Contacts of the helix formed by residues 92 - 121 (chain C) in PDB entry 1N1Q
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 92 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35C ASN* 5.9 1.3 - - - -
90C GLY 3.5 2.5 + - - -
91C GLU* 1.3 74.7 - - - +
93C ALA* 1.3 65.7 + - - +
94C ALA* 3.6 7.0 + - - +
95C GLU* 3.0 39.0 + - - +
96C MET* 2.9 21.0 + - - +
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Residues in contact with ALA 93 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34C VAL* 3.8 21.8 - - + -
35C ASN* 3.6 28.9 + - - +
38C ASN* 5.7 3.1 - - + -
42C LEU* 3.9 12.1 - - + +
92C SER* 1.3 73.1 - - - +
94C ALA* 1.3 62.6 + - - +
96C MET* 3.2 9.4 + - - +
97C VAL* 3.2 26.5 + - - +
147C PHE* 5.8 0.9 - - + -
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Residues in contact with ALA 94 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92C SER* 3.2 7.0 + - - +
93C ALA* 1.3 78.2 - - - +
95C GLU* 1.3 59.7 + - + +
97C VAL* 3.4 5.0 + - - +
98C SER* 2.9 30.1 + - - -
147C PHE* 5.3 4.0 - - + -
148C LEU* 3.8 20.9 - - + +
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Residues in contact with GLU 95 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90C GLY 4.1 3.3 - - - +
91C GLU* 3.6 16.9 - - + +
92C SER* 3.0 39.1 + - - +
94C ALA* 1.3 74.7 - - + +
96C MET* 1.3 57.0 + - - +
98C SER* 3.7 7.4 - - - -
99C SER* 2.8 34.7 + - - -
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Residues in contact with MET 96 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29C ASN* 5.1 0.7 - - - +
30C PHE* 3.6 47.4 - - + -
33C ASN* 3.6 17.0 - - + +
34C VAL* 3.4 51.1 - - - +
46C PHE* 3.8 15.0 - - + -
91C GLU* 3.4 28.9 - - + +
92C SER 2.9 15.5 + - - +
93C ALA* 3.4 6.7 - - - +
94C ALA 3.2 0.2 - - - -
95C GLU* 1.3 74.4 - - - +
97C VAL* 1.3 65.1 + - - +
99C SER* 3.1 4.0 + - - -
100C VAL* 3.0 27.1 + - - +
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Residues in contact with VAL 97 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42C LEU* 3.9 22.2 - - + -
46C PHE* 4.5 7.2 - - + -
93C ALA 3.2 14.6 + - - +
94C ALA* 3.7 5.6 - - - +
96C MET* 1.3 74.9 - - - +
98C SER* 1.3 64.0 + - - +
100C VAL* 3.1 9.8 + - - +
101C VAL* 3.0 21.8 + - - +
144C LEU* 3.6 45.8 - - + +
147C PHE* 3.8 24.9 - - + -
148C LEU* 3.7 14.8 - - + -
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Residues in contact with SER 98 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94C ALA 2.9 18.6 + - - -
95C GLU* 3.7 8.5 - - - -
97C VAL* 1.3 76.8 - - - +
99C SER* 1.3 58.3 + - - +
101C VAL* 3.3 5.4 + - - +
102C ASN* 3.0 39.5 + - - +
148C LEU* 3.8 18.5 - - - +
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Residues in contact with SER 99 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C LYS* 3.5 29.1 + - - -
30C PHE* 3.8 13.2 - - - -
91C GLU* 5.4 4.3 + - - -
95C GLU 2.8 19.5 + - - -
96C MET 3.1 5.8 + - - -
98C SER* 1.3 74.9 - - - +
100C VAL* 1.3 60.0 + - - +
102C ASN* 3.2 10.0 + - - +
103C ASP* 2.9 31.9 + - - +
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Residues in contact with VAL 100 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C LEU* 6.2 2.0 - - + -
27C LEU* 4.1 11.7 - - + -
30C PHE* 4.0 13.5 - - + -
46C PHE* 4.0 24.0 - - + -
49C LEU* 4.1 7.0 - - + -
96C MET 3.0 14.2 + - - +
97C VAL* 3.6 6.1 - - - +
99C SER* 1.3 73.4 - - - +
101C VAL* 1.3 61.3 + - - +
103C ASP* 4.4 6.5 - - - +
104C PHE* 2.8 57.5 + - + +
144C LEU* 3.6 24.2 - - + -
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Residues in contact with VAL 101 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97C VAL 3.0 19.0 + - - +
98C SER* 3.4 9.9 - - - +
100C VAL* 1.3 78.8 - - - +
102C ASN* 1.3 62.3 + - - +
104C PHE* 3.9 3.2 - - - +
105C VAL* 2.8 44.7 + - + +
141C VAL* 4.6 7.0 - - + +
144C LEU* 3.5 32.5 - - + -
145C GLU* 3.9 36.1 - - + +
148C LEU* 4.4 7.0 - - + -
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Residues in contact with ASN 102 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98C SER* 3.0 31.0 + - - +
99C SER* 3.2 10.7 + - - +
101C VAL* 1.3 82.1 - - - +
103C ASP* 1.3 66.2 + - - +
105C VAL* 3.3 6.8 + - - +
106C ASP* 3.0 23.4 + - - +
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Residues in contact with ASP 103 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C LEU* 3.8 10.5 - - + +
