Contacts of the helix formed by residues 356 - 475 (chain A) in PDB entry 1MH3
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 356 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with VAL 357 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ASP 358 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 359 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 360 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with LEU 361 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 362 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 363 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 364 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with GLN 365 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with THR 366 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 472 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 473 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 474 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 475 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 476 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ILE 477 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with SER 478 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with PRO 479 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with GLN 480 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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Residues in contact with ALA 481 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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477A ILE* 3.9 13.9 - - + -
478A SER* 3.1 23.8 + - - +
480A GLN* 1.3 78.1 - - - +
482A ARG* 1.3 57.3 + - - +
484A PHE* 3.0 5.7 + - - +
485A LEU* 2.9 32.6 + - - +
507A CYS* 3.8 35.1 - - + +
509A ILE* 5.0 7.9 - - + -
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Residues in contact with ARG 482 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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475A ALA* 5.4 2.6 - - - +
477A ILE* 2.7 54.2 + - + +
478A SER 2.8 17.6 + - - +
479A PRO* 3.7 9.2 - - - +
481A ALA* 1.3 72.0 - - - +
483A ALA* 1.3 63.2 + - - +
485A LEU* 3.2 8.5 + - - +
486A GLU* 2.9 32.0 + - + +
517A TRP* 4.9 16.5 - - + +
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Residues in contact with ALA 483 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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479A PRO 2.9 18.9 + - - +
480A GLN* 3.5 8.3 - - - +
482A ARG* 1.3 75.5 - - - +
484A PHE* 1.3 62.3 + - - +
486A GLU* 3.3 7.6 + - - +
487A GLN* 3.0 22.2 + - - +
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Residues in contact with PHE 484 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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49A GLN* 6.3 3.1 - - + -
480A GLN 3.1 11.1 + - - +
481A ALA* 3.0 9.5 + - - +
483A ALA* 1.3 77.3 - - - +
485A LEU* 1.3 63.7 + - - +
487A GLN* 3.1 11.0 + - + +
488A VAL* 3.1 44.0 + - + +
503A VAL* 3.9 28.9 - - + -
506A LYS* 3.9 34.5 - - + -
507A CYS* 3.8 24.7 - - + -
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Residues in contact with LEU 485 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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477A ILE* 4.2 23.8 - - + -
481A ALA 2.9 18.8 + - - +
482A ARG* 3.5 7.6 - - - +
484A PHE* 1.3 77.4 - - - +
486A GLU* 1.3 57.0 + - - +
488A VAL* 3.3 6.2 + - - +
489A PHE* 2.8 28.6 + - - +
503A VAL* 3.9 26.2 - - + -
507A CYS* 4.3 9.0 - - - -
509A ILE* 5.0 5.2 - - + -
514A VAL* 4.5 12.6 - - + -
517A TRP* 3.6 48.6 - - + +
518A PHE* 4.1 17.9 - - + -
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Residues in contact with GLU 486 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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482A ARG* 2.9 26.5 + - + +
483A ALA* 3.7 7.6 - - - +
485A LEU* 1.3 74.2 - - - +
487A GLN* 1.3 61.4 + - - +
489A PHE* 3.7 9.5 - - - +
490A ARG* 2.9 31.5 + - - +
517A TRP* 3.7 17.4 - - + -
521A LYS* 2.7 37.7 + - - -
