +
728A LEU* 4.1 21.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 612 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608A LEU 2.9 14.4 + - - -
609A GLY* 3.6 4.3 - - - -
611A LEU* 1.3 76.3 - - - +
613A ALA* 1.3 60.8 + - - +
615A SER* 2.6 26.3 + - - -
616A ALA* 3.0 7.8 + - - +
725A LEU* 4.1 14.3 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 613 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
609A GLY 3.0 11.9 + - - +
610A MET* 3.0 14.8 + - + +
612A GLY* 1.3 76.2 - - - +
614A GLU* 1.3 57.5 + - - +
616A ALA* 3.1 10.5 + - - +
617A LYS* 2.9 27.2 + - - +
672A GLU* 4.1 6.2 - - - +
676A SER* 3.4 28.7 - - - +
677A ASP* 5.2 2.5 - - - -
678A ASN* 5.4 3.1 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 614 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
610A MET* 2.8 17.8 + - + +
611A LEU* 3.5 16.2 - - - +
613A ALA* 1.3 74.6 - - - +
615A SER* 1.3 66.1 + - - +
617A LYS* 3.0 10.5 + - + +
618A LEU* 2.9 41.7 + - + +
672A GLU* 5.7 0.7 - - - -
676A SER* 6.5 0.7 - - - -
721A LYS* 2.8 44.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 615 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611A LEU 2.8 13.2 + - - -
612A GLY* 2.6 23.9 + - - -
614A GLU* 1.3 74.9 - - - +
616A ALA* 1.3 57.0 + - - +
618A LEU* 3.4 5.1 + - - +
619A ASN* 2.9 29.6 + - - +
718A ARG* 4.8 6.8 - - - +
721A LYS* 4.0 16.1 - - - +
722A GLU* 5.1 15.3 - - - -
725A LEU* 5.4 5.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 616 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
612A GLY 3.0 8.3 + - - +
613A ALA* 3.3 12.1 - - - +
614A GLU 3.1 0.2 - - - -
615A SER* 1.3 78.8 + - - +
617A LYS* 1.3 65.7 + - - +
619A ASN* 2.5 28.5 - - - +
620A ASN* 2.9 21.2 + - - +
653A ASP* 5.7 1.3 - - - +
678A ASN* 4.9 13.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 617 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
613A ALA 2.9 13.9 + - - +
614A GLU* 3.0 14.8 + - + +
616A ALA* 1.3 75.1 - - - +
618A LEU* 1.3 66.4 + - + +
620A ASN* 3.2 4.2 + - - +
621A GLN* 2.9 44.5 + - - +
670A GLU* 3.8 23.4 + - - +
671A GLU* 3.7 11.0 - - - +
672A GLU* 3.4 27.9 + - - +
676A SER* 4.9 4.8 + - - +
678A ASN* 5.4 0.2 - - - +
697A TYR* 3.6 33.7 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 618 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
614A GLU* 2.9 30.0 + - + +
615A SER* 3.8 4.3 - - - +
617A LYS* 1.3 80.4 - - + +
619A ASN* 1.3 64.8 + - - +
621A GLN* 3.2 19.5 + - - +
622A ALA* 2.9 24.1 + - - +
714A LEU* 4.0 17.9 - - + +
717A LEU* 3.4 24.0 - - + +
718A ARG* 3.4 38.2 + - + +
721A LYS* 3.6 24.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 619 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615A SER 2.9 12.2 + - - +
616A ALA* 2.5 34.5 - - - +
618A LEU* 1.3 76.8 - - - +
620A ASN* 1.3 92.1 + - - +
623A ARG* 3.0 38.5 + - + +
718A ARG* 3.2 33.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 620 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
616A ALA* 2.9 16.0 + - - +
617A LYS 3.7 1.1 - - - +
619A ASN* 1.3 93.9 + - - +
621A GLN* 1.3 66.7 + - - +
623A ARG* 2.8 37.2 + - - +
624A PHE* 2.9 20.3 + - - +
651A GLY 5.1 0.6 + - - -
652A TYR* 3.0 12.3 - - + +
653A ASP* 4.7 4.3 + - - +
671A GLU* 2.8 36.1 - - - +
678A ASN* 3.7 7.6 + - - -
697A TYR* 3.6 13.2 - - + +
698A LEU* 4.2 1.1 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 621 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
617A LYS* 2.9 40.3 + - - +
618A LEU* 3.7 14.5 - - - +
620A ASN* 1.3 76.3 - - - +
622A ALA* 1.3 62.7 + - - +
