Contacts of the helix formed by residues 82 - 161 (chain A) in PDB entry 1M1J
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LYS 82 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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78A GLN 4.1 8.7 - - - +
79A ASN* 3.2 37.5 + - - +
81A TYR* 1.3 88.5 - - + +
83A THR* 1.3 57.4 + - - +
84A SER 2.8 4.0 - - - -
85A ASN* 2.7 25.5 + - + -
86A ARG* 2.7 44.3 + - - +
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Residues in contact with THR 83 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79A ASN 3.4 10.6 + - - -
80A LYS* 4.3 8.2 - - + -
82A LYS* 1.3 77.7 - - - +
84A SER* 1.3 57.4 + - - +
86A ARG* 5.1 2.1 - - - +
87A VAL* 3.0 32.3 + - + +
58C GLU* 4.4 13.0 - - - +
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Residues in contact with SER 84 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A LYS 4.1 8.9 - - - -
81A TYR* 4.6 4.5 - - - -
82A LYS 2.8 1.2 - - - +
83A THR* 1.3 80.2 - - - +
85A ASN* 1.3 67.4 + - - +
87A VAL* 3.5 8.7 + - - +
88A ILE 3.7 0.5 + - - -
119B MET* 5.2 0.7 - - - -
54C THR 5.0 0.7 - - - -
57C ILE* 3.0 19.4 - - - +
58C GLU* 3.2 31.4 + - - +
61C ILE* 2.8 42.5 - - - +
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Residues in contact with ASN 85 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81A TYR* 3.1 32.1 + - - +
82A LYS* 2.7 14.9 + - + +
84A SER* 1.3 72.9 - - - +
86A ARG* 1.3 70.3 + - - +
88A ILE* 2.5 41.0 + - - +
89A VAL* 2.9 31.8 + - - +
119B MET* 4.6 19.2 - - + +
61C ILE* 5.1 0.2 - - - -
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Residues in contact with ARG 86 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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82A LYS* 2.7 45.3 + - - +
83A THR* 5.1 1.6 - - - +
85A ASN* 1.3 88.3 - - - +
87A VAL* 1.3 53.7 + - + +
88A ILE 2.4 18.3 + - - -
89A VAL* 4.3 7.6 - - + +
90A GLU* 3.0 29.1 + - - +
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Residues in contact with VAL 87 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A THR* 3.0 25.9 + - + +
84A SER* 3.5 7.6 + - - +
85A ASN 3.1 1.0 + - - -
86A ARG* 1.3 75.8 - - + +
88A ILE* 1.3 53.1 + - - +
90A GLU* 3.8 17.0 - - + +
91A THR* 2.5 28.1 + - - +
61C ILE* 3.6 23.3 - - + +
65C LYS* 4.0 25.4 - - + +
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Residues in contact with ILE 88 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84A SER 4.4 0.4 - - - +
85A ASN* 2.5 18.0 + - - +
86A ARG 2.4 13.7 + - - -
87A VAL* 1.3 70.1 - - - +
89A VAL* 1.3 62.4 + - + +
90A GLU 2.5 15.9 + - - -
91A THR* 2.6 17.1 + - - +
92A ILE* 2.8 25.9 + - + +
119B MET* 5.1 3.4 - - - -
122B TYR* 5.0 9.9 - - + -
123B VAL* 3.3 33.0 - - + -
126B ILE* 6.4 0.4 - - + -
57C ILE* 4.7 0.9 - - + -
61C ILE* 3.2 45.3 - - + -
64C ILE* 5.7 4.3 - - + -
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Residues in contact with VAL 89 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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85A ASN* 2.9 35.8 + - - +
86A ARG* 3.2 9.8 + - + +
88A ILE* 1.3 80.8 - - + +
90A GLU* 1.3 55.7 + - - +
92A ILE* 3.9 14.2 - - + +
93A ASN* 2.8 21.4 - - - +
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Residues in contact with GLU 90 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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86A ARG* 3.0 25.5 + - - +
87A VAL* 3.8 20.9 + - - +
88A ILE 2.5 4.8 + - - -
89A VAL* 1.3 75.8 - - - +
91A THR* 1.3 66.6 + - - +
92A ILE 2.9 4.9 - - - -
93A ASN* 2.9 18.5 + - - +
94A ILE* 3.0 33.1 + - + +
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Residues in contact with THR 91 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87A VAL* 2.5 27.1 + - - +
88A ILE* 2.6 15.3 + - - -
90A GLU* 1.3 78.8 - - - +
92A ILE* 1.3 61.3 + - - +
94A ILE* 3.7 15.1 - - + +
95A LEU* 3.1 41.3 + - + +
61C ILE* 5.0 0.8 - - + +
64C ILE* 4.3 17.3 - - + -
65C LYS* 4.4 19.4 - - + +
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Residues in contact with ILE 92 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88A ILE* 2.8 26.6 + - + +
89A VAL* 3.9 17.7 - - + +
90A GLU 2.9 0.2 - - - -
91A THR* 1.3 77.5 - - - +
93A ASN* 1.3 63.4 + - - +