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Residues in contact with GLN 487 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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483A ALA 3.0 13.3 + - - +
484A PHE* 3.1 16.6 + - + +
486A GLU* 1.3 77.3 - - - +
488A VAL* 1.3 66.1 + - + +
490A ARG* 3.5 11.9 + - - +
491A ARG* 3.6 10.7 + - - +
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Residues in contact with VAL 488 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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484A PHE* 3.1 42.7 + - + +
485A LEU* 3.6 7.4 - - - +
487A GLN* 1.3 75.1 - - + +
489A PHE* 1.3 61.3 + - - +
491A ARG* 2.9 7.8 + - - +
492A LYS* 2.8 28.5 + - + +
495A LEU* 4.0 24.0 - - + -
503A VAL* 4.4 11.2 - - + -
518A PHE* 3.9 19.3 - - + -
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Residues in contact with PHE 489 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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485A LEU 2.8 16.3 + - - +
486A GLU* 3.7 9.6 - - - +
488A VAL* 1.3 76.4 - - - +
490A ARG* 1.3 65.0 + - - +
491A ARG 3.2 0.7 + - - -
492A LYS 3.3 18.4 + - - -
493A GLN* 3.3 71.5 + - + +
517A TRP* 3.8 13.9 - + + -
518A PHE* 3.8 17.0 - + + -
521A LYS* 3.6 46.7 - - + -
522A ARG* 4.0 14.1 - - + -
524A ARG* 6.3 0.2 - - - -
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Residues in contact with ARG 490 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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486A GLU* 2.9 17.9 + - - +
487A GLN* 3.6 9.2 - - - +
488A VAL 3.2 0.2 - - - -
489A PHE* 1.3 79.3 - - - +
491A ARG* 1.3 57.6 + - - +
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Residues in contact with ARG 491 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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487A GLN 3.6 8.0 + - - +
488A VAL* 2.9 9.0 + - - +
489A PHE 4.0 0.2 - - - -
490A ARG* 1.3 81.5 - - - +
492A LYS* 1.3 63.3 + - + +
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Residues in contact with LYS 492 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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488A VAL* 2.8 18.1 + - + +
489A PHE* 3.3 10.3 + - - -
491A ARG* 1.3 82.2 - - + +
493A GLN* 1.3 61.9 + - - +
494A SER* 2.9 33.4 + - - +
495A LEU* 4.0 15.0 - - + +
496A ASN* 5.2 1.4 + - - -
499A GLU* 2.8 34.0 + - - +
518A PHE* 3.5 8.5 - - - -
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Residues in contact with GLN 493 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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489A PHE* 3.3 54.6 + - + +
492A LYS* 1.3 72.3 - - - +
494A SER* 1.3 51.3 + - - +
518A PHE* 3.4 9.3 - - - -
522A ARG* 2.7 42.5 + - - +
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Residues in contact with SER 494 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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492A LYS* 2.9 36.1 - - - +
493A GLN* 1.3 82.2 - - - +
495A LEU* 1.3 63.8 + - - +
518A PHE* 4.7 0.7 - - - -
522A ARG* 3.8 14.4 - - - +
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Residues in contact with LEU 495 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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488A VAL* 4.0 17.3 - - + -
492A LYS* 4.0 15.3 - - + +
494A SER* 1.3 84.7 - - - +
496A ASN* 1.3 61.2 + - - +
499A GLU* 3.4 22.7 - - + +
500A LYS* 2.9 45.7 + - + +
503A VAL* 3.8 25.4 - - + -
514A VAL* 4.5 1.1 - - + -
518A PHE* 3.4 39.7 - - + -
522A ARG* 4.9 2.0 - - - +
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Residues in contact with ASN 496 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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492A LYS* 5.2 0.9 + - - -
495A LEU* 1.3 75.3 - - - +
497A SER* 1.3 65.9 + - - +
498A LYS* 3.2 11.1 - - - +
499A GLU* 2.7 56.4 + - - +
500A LYS* 2.9 21.0 + - - +
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Residues in contact with SER 497 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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496A ASN* 1.3 74.0 - - - +
498A LYS* 1.3 73.8 + - - +
500A LYS* 3.1 17.2 + - - +