624A PHE* 3.4 1.0 + - - +
625A ILE* 3.0 29.5 + - - +
697A TYR* 3.1 36.8 + - + -
698A LEU* 3.9 7.0 - - - -
700A ASP* 4.9 1.0 + - - -
701A MET* 4.1 22.3 - - + +
714A LEU* 3.5 30.3 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 622 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
618A LEU 2.9 12.0 + - - +
619A ASN 3.5 0.2 - - - +
621A GLN* 1.3 76.6 - - - +
623A ARG* 1.3 55.5 + - - +
625A ILE* 3.8 2.4 - - - +
626A LEU* 2.9 33.2 + - - +
705A TYR* 4.9 2.9 - - - +
714A LEU* 3.6 17.0 - - + +
715A CYS* 5.8 6.5 - - + -
718A ARG* 2.9 35.9 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 623 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
619A ASN* 3.0 25.4 + - + +
620A ASN* 2.8 35.0 + - - +
622A ALA* 1.3 76.6 - - - +
624A PHE* 1.3 50.8 + - - +
626A LEU* 3.2 7.6 + - - +
627A GLU* 2.8 34.7 + - - +
650A ARG* 4.1 22.9 + - - +
651A GLY* 3.6 5.1 + - - -
652A TYR* 2.8 65.1 + - - +
718A ARG* 4.8 4.7 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 624 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
620A ASN 2.9 5.5 + - - +
621A GLN 3.7 2.2 - - - +
623A ARG* 1.3 76.1 - - - +
625A ILE* 1.3 59.6 + - - +
627A GLU* 2.7 36.3 - - - +
628A LYS* 2.9 67.2 + - + +
633A ILE* 4.8 7.4 - - + -
635A ILE* 5.0 8.7 - - + -
643A LEU* 5.1 0.7 - - + -
647A LEU* 3.7 23.3 - - + -
652A TYR* 2.7 14.2 + - + +
698A LEU* 3.4 47.8 - - + -
699A LEU* 4.2 21.8 - - + -
701A MET* 3.7 15.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 625 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
621A GLN 3.0 16.5 + - - +
622A ALA 3.9 3.1 - - - +
624A PHE* 1.3 75.9 - - - +
626A LEU* 1.3 59.1 + - - +
628A LYS* 2.9 38.5 + - - +
629A ILE* 2.8 52.7 + - + +
701A MET* 3.1 25.6 - - + -
702A PRO 5.9 0.2 - - - +
705A TYR* 2.9 56.8 - - + +
706A LEU* 4.0 9.2 - - + -
711A LYS* 4.8 0.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 626 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
622A ALA 2.9 18.8 + - - +
623A ARG* 3.6 7.4 - - - +
625A ILE* 1.3 77.4 - - - +
627A GLU* 1.4 59.6 + - - +
629A ILE* 3.1 12.7 + - + +
630A ASP* 2.7 63.9 + - - +
632A LYS* 5.9 0.2 - - + -
711A LYS* 6.3 2.9 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 627 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
623A ARG 2.8 13.3 + - - +
624A PHE* 2.7 37.5 - - - +
626A LEU* 1.4 79.9 - - - +
628A LYS* 1.3 55.5 + - - +
630A ASP 3.5 0.3 + - - -
631A GLY 2.9 5.4 + - - -
632A LYS* 2.7 47.1 + - + +
633A ILE* 2.9 33.0 + - + +
647A LEU* 4.6 1.6 - - - +
650A ARG* 2.7 38.5 + - - +
652A TYR* 2.9 31.4 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 628 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
624A PHE* 2.9 48.5 + - + +
625A ILE* 2.9 35.6 - - - +
627A GLU* 1.3 74.3 - - - +
629A ILE* 1.3 65.6 + - - +
631A GLY* 2.9 13.7 + - - -
633A ILE* 3.2 33.0 - - + +
634A ILE* 5.9 0.2 - - - +
635A ILE* 5.1 15.0 - - + +
698A LEU 5.2 0.4 + - - -
701A MET* 4.6 3.2 - - - +
702A PRO 5.7 1.4 + - - -
706A LEU* 2.9 34.4 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 629 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
625A ILE* 2.8 46.9 + - + +
626A LEU* 3.5 9.9 - - + +
628A LYS* 1.3 77.7 - - + +
630A ASP* 1.3 70.4 + - - +
631A GLY* 4.3 0.5 - - - -
706A LEU* 4.3 17.7 - - + +
711A LYS* 3.9 33.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 630 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
626A LEU* 2.7 42.7 + - - +
629A ILE* 1.3 83.6 - - - +
631A GLY* 1.3 60.3 + - - +
632A LYS* 3.7 29.5 - - + +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il