95A LEU* 3.2 0.4 + - - -
96A LYS* 2.5 61.6 + - + +
216A VAL* 6.4 0.7 - - + -
122B TYR* 3.3 26.5 - - + +
126B ILE* 5.2 7.9 - - + -
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Residues in contact with ASN 93 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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89A VAL 2.8 26.5 - - - +
90A GLU* 2.9 8.0 + - - +
92A ILE* 1.3 82.7 - - - +
94A ILE* 1.3 57.9 + - + +
96A LYS* 4.9 0.2 - - - -
97A PRO* 3.0 30.6 - - + +
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Residues in contact with ILE 94 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90A GLU* 3.0 35.1 + - + +
91A THR* 3.8 19.7 - - + +
92A ILE 3.2 0.2 - - - -
93A ASN* 1.3 78.2 - - + +
95A LEU* 1.3 72.7 + - + +
97A PRO* 4.7 0.7 - - - -
98A GLY* 5.0 4.3 + - - -
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Residues in contact with LEU 95 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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91A THR* 3.1 30.0 + - + +
92A ILE* 5.4 0.2 - - - -
94A ILE* 1.3 92.5 - - + +
96A LYS* 1.3 65.0 + - - +
97A PRO* 3.4 2.2 - - - -
98A GLY* 3.9 4.3 - - - +
99A LEU* 3.0 37.0 + - + +
130B LEU* 4.3 17.5 - - + -
64C ILE* 4.5 8.3 - - + +
65C LYS* 5.9 1.6 - - - -
68C TYR* 3.3 53.4 - - + -
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Residues in contact with LYS 96 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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92A ILE* 2.5 42.9 + - + +
93A ASN* 4.9 0.4 - - - -
95A LEU* 1.3 72.2 - - - +
97A PRO* 1.3 62.4 - - + +
99A LEU* 3.1 7.7 + - - +
100A GLU* 2.8 44.9 + - + +
216A VAL* 4.6 20.2 - - + -
217A PRO* 3.5 37.8 - - - +
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Residues in contact with PRO 97 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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93A ASN* 3.0 28.5 - - + +
94A ILE 4.7 0.2 - - - -
96A LYS* 1.3 98.6 - - + +
98A GLY* 1.3 54.0 + - - +
100A GLU* 2.6 29.6 + - + +
101A GLY* 2.7 17.0 + - - -
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Residues in contact with GLY 98 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94A ILE 5.0 3.4 + - - -
95A LEU* 3.5 10.9 + - - +
96A LYS 3.3 0.4 - - - -
97A PRO* 1.3 80.5 - - - +
99A LEU* 1.3 63.7 + - - +
101A GLY* 5.6 0.4 - - - -
102A ALA* 3.1 24.8 + - - +
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Residues in contact with LEU 99 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95A LEU* 3.0 31.6 - - + +
96A LYS* 3.1 7.1 + - - +
97A PRO 2.9 0.8 - - - -
98A GLY* 1.3 80.4 - - - +
100A GLU* 1.3 66.0 + - - +
101A GLY 3.5 0.2 - - - -
102A ALA* 4.0 9.6 - - + +
103A GLN* 3.3 19.9 + - - +
216A VAL* 6.1 6.5 - - + -
129B LYS* 6.5 0.7 - - - -
130B LEU* 4.3 11.7 - - + -
133B THR* 3.5 25.8 - - + -
137B ARG* 6.3 0.9 - - + -
68C TYR* 3.1 44.4 - - + +
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Residues in contact with GLU 100 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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96A LYS* 2.8 33.2 + - + +
97A PRO* 2.6 22.0 + - + +
99A LEU* 1.3 71.6 - - - +
101A GLY* 1.3 63.9 + - - +
103A GLN* 3.0 24.1 - - - +
104A GLN* 3.3 5.7 + - - +
213A ASP* 5.7 0.7 - - - +
217A PRO* 5.8 1.0 - - - +
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Residues in contact with GLY 101 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97A PRO 2.7 16.0 + - - -
98A GLY 4.7 0.4 - - - -
100A GLU* 1.3 70.1 - - - +
102A ALA* 1.3 53.7 + - - +
103A GLN 2.8 4.5 - - - -
104A GLN* 2.5 34.1 + - - +
105A LEU* 2.9 14.7 + - - +
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Residues in contact with ALA 102 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98A GLY 3.1 22.9 + - - +
99A LEU* 4.0 12.6 - - + +
101A GLY* 1.3 73.8 - - - +
103A GLN* 1.3 61.3 + - - +
105A LEU* 3.4 15.7 + - - +
106A ASP* 3.2 31.4 + - - +
137B ARG* 5.5 10.2 + - - +
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Residues in contact with GLN 103 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99A LEU 3.3 11.9 + - - +
100A GLU* 3.0 22.8 + - - +
101A GLY 2.7 1.0 + - - -
102A ALA* 1.3 79.3 - - - +
104A GLN* 1.3 55.9 + - - +