501A GLU* 2.9 24.0 + - - +
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Residues in contact with LYS 498 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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496A ASN* 3.2 10.1 - - - +
497A SER* 1.3 82.2 + - - +
499A GLU* 1.3 64.0 - - + +
501A GLU* 3.2 8.5 + - - +
502A GLU* 3.0 33.0 + - - +
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Residues in contact with GLU 499 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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492A LYS* 2.8 36.2 + - - +
495A LEU* 3.4 23.3 - - + -
496A ASN* 2.7 55.1 + - - +
498A LYS* 1.3 72.6 - - + +
500A LYS* 1.3 57.4 + - - +
502A GLU* 3.2 13.1 + - - +
503A VAL* 2.9 35.3 + - + +
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Residues in contact with LYS 500 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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495A LEU* 2.9 40.0 + - + -
496A ASN* 2.9 22.0 + - - +
497A SER* 3.5 13.6 - - - +
499A GLU* 1.3 77.4 - - - +
501A GLU* 1.3 62.3 + - - +
503A VAL* 3.4 2.3 + - - +
504A ALA* 3.0 24.0 + - - +
511A PRO* 4.9 7.6 - - + +
514A VAL* 4.0 24.9 - - + +
515A ARG* 3.5 57.4 - - + +
518A PHE* 5.7 2.9 - - + -
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Residues in contact with GLU 501 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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497A SER 2.9 13.3 + - - +
498A LYS* 3.5 11.7 - - - +
500A LYS* 1.3 74.8 - - - +
502A GLU* 1.3 64.1 + - - +
504A ALA* 3.3 8.4 + - - +
505A LYS* 3.1 41.0 + - + +
511A PRO* 5.0 12.3 - - + +
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Residues in contact with GLU 502 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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52A ALA* 3.9 20.1 - - + +
53A THR* 5.0 14.9 + - - -
498A LYS* 3.0 21.2 + - - +
499A GLU* 3.4 16.1 - - - +
501A GLU* 1.3 77.4 - - + +
503A VAL* 1.3 63.3 + - + +
505A LYS* 3.2 6.8 + - - +
506A LYS* 3.0 47.4 + - - +
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Residues in contact with VAL 503 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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484A PHE* 3.9 23.3 - - + -
485A LEU* 3.9 27.6 - - + -
488A VAL* 4.4 19.7 - - + -
495A LEU* 3.8 19.5 - - + -
499A GLU* 2.9 20.4 + - + +
500A LYS 3.8 4.3 - - - +
502A GLU* 1.3 76.6 - - + +
504A ALA* 1.3 54.6 + - - +
506A LYS* 3.4 3.6 + - + +
507A CYS* 2.8 38.1 + - - +
514A VAL* 4.1 13.0 - - + -
518A PHE* 5.2 0.7 - - + -
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Residues in contact with ALA 504 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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73A SER* 4.3 1.5 + - - -
500A LYS 3.0 13.2 + - - +
501A GLU 3.5 9.2 - - - +
502A GLU 3.2 0.2 - - - -
503A VAL* 1.3 77.4 - - - +
505A LYS* 1.3 54.9 + - + +
507A CYS* 3.2 2.2 + - - -
508A GLY* 2.7 31.9 + - - -
509A ILE 3.1 25.9 + - - +
511A PRO* 3.8 22.2 - - + -
514A VAL* 3.7 18.8 - - + +
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Residues in contact with LYS 505 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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48A PRO* 3.9 14.6 - - - +
51A ALA 5.4 0.7 - - - -
52A ALA* 3.6 37.7 - - + +
73A SER* 3.5 40.5 + - - +
74A GLY* 4.9 4.2 - - - -
75A LEU* 4.0 17.5 - - + +
501A GLU* 3.1 31.3 + - + +
502A GLU 3.2 5.8 + - - +
504A ALA* 1.3 79.3 - - + +
506A LYS* 1.3 61.9 + - - +
507A CYS 3.3 0.3 + - - -
508A GLY* 3.6 6.4 + - - -
511A PRO* 6.1 2.6 - - - +
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Residues in contact with LYS 506 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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48A PRO* 4.0 21.6 - - - +
49A GLN* 3.7 33.5 + - + +
52A ALA* 3.4 18.2 - - + -
53A THR* 5.6 3.8 - - - +
484A PHE* 3.9 32.1 - - + -
502A GLU* 3.0 39.1 + - - +
503A VAL* 3.8 4.5 - - + +
505A LYS* 1.3 76.2 - - - +
507A CYS* 1.3 60.3 + - - +
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Residues in contact with CYS 507 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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478A SER* 5.6 0.2 + - - -
481A ALA* 3.8 43.5 - - - +
484A PHE* 3.8 23.6 - - - -
485A LEU* 4.3 12.6 - - - -
503A VAL 2.8 20.0 + - - +
504A ALA 3.4 4.3 - - - +
506A LYS* 1.3 78.9 - - - +
508A GLY* 1.3 60.7 + - - +
509A ILE* 3.4 20.0 - - + -
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Residues in contact with GLY 508 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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69A GLY* 5.5 5.8 - - - -
73A SER* 4.2 14.6 - - - -
334A PRO* 5.0 13.2 - - - +
504A ALA 2.7 9.3 + - - -
505A LYS 3.6 4.0 + - - -
506A LYS 3.6 2.6 - - - -
507A CYS* 1.3 75.8 - - - +
509A ILE* 1.3 59.2 + - - +
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Residues in contact with ILE 509 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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73A SER* 5.0 2.9 + - - -
476A ALA 4.5 3.4 - - - +
477A ILE* 3.3 44.9 - - + -
481A ALA* 5.0 5.2 - - + -
485A LEU* 5.0 5.8 - - + -
504A ALA* 3.2 20.1 - - - +
507A CYS* 3.4 28.7 - - + +
508A GLY* 1.3 80.7 - - - +
510A THR* 1.3 63.2 + - - +
511A PRO* 4.0 1.4 - - - +
513A GLN* 2.7 43.3 - - + +
514A VAL* 3.5 23.6 - - + -
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Residues in contact with THR 510 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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72A GLN* 5.1 10.0 + - - +
504A ALA* 4.0 0.2 - - - -
509A ILE* 1.3 77.9 - - - +
511A PRO* 1.3 74.0 - - + +
512A LEU* 3.1 30.1 - - + +
513A GLN* 3.0 31.9 + - + +
514A VAL* 3.0 21.8 + - - +
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Residues in contact with PRO 511 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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500A LYS* 4.9 7.1 - - + +
501A GLU* 5.0 15.0 - - + +
504A ALA* 3.8 19.7 - - + -
505A LYS* 6.1 2.5 - - - +
509A ILE 4.0 3.8 - - - +
510A THR* 1.3 89.7 - - + +
512A LEU* 1.3 58.7 + - + +
514A VAL* 3.4 5.2 + - + +
515A ARG* 3.0 26.6 + - - +
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Residues in contact with LEU 512 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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510A THR* 3.1 13.5 - - + +
511A PRO* 1.3 76.0 - - + +
513A GLN* 1.3 61.8 + - - +
515A ARG* 3.6 20.3 - - + +
516A VAL* 2.9 43.6 + - + +
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Residues in contact with GLN 513 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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476A ALA* 3.0 37.1 + - - +
477A ILE* 3.8 9.7 - - + +
509A ILE* 2.7 38.7 - - + +
510A THR* 3.0 31.1 + - + +
512A LEU* 1.3 80.4 - - + +
514A VAL* 1.3 61.8 + - - +
516A VAL* 3.9 3.6 - - - +
517A TRP* 2.9 25.7 + - - +
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Residues in contact with VAL 514 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485A LEU* 4.5 7.0 - - + -
495A LEU* 4.5 0.4 - - + -
500A LYS* 4.0 28.0 - - + +
503A VAL* 4.1 15.0 - - + -
504A ALA* 3.7 22.4 - - + +
509A ILE* 3.5 22.4 - - + +
510A THR 3.0 17.9 + - - +
511A PRO 3.5 7.6 - - - +
512A LEU 3.2 0.2 - - - -
513A GLN* 1.3 77.0 - - - +
515A ARG* 1.3 63.8 + - - +
517A TRP* 3.3 4.6 + - - +
518A PHE* 3.1 48.7 + - + -
----------------------------------------------------------
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Residues in contact with ARG 515 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500A LYS* 3.5 42.7 - - + +
511A PRO 3.0 16.8 + - - +
512A LEU* 3.3 21.3 + - - +
514A VAL* 1.3 79.4 - - - +
516A VAL* 1.3 64.4 + - + +
518A PHE* 3.4 5.2 + - - +
519A ILE* 3.1 38.1 + - + +
----------------------------------------------------------
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Residues in contact with VAL 516 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512A LEU* 2.9 32.0 + - + +
513A GLN* 4.2 3.6 - - - +
515A ARG* 1.3 73.9 - - + +
517A TRP* 1.3 60.9 + - - +
519A ILE* 3.2 13.4 + - + +
520A ASN* 2.8 49.7 + - - +