106A ASP* 3.2 9.6 + - - +
107A GLU* 2.8 57.1 + - - +
210A PRO* 3.8 36.2 - - - +
211A LEU* 4.7 3.3 + - - +
213A ASP* 4.3 19.8 + - - +
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Residues in contact with GLN 104 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100A GLU 3.3 3.2 + - - +
101A GLY* 2.5 24.7 + - - +
103A GLN* 1.3 76.2 - - - +
105A LEU* 1.3 55.8 + - + +
107A GLU* 3.1 16.7 - - - +
108A ASN* 2.9 60.5 + - - +
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Residues in contact with LEU 105 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101A GLY 2.9 15.2 + - - +
102A ALA* 3.6 15.0 - - - +
103A GLN 3.2 0.2 - - - -
104A GLN* 1.3 75.5 - - + +
106A ASP* 1.3 68.9 + - - +
108A ASN* 3.0 12.0 + - + +
109A TYR* 2.9 24.1 + - - +
78C SER* 5.7 2.5 - - - +
79C ILE* 3.8 27.9 - - + +
80C GLU* 4.1 35.0 - - + +
83C THR* 4.9 1.4 - - + +
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Residues in contact with ASP 106 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A ALA* 3.2 15.8 + - - +
103A GLN* 3.2 14.4 + - - +
105A LEU* 1.3 78.1 - - - +
107A GLU* 1.3 63.8 + - - +
109A TYR* 3.7 5.6 + - - +
110A GLY* 3.4 13.2 + - - -
208A MET* 4.0 28.4 - - - +
210A PRO* 5.7 6.5 - - + +
137B ARG* 2.8 46.2 + - - -
140B ASN* 5.7 1.3 + - - -
144B LEU* 5.2 1.0 - - - +
79C ILE* 4.0 11.1 - - - +
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Residues in contact with GLU 107 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103A GLN* 2.8 34.8 + - - +
104A GLN* 3.1 28.0 - - - +
106A ASP* 1.3 76.8 - - - +
108A ASN* 1.3 66.2 + - - +
110A GLY* 3.0 15.2 + - - -
111A HIS* 3.5 26.6 + - - +
210A PRO* 5.6 1.8 - - - +
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Residues in contact with ASN 108 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104A GLN* 2.9 43.0 + - - +
105A LEU* 3.6 10.0 - - + +
107A GLU* 1.3 73.5 - - - +
109A TYR* 1.3 65.0 + - - +
110A GLY 2.7 5.6 + - - -
111A HIS* 2.7 27.3 + - - +
112A VAL* 3.1 18.9 + - + +
83C THR* 5.5 4.7 - - + -
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Residues in contact with TYR 109 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105A LEU 2.9 17.4 + - - +
106A ASP* 4.0 5.8 - - - +
108A ASN* 1.3 72.7 - - - +
110A GLY* 1.3 51.4 + - - +
112A VAL* 4.6 3.1 - - + -
113A SER* 2.7 62.1 + - - -
205A THR* 5.0 2.9 - - + -
208A MET* 4.7 9.0 - - + -
144B LEU* 4.0 39.0 - - + +
147B TYR* 3.7 20.2 - + - -
148B ASN* 3.5 21.3 + - - +
79C ILE* 4.2 9.2 - - + -
82C LEU* 3.6 32.8 - - + +
83C THR* 3.3 36.2 - - + +
86C SER* 4.2 8.7 + - - -
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Residues in contact with GLY 110 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106A ASP 3.4 7.5 + - - -
107A GLU 3.0 10.3 + - - -
108A ASN 2.7 3.0 + - - -
109A TYR* 1.3 79.6 - - - +
111A HIS* 1.3 64.8 + - - +
113A SER* 3.8 3.3 - - - -
114A THR* 3.1 31.3 + - - +
208A MET* 4.8 9.4 - - - -
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Residues in contact with HIS 111 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107A GLU* 3.5 33.2 + - - +
108A ASN* 2.7 24.6 + - - +
110A GLY* 1.3 69.9 - - - +
112A VAL* 1.3 68.5 - - + +
114A THR* 2.8 24.6 + - - -
115A GLU* 2.9 9.7 + - - +
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Residues in contact with VAL 112 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108A ASN* 3.1 18.7 + - + +
109A TYR* 4.1 6.3 - - + +
111A HIS* 1.3 79.5 - - + +
113A SER* 1.3 58.9 + - - +
115A GLU* 3.2 11.3 + - - +
116A LEU* 2.8 28.8 + - - +
83C THR* 4.0 10.5 - - - +
86C SER* 3.8 27.4 - - - -
87C LYS* 3.9 34.1 - - + +
90C ILE* 3.9 8.8 - - + +
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Residues in contact with SER 113 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109A TYR* 2.7 42.3 + - - -
110A GLY* 3.8 5.2 - - - -
112A VAL* 1.3 79.2 - - - +
114A THR* 1.3 59.1 + - - +
116A LEU* 3.5 9.5 + - - +
117A ARG* 3.0 26.2 + - - +
205A THR* 3.3 22.5 + - - -
147B TYR* 3.5 20.6 + - - -
86C SER* 5.5 0.7 - - - -
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Residues in contact with THR 114 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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110A GLY 3.1 15.4 + - - +
111A HIS* 2.8 21.5 + - - -
113A SER* 1.3 73.6 - - - +
115A GLU* 1.3 61.1 + - - +
117A ARG* 3.6 6.8 - - - +
118A ARG* 2.9 28.4 + - - +
205A THR* 5.2 6.7 - - - +
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Residues in contact with GLU 115 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111A HIS 2.9 11.7 + - - +
112A VAL* 3.6 12.5 - - - +
114A THR* 1.3 75.1 + - - +
116A LEU* 1.3 68.3 + - - +
118A ARG* 3.0 33.4 + - - +
119A ARG* 2.8 47.5 + - - +
90C ILE* 3.8 20.3 - - + +
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Residues in contact with LEU 116 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A VAL 2.8 17.7 + - - +
113A SER* 3.5 7.6 - - - +
115A GLU* 1.3 76.8 - - - +
117A ARG* 1.3 57.1 + - - +
119A ARG* 3.0 3.8 + - + +
120A ILE* 2.8 58.4 + - + +
147B TYR* 5.4 3.8 - - + +
148B ASN* 5.7 0.2 - - - +
151B MET* 3.3 29.8 - - + -
86C SER* 3.4 33.0 - - - +
89C ILE* 3.5 19.3 - - + -
90C ILE* 3.4 31.2 - - + +
93C ILE* 4.6 0.7 - - + -
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Residues in contact with ARG 117 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113A SER 3.0 18.5 + - - +
114A THR* 3.6 8.1 - - - +
115A GLU 3.2 0.2 - - - -
116A LEU* 1.3 77.2 - - - +
118A ARG* 1.3 63.3 + - - +
120A ILE* 3.3 11.3 + - - +
121A VAL* 2.9 32.4 + - - +
201A THR* 4.5 3.8 - - - +
202A THR* 3.2 38.2 + - - +
203A LEU* 3.1 51.4 + - + +
147B TYR* 3.7 19.5 + - - +
151B MET* 3.3 36.8 - - - +
154B HIS* 3.8 25.4 + - - -
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Residues in contact with ARG 118 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114A THR 2.9 15.1 + - - +
115A GLU* 3.3 39.5 + - - +
117A ARG* 1.3 78.2 - - - +
119A ARG* 1.3 91.5 + - - +
121A VAL* 3.3 6.4 + - - +
122A THR* 3.2 28.8 + - - +
203A LEU* 5.2 3.8 - - - -
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Residues in contact with ARG 119 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115A GLU* 2.8 38.4 + - - +
116A LEU* 3.1 12.8 - - + +
118A ARG* 1.3 104.9 - - - +
120A ILE* 1.3 65.1 + - - +
122A THR* 3.2 5.1 + - - -
123A LEU* 3.1 21.7 + - - +
90C ILE* 3.3 23.1 - - + +
93C ILE* 4.0 32.9 - - + +
94C ILE* 3.4 29.5 - - - +
----------------------------------------------------------
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Residues in contact with ILE 120 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116A LEU* 2.8 63.1 + - + +
117A ARG* 3.8 14.8 - - - +
119A ARG* 1.3 72.6 - - - +
121A VAL* 1.3 60.7 + - - +
123A LEU* 3.3 2.8 + - - +
124A LYS* 2.8 30.0 + - + +
151B MET* 3.9 16.2 - - + -
154B HIS* 3.4 35.0 - - + +
155B TYR* 4.8 14.8 - - + +
158B ILE* 4.0 9.1 - - + +
89C ILE* 4.4 2.7 - - + -
93C ILE* 3.2 21.5 - - + -
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Residues in contact with VAL 121 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117A ARG* 2.9 23.2 + - - +
118A ARG* 3.5 9.4 - - - +
120A ILE* 1.3 77.9 - - - +
122A THR* 1.3 66.5 + - - +
124A LYS* 3.4 6.1 + - - +
125A GLN* 3.2 21.9 + - + +
201A THR* 4.0 15.9 - - + -
203A LEU* 3.4 39.3 - - + -
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Residues in contact with THR 122 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A ARG* 3.2 17.0 + - - +
119A ARG* 3.2 10.3 + - - -
121A VAL* 1.3 81.4 - - - +
123A LEU* 1.3 63.0 + - - +
125A GLN* 3.1 9.8 + - - +
126A ARG* 3.1 37.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 123 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A ARG 3.1 12.5 + - - +
120A ILE* 3.7 3.8 - - - +
122A THR* 1.3 77.7 - - - +
124A LYS* 1.3 66.6 + - - +
126A ARG* 3.1 10.7 + - + +
127A VAL* 3.0 33.3 + - + +
155B TYR* 4.8 1.1 - - + -
158B ILE* 3.3 34.5 - - + -
162B LEU* 4.4 1.6 - - + -
93C ILE* 3.8 41.7 - - + +
96C TYR* 4.7 7.2 - - + -
100C ILE* 3.3 34.1 - - + -
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Residues in contact with LYS 124 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A ILE* 2.8 23.7 + - + +
121A VAL 3.7 4.5 - - - +
123A LEU* 1.3 72.9 - - - +
125A GLN* 1.3 58.2 + - - +
127A VAL* 4.0 2.2 - - - +
128A ALA* 3.1 26.7 + - + +
198A PHE* 3.0 64.7 + - - +
199A GLN* 4.0 4.0 - - - +
200A THR 3.1 26.5 + - - +
201A THR* 3.9 11.7 - - + -
154B HIS* 3.3 23.2 - - + +