----------------------------------------------------------
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Residues in contact with TRP 517 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477A ILE* 3.9 17.0 - - + -
482A ARG* 4.9 14.5 - - + +
485A LEU* 3.6 60.5 - - + +
486A GLU* 3.7 26.5 - - + -
489A PHE* 3.8 25.4 - + + -
513A GLN 2.9 19.0 + - - +
514A VAL* 3.5 4.3 - - - +
516A VAL* 1.3 77.7 - - - +
518A PHE* 1.3 83.4 + + - +
520A ASN* 3.7 6.5 - - + +
521A LYS* 2.8 52.4 + - + +
----------------------------------------------------------
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Residues in contact with PHE 518 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485A LEU* 4.1 9.9 - - + -
488A VAL* 3.9 16.4 - - + -
489A PHE* 3.8 20.4 - + - -
492A LYS 3.5 22.4 - - - -
493A GLN 3.4 19.5 - - - -
494A SER* 4.5 0.9 - - - -
495A LEU* 3.4 36.3 - - + +
500A LYS* 5.7 2.2 - - + -
503A VAL* 5.2 0.7 - - + -
514A VAL* 3.1 34.9 + - + +
515A ARG* 3.7 9.0 - - - +
516A VAL 3.2 0.2 - - - -
517A TRP* 1.3 103.3 - + - +
519A ILE* 1.3 61.6 + - - +
521A LYS* 3.2 3.5 + - - +
522A ARG* 3.0 41.7 + - - +
----------------------------------------------------------
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Residues in contact with ILE 519 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
515A ARG* 3.1 36.9 + - + +
516A VAL* 3.2 17.0 + - + +
518A PHE* 1.3 75.3 - - - +
520A ASN* 1.3 65.1 + - - +
522A ARG* 3.1 25.5 + - - +
523A MET* 3.1 44.3 + - + +
----------------------------------------------------------
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Residues in contact with ASN 520 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516A VAL* 2.8 45.3 + - - +
517A TRP* 3.7 6.9 - - + +
519A ILE* 1.3 76.7 - - - +
521A LYS* 1.3 61.0 + - - +
522A ARG 3.4 0.7 + - - -
523A MET* 3.5 23.9 + - - +
524A ARG* 4.9 1.2 + - - -
----------------------------------------------------------
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Residues in contact with LYS 521 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486A GLU* 2.7 36.5 + - - -
489A PHE* 3.6 37.2 - - + -
517A TRP* 2.8 39.2 + - + +
518A PHE* 3.5 9.2 - - - +
520A ASN* 1.3 78.8 - - - +
522A ARG* 1.3 57.3 + - - +
523A MET 3.5 0.2 - - - -
524A ARG* 3.1 20.4 + - - -
----------------------------------------------------------
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Residues in contact with ARG 522 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
489A PHE* 4.0 15.3 - - + -
493A GLN* 2.7 48.1 + - + +
494A SER* 3.8 14.9 - - - +
495A LEU 4.9 1.0 - - - +
518A PHE* 3.0 35.0 + - - +
519A ILE* 3.1 30.0 + - - +
521A LYS* 1.3 75.0 - - - +
523A MET* 1.3 68.0 + - - +
524A ARG* 3.3 21.0 + - - +
----------------------------------------------------------
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Residues in contact with MET 523 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519A ILE* 3.1 36.1 + - + +
520A ASN* 3.5 23.2 + - - +
522A ARG* 1.3 76.1 - - - +
524A ARG* 1.3 90.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 524 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
489A PHE* 6.3 0.4 - - - -
520A ASN 4.9 1.4 + - - -
521A LYS 3.1 22.2 + - - -
522A ARG* 3.3 19.0 + - - +
523A MET* 1.3 97.9 + - - +
525A SER* 1.3 62.1 + - - +
526A LYS* 4.9 7.0 - - + +
----------------------------------------------------------
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Residues in contact with SER 525 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
524A ARG* 1.3 77.4 - - - +
526A LYS* 1.3 82.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 526 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
524A ARG* 4.9 6.3 - - + +
525A SER* 1.3 95.5 + - - +
----------------------------------------------------------
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Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with 0 (chain ).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A LYS* 1.3 62.0 - - - -
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il