157B TYR* 4.2 14.9 - - + -
158B ILE* 3.4 17.8 - - + +
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Residues in contact with GLN 125 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A VAL* 3.2 12.6 + - + +
122A THR* 3.1 12.9 + - - +
123A LEU 3.0 0.8 - - - -
124A LYS* 1.3 76.9 - - - +
126A ARG* 1.3 64.4 + - + +
128A ALA* 3.7 6.7 - - - +
129A THR* 3.3 25.5 + - - +
199A GLN* 3.2 34.1 + - - +
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Residues in contact with ARG 126 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A THR* 3.1 33.5 + - - +
123A LEU* 3.1 12.4 + - + +
125A GLN* 1.3 74.0 - - + +
127A VAL* 1.3 65.9 + - - +
129A THR* 3.1 22.1 - - - +
130A GLN* 3.3 13.1 + - - +
97C GLU* 2.6 35.6 + - - -
100C ILE* 3.9 35.9 - - + +
101C LEU* 5.2 10.5 - - - +
104C GLU* 5.2 4.9 - - - +
----------------------------------------------------------
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Residues in contact with VAL 127 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123A LEU* 3.0 22.9 + - + +
124A LYS* 4.0 5.2 - - - +
126A ARG* 1.3 72.1 - - + +
128A ALA* 1.3 58.1 + - - +
129A THR 3.0 1.8 - - - -
130A GLN* 2.8 30.5 + - - +
131A VAL* 2.8 27.4 + - + +
157B TYR* 4.1 19.1 - - + -
158B ILE* 4.2 14.6 - - + -
161B ASN* 4.2 15.3 - - + -
162B LEU* 3.9 33.7 - - + -
166B ILE* 4.5 3.8 - - + -
100C ILE* 5.7 2.7 - - + -
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Residues in contact with ALA 128 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124A LYS 3.1 18.8 + - - +
125A GLN* 3.7 15.5 - - - +
127A VAL* 1.3 77.8 - - - +
129A THR* 1.3 56.4 + - - +
131A VAL* 3.5 4.5 + - - +
132A ASN* 2.9 43.2 + - - +
198A PHE 4.8 7.4 - - - +
199A GLN* 4.6 11.7 - - - +
157B TYR* 4.1 14.8 - - - +
----------------------------------------------------------
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Residues in contact with THR 129 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125A GLN* 3.3 19.7 + - - +
126A ARG* 3.1 16.5 + - - +
127A VAL 3.0 0.2 - - - -
128A ALA* 1.3 78.0 - - - +
130A GLN* 1.3 58.2 + - - +
132A ASN* 3.3 6.9 + - - +
133A ARG* 2.7 64.6 + - - +
104C GLU* 4.2 2.2 - - - +
----------------------------------------------------------
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Residues in contact with GLN 130 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126A ARG 3.5 14.1 + - - +
127A VAL* 2.8 15.5 + - - +
129A THR* 1.3 69.9 - - - +
131A VAL* 1.3 66.1 + - - +
133A ARG* 3.8 3.3 - - - +
134A ILE* 2.9 32.1 + - + +
162B LEU* 4.6 3.4 - - - +
166B ILE* 3.5 20.4 - - + +
100C ILE* 3.0 38.8 + - - +
103C HIS* 3.2 23.2 + - - +
104C GLU* 3.2 33.1 + - - +
107C ILE* 3.9 16.6 - - + -
----------------------------------------------------------
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Residues in contact with VAL 131 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127A VAL* 2.8 30.0 + - + +
128A ALA* 3.7 10.5 - - - +
130A GLN* 1.3 76.6 - - - +
132A ASN* 1.3 68.1 + - - +
134A ILE* 3.5 2.6 + - - +
135A LYS* 3.0 32.3 + - + +
194A MET* 3.7 47.4 - - + +
196A PRO* 6.4 1.3 - - + -
157B TYR* 4.5 5.4 - - - +
161B ASN* 4.2 17.0 - - - +
166B ILE* 4.4 5.8 - - + +
----------------------------------------------------------
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Residues in contact with ASN 132 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A ALA* 2.9 31.0 + - - +
129A THR* 3.6 6.7 - - - +
131A VAL* 1.3 83.6 - - - +
133A ARG* 1.3 66.7 + - - +
135A LYS* 3.1 9.8 + - - +
136A ALA* 2.9 24.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 133 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129A THR* 2.7 58.2 + - - +
130A GLN* 3.8 6.4 - - - +
132A ASN* 1.3 71.1 - - - +
134A ILE* 1.3 57.4 + - - +
136A ALA* 3.2 8.6 + - - +
137A LEU* 2.8 31.3 + - - +
104C GLU* 2.6 47.8 + - - -
107C ILE* 3.9 32.5 - - + +
108C GLN* 3.4 21.0 - - - +
----------------------------------------------------------
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Residues in contact with ILE 134 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130A GLN 2.9 23.1 + - - +
131A VAL* 3.7 4.0 - - - +
133A ARG* 1.3 73.4 - - - +
135A LYS* 1.3 61.3 + - - +
137A LEU* 3.1 9.3 + - + +
138A GLN* 2.8 31.1 + - + +
194A MET* 4.5 11.0 - - + -
166B ILE* 3.9 26.7 - - + +
169B SER* 3.8 23.1 - - - +
170B LEU* 3.6 27.6 - - + -
173B LEU* 3.8 14.5 - - + +
107C ILE* 3.8 22.4 - - + -
----------------------------------------------------------
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Residues in contact with LYS 135 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131A VAL* 3.0 23.8 + - + +
132A ASN* 3.1 10.7 + - - +
134A ILE* 1.3 76.7 - - - +
136A ALA* 1.3 64.1 + - - +
138A GLN* 3.4 24.9 + - - +
139A ASN* 3.0 48.6 + - - +
190A SER* 4.2 19.7 + - - +
194A MET* 5.9 6.7 - - + -
----------------------------------------------------------
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Residues in contact with ALA 136 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132A ASN 2.9 11.9 + - - +
133A ARG* 3.4 11.0 - - - +
135A LYS* 1.3 73.9 - - - +
137A LEU* 1.3 66.5 + - - +
139A ASN* 3.5 6.2 + - - +
140A SER* 3.0 25.2 + - - -
----------------------------------------------------------
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Residues in contact with LEU 137 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133A ARG 2.8 15.3 + - - +
134A ILE* 3.1 14.8 + - + +
136A ALA* 1.3 76.3 - - - +
138A GLN* 1.3 58.7 + - - +
140A SER* 2.8 7.9 + - - -
141A ILE* 2.8 36.7 + - + +
170B LEU* 5.9 1.1 - - + -
173B LEU* 4.1 18.8 - - + -
177B ILE* 4.9 4.0 - - + -
107C ILE* 4.9 8.1 - - + +
110C LEU* 4.4 20.9 - - + -
111C THR* 3.9 27.4 - - + +
114C HIS* 3.8 39.3 - - + +
----------------------------------------------------------
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Residues in contact with GLN 138 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134A ILE* 2.8 21.1 + - + +
135A LYS* 3.6 25.9 + - - +
136A ALA 3.3 0.2 - - - -
137A LEU* 1.3 72.8 - - - +
139A ASN* 1.3 67.9 + - - +
141A ILE* 3.3 3.7 + - - +
142A GLN* 2.8 28.1 + - + +
186A LEU* 3.9 23.3 - - + +
189A ALA* 4.1 11.6 + - + +
190A SER* 2.9 46.3 + - - +
169B SER* 5.4 3.0 + - - -
173B LEU* 4.3 20.7 - - + +
----------------------------------------------------------
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Residues in contact with ASN 139 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A LYS* 3.0 39.2 + - - +
136A ALA* 4.1 5.2 - - - +
138A GLN* 1.3 90.2 - - - +
140A SER* 1.3 62.7 + - - +
142A GLN* 3.4 10.1 - - + +
143A GLU* 3.3 29.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 140 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136A ALA 3.0 13.5 + - - -
137A LEU* 2.8 12.2 + - - -
139A ASN* 1.3 76.2 - - - +
141A ILE* 1.3 65.1 + - - +
143A GLU* 3.4 15.1 + - - +
144A GLN* 3.2 21.0 + - - +
114C HIS* 2.8 31.0 + - - -
----------------------------------------------------------
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Residues in contact with ILE 141 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137A LEU* 2.8 26.1 + - + +
138A GLN* 3.7 5.2 - - - +
140A SER* 1.3 68.9 - - - +
142A GLN* 1.3 66.6 - - - +
144A GLN* 2.9 10.5 + - - +
145A VAL* 2.9 23.0 + - + +
186A LEU* 4.2 8.5 - - + -
173B LEU* 3.5 31.9 - - + +
176B VAL* 3.5 27.4 - - + -
177B ILE* 3.6 29.6 - - + -
180B LEU* 3.8 13.7 - - + -
114C HIS* 3.7 21.1 - - + -
----------------------------------------------------------
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Residues in contact with GLN 142 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138A GLN* 2.8 19.7 + - + +
139A ASN* 3.4 13.9 - - - +
141A ILE* 1.3 76.1 - - - +
143A GLU* 1.3 60.1 + - + +
145A VAL* 2.8 22.3 + - - +
146A VAL* 3.0 29.5 + - + +
183A GLN* 3.2 27.1 - - - +
186A LEU* 3.0 32.0 - - + +
187A THR* 5.4 2.8 - - - +
----------------------------------------------------------
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Residues in contact with GLU 143 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139A ASN* 3.3 13.8 + - - +
140A SER* 3.4 20.0 + - - +
142A GLN* 1.3 79.9 - - + +
144A GLN* 1.3 56.1 + - - +
146A VAL* 3.6 14.7 - - + +
147A GLU* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with GLN 144 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140A SER 3.2 12.2 + - - +
141A ILE* 2.9 14.0 + - - +
143A GLU* 1.3 77.9 - - - +
145A VAL* 1.3 55.8 + - - +
147A GLU* 3.3 9.8 + - - +
148A MET* 2.9 34.7 + - + +
180B LEU* 3.4 25.3 - - + +
114C HIS* 3.3 27.5 + - - -
117C ASN* 3.8 9.7 - - - +
118C SER* 2.9 43.4 + - - +
121C ILE* 3.3 25.3 - - + +
----------------------------------------------------------
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Residues in contact with VAL 145 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141A ILE* 2.9 15.8 + - + +
142A GLN* 2.8 11.7 + - - +
144A GLN* 1.3 74.0 - - - +
146A VAL* 1.3 66.6 + - - +
148A MET* 3.5 6.6 + - - +
149A LYS* 3.3 27.5 + - - +
179A TYR* 4.3 22.7 - - + -
182A ILE* 3.5 29.4 - - + -
183A GLN* 3.8 25.6 - - - +
186A LEU* 4.4 8.5 - - + -
180B LEU* 4.4 17.5 - - + -
----------------------------------------------------------
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Residues in contact with VAL 146 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142A GLN* 3.0 30.5 + - + +
143A GLU* 3.6 14.8 - - + +
145A VAL* 1.3 77.4 - - + +
147A GLU* 1.3 63.1 + - - +
149A LYS* 3.2 27.6 - - + +
150A ARG* 3.4 21.4 + - - +
183A GLN* 5.5 1.3 - - - +
428B TRP* 6.4 2.9 - - + -
429B ASP* 4.6 1.5 - - + +
----------------------------------------------------------
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Residues in contact with GLU 147 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A GLU 2.9 17.8 + - - +
144A GLN* 3.6 9.7 - - - +
146A VAL* 1.3 76.2 - - - +
148A MET* 1.3 61.8 + - - +
150A ARG* 3.0 29.6 + - - +
151A LEU* 2.8 30.8 + - + +
121C ILE* 4.0 19.7 - - + +
125C LYS* 2.8 40.2 + - - -
----------------------------------------------------------
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Residues in contact with MET 148 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144A GLN 2.9 21.2 + - - +
145A VAL 3.9 2.7 - - - +
146A VAL 3.5 0.2 - - - -
147A GLU* 1.3 76.1 - - - +
149A LYS* 1.3 55.1 + - - +
151A LEU* 2.7 24.5 + - - -
152A GLU* 2.6 33.4 + - - +
179A TYR* 3.5 33.9 - - + +
180B LEU* 4.0 17.0 - - + -
183B LYS* 4.8 3.4 - - + -
184B ILE* 3.4 33.0 - - + +
187B LEU* 4.2 20.6 - - + -
121C ILE* 4.0 25.4 - - + -
124C LEU* 4.5 4.5 - - + -
----------------------------------------------------------
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Residues in contact with LYS 149 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145A VAL* 3.3 16.4 + - + +
146A VAL* 3.2 26.7 - - + +
148A MET* 1.3 78.2 - - - +
150A ARG* 1.3 60.4 + - - +
152A GLU* 4.3 2.0 - - - +
153A VAL* 3.4 25.1 + - - +
179A TYR* 3.7 44.2 - - + +
183A GLN* 5.4 5.6 - - - +
429B ASP* 3.1 48.9 - - + +
430B MET* 4.2 8.0 - - + +
----------------------------------------------------------
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Residues in contact with ARG 150 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146A VAL* 3.4 16.7 + - - +
147A GLU* 3.0 42.4 + - - +
148A MET 3.0 0.6 - - - -
149A LYS* 1.3 80.0 - - - +
151A LEU* 1.3 58.5 + - - +
153A VAL* 3.6 5.5 + - - +
154A ASP* 3.1 24.9 + - - +
428B TRP* 5.2 1.6 - - - -
429B ASP* 3.3 23.8 - - - +
430B MET 3.8 11.8 - - - +
431B ALA 3.4 25.1 - - - +
432B LYS* 3.9 21.6 + - + +
434B GLY* 5.5 0.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 151 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147A GLU* 2.8 19.7 + - + +
148A MET* 2.7 26.3 + - + +
150A ARG* 1.3 70.6 - - - +
152A GLU* 1.3 65.8 + - - +
154A ASP* 2.9 15.2 + - + +
155A ILE* 2.9 43.3 + - + +
187B LEU* 6.0 0.7 - - + -
121C ILE* 4.0 19.1 - - + +
124C LEU* 4.0 30.7 - - + -
125C LYS* 4.1 26.2 - - + -
128C ILE* 5.7 1.3 - - + -
----------------------------------------------------------
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Residues in contact with GLU 152 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148A MET* 2.6 19.0 + - + +
149A LYS* 4.6 2.4 - - - +
151A LEU* 1.3 71.4 - - - +
153A VAL* 1.3 63.5 + - - +
155A ILE* 3.0 7.6 + - - +
156A ASP* 2.9 21.9 + - - +
172A TYR* 3.0 32.3 + - + +
174A VAL* 3.4 36.2 - - + +
175A ASP* 3.8 14.1 + - - +
179A TYR* 3.1 34.5 + - + +
183B LYS* 5.2 3.9 + - - +
187B LEU* 3.8 23.2 - - + +
----------------------------------------------------------
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Residues in contact with VAL 153 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149A LYS 3.4 15.9 + - - +
150A ARG 3.6 8.9 + - - +
151A LEU 3.2 0.6 - - - -
152A GLU* 1.3 79.3 - - - +
154A ASP* 1.3 62.9 + - - +
156A ASP* 3.2 7.7 + - + +
157A ILE* 2.9 46.4 + - + +
174A VAL* 4.3 18.4 - - + -
419B ARG* 5.5 0.4 - - - +
421B TYR* 3.8 21.5 - - + -
430B MET* 3.5 37.9 - - + +
----------------------------------------------------------
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Residues in contact with ASP 154 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A ARG 3.1 14.3 + - - +
151A LEU* 2.9 21.4 + - + +
153A VAL* 1.3 75.1 - - - +
155A ILE* 1.3 58.5 + - - +
157A ILE* 3.9 0.3 - - - +
158A LYS* 2.7 74.2 + - - +
419B ARG* 3.1 24.5 + - - +
432B LYS* 3.0 35.4 + - + +
128C ILE* 4.4 6.6 - - - +
----------------------------------------------------------
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Residues in contact with ILE 155 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151A LEU* 2.9 40.6 + - + +
152A GLU 3.4 5.4 - - - +
154A ASP* 1.3 73.2 - - - +
156A ASP* 1.3 58.8 + - - +
158A LYS 3.2 0.5 + - - -
159A ILE* 2.6 64.2 + - + +
172A TYR* 5.5 0.2 - - + -
187B LEU* 3.9 28.0 - - + -
191B ILE* 3.6 24.0 - - + -
124C LEU* 4.5 7.0 - - + +
128C ILE* 3.1 36.3 - - + -
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Residues in contact with ASP 156 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152A GLU 2.9 6.5 + - - +
153A VAL* 3.4 7.6 - - + +
155A ILE* 1.3 76.3 - - - +
157A ILE* 1.3 66.3 + - - +
159A ILE* 4.0 3.6 - - - +
160A ARG* 2.7 59.8 + - - +
172A TYR* 3.0 36.5 - - + +
173A GLN* 3.4 14.6 + - - -
174A VAL* 3.4 29.8 + - + +
422B TRP* 4.4 7.7 + - - +
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Residues in contact with ILE 157 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153A VAL* 2.9 38.6 + - + +
154A ASP 3.9 2.7 - - - +
156A ASP* 1.3 77.6 - - - +
158A LYS* 1.3 66.2 + - + +
160A ARG* 3.5 9.7 + - - +
161A ALA* 3.2 20.5 + - + +
263B GLY 4.6 1.2 - - - +
419B ARG* 3.7 50.7 - - + +
420B TYR* 3.7 32.5 - - + +
421B TYR* 4.3 15.7 - - + -
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Residues in contact with LYS 158 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154A ASP* 2.7 49.5 + - - +
157A ILE* 1.3 79.0 - - + +
159A ILE* 1.3 66.1 + - - +
161A ALA* 3.2 19.6 + - - +
162A CYS* 3.8 10.4 + - - -
419B ARG* 5.1 8.7 - - - +
432B LYS* 4.4 12.1 - - - +
128C ILE* 3.4 38.8 - - + +
129C ALA* 5.9 0.8 - - - +
131C LEU* 5.7 0.2 - - - +
132C GLU* 3.4 45.0 + - + +
135C CYS* 5.3 0.5 - - - +
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Residues in contact with ILE 159 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155A ILE* 2.6 47.3 + - + +
156A ASP* 4.0 4.3 - - - +
158A LYS* 1.3 72.1 - - - +
160A ARG* 1.3 63.7 + - + +
162A CYS* 3.1 25.1 + - - +
163A LYS 4.2 1.2 + - - -
169A SER* 5.5 1.0 + - - -
170A PHE* 3.9 22.4 - - + +
172A TYR* 4.5 13.5 - - + +
190B ALA* 3.6 39.0 - - + -
191B ILE* 3.9 3.8 - - + +
194B GLN* 3.9 18.5 - - + +
128C ILE* 4.8 2.0 - - + -
131C LEU* 4.5 16.8 - - + -
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Residues in contact with ARG 160 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156A ASP* 2.7 41.4 + - - +
157A ILE* 3.8 5.1 - - - +
158A LYS 3.2 0.2 - - - -
159A ILE* 1.3 77.0 - - - +
161A ALA* 1.3 58.1 + - - +
162A CYS 2.9 11.0 + - - -
163A LYS* 3.0 27.6 + - + +
169A SER* 5.7 2.7 - - - -
170A PHE 5.7 1.3 - - - -
171A ASP* 4.9 4.9 + - - -
172A TYR 3.1 13.9 + - - -
173A GLN* 2.9 29.9 - - - +
262B ASP 3.1 22.7 - - - +
263B GLY* 3.0 27.8 - - - +
264B SER* 3.4 1.0 - - - -
420B TYR* 4.2 13.6 + - - -
422B TRP* 3.5 32.8 - - - +
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Residues in contact with ALA 161 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A ILE* 3.2 12.7 + - + +
158A LYS* 3.2 16.3 + - + +
160A ARG* 1.3 74.6 - - - +
162A CYS* 1.3 56.8 + - - +
164A GLY 4.2 0.3 + - - -
165A SER* 4.2 3.6 + - - -
263B GLY 3.4 6.0 + - - +
264B SER 2.9 21.8 - - - +
265B VAL* 4.1 5.2 - - - +
266B ASN* 3.9 31.6 - - + +
135C CYS* 3.8 17.9 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il