26C LYS* 2.7 40.9 + - - +
30C PHE* 5.8 0.3 - - - -
84C ILE* 3.6 27.8 - - + +
85C LYS* 5.1 2.9 + - - +
99C SER* 2.9 21.4 + - - +
100C VAL* 3.8 6.4 - - - +
102C ASN* 1.3 79.2 - - - +
104C PHE* 1.3 62.2 + - + +
106C ASP* 3.1 8.1 + - - +
107C LEU* 2.9 32.9 + - - +
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Residues in contact with PHE 104 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20C TRP* 3.8 27.8 - + - -
23C LEU* 4.5 11.4 - - + -
27C LEU* 5.3 3.6 - - + -
49C LEU* 4.2 21.1 - - + -
100C VAL* 2.8 45.7 + - + +
103C ASP* 1.3 77.5 - - + +
105C VAL* 1.3 58.1 + - - +
107C LEU* 3.3 12.3 + - + +
108C VAL* 2.9 34.2 + - - +
137C LEU* 3.7 30.8 - - + +
140C HIS* 3.7 35.0 - + + -
141C VAL* 3.7 17.7 - - + -
144C LEU* 4.5 4.7 - - + -
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Residues in contact with VAL 105 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101C VAL* 2.8 41.9 + - + +
102C ASN* 3.6 6.7 - - - +
104C PHE* 1.3 76.2 - - - +
106C ASP* 1.3 64.4 + - - +
108C VAL* 3.4 9.8 + - + +
109C GLY* 3.3 17.0 + - - -
141C VAL* 4.3 17.9 - - + -
145C GLU* 5.0 2.7 - - - +
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Residues in contact with ASP 106 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C SER* 3.8 19.2 + - - +
84C ILE* 5.3 3.1 - - + +
102C ASN 3.0 13.6 + - - +
103C ASP* 3.1 11.4 + - - +
105C VAL* 1.3 77.4 - - - +
107C LEU* 1.3 64.5 + - + +
109C GLY* 3.1 4.6 + - - -
110C GLU* 3.0 41.9 + - - +
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Residues in contact with LEU 107 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16C GLN* 3.5 9.9 - - - +
19C ASN* 3.4 30.3 - - + +
20C TRP* 3.6 38.1 - - + +
23C LEU* 3.6 20.4 - - + -
83C SER* 4.9 0.7 - - - +
84C ILE* 3.6 15.0 - - + -
103C ASP 2.9 16.5 + - - +
104C PHE* 3.6 10.8 - - + +
106C ASP* 1.3 75.6 - - + +
108C VAL* 1.3 54.5 + - - +
110C GLU* 3.1 8.8 + - - +
111C LEU* 2.7 44.0 + - + +
137C LEU* 3.7 12.6 - - + -
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Residues in contact with VAL 108 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104C PHE 2.9 22.2 + - - +
105C VAL* 3.6 9.9 - - + +
106C ASP 3.3 0.2 - - - -
107C LEU* 1.3 75.0 - - - +
109C GLY* 1.3 63.8 + - - +
111C LEU* 3.3 8.4 + - - +
112C LYS* 3.0 48.6 + - - +
134C GLU* 4.1 9.3 - - + -
137C LEU* 4.0 19.5 - - + -
138C GLU* 3.8 35.2 - - + +
141C VAL* 5.3 2.2 - - + -
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Residues in contact with GLY 109 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105C VAL 3.3 6.8 + - - -
106C ASP 3.1 7.4 + - - -
108C VAL* 1.3 82.4 - - - +
110C GLU* 1.3 60.7 + - - +
112C LYS* 3.3 14.4 + - - +
113C VAL* 3.3 25.0 + - - +
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Residues in contact with GLU 110 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15C ARG* 3.5 25.0 + - - +
16C GLN* 2.9 30.4 + - - +
19C ASN* 3.0 15.8 + - - -
83C SER* 2.6 29.3 + - - -
106C ASP* 3.0 30.4 + - - +
107C LEU* 3.7 8.7 - - - +
109C GLY* 1.3 75.7 - - - +
111C LEU* 1.3 58.6 + - - +
113C VAL* 3.3 8.1 + - - +
114C ALA* 2.9 30.0 + - - +
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Residues in contact with LEU 111 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16C GLN* 4.3 21.3 - - + +
20C TRP* 5.9 1.6 - - - +
60C LEU* 6.0 0.4 - - + -
107C LEU* 2.7 29.1 + - + +
108C VAL 3.7 4.5 - - - +
110C GLU* 1.3 73.3 - - - +
112C LYS* 1.3 57.5 + - - +
114C ALA* 3.8 3.2 - - + +
115C ARG* 2.9 37.3 + - - +
130C LEU* 3.8 38.6 - - + +
133C ILE* 3.6 23.1 - - + -
134C GLU* 3.6 40.6 - - + +
137C LEU* 3.9 11.9 - - + -
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Residues in contact with LYS 112 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108C VAL* 3.0 39.2 + - + +
109C GLY* 3.6 12.3 - - - +
110C GLU 3.2 0.2 - - - -
111C LEU* 1.3 77.3 - - - +
113C VAL* 1.3 62.0 + - + +
115C ARG* 3.7 17.0 + - - +
116C ASP* 3.1 22.7 + - - +
134C GLU* 3.7 20.2 - - - +
138C GLU* 4.4 3.7 + - - -
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Residues in contact with VAL 113 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5C ILE* 4.2 27.6 - - + -
6C GLN 5.9 0.4 - - - +
12C LEU* 5.3 9.4 - - + -
109C GLY 3.3 11.8 + - - +
110C GLU* 3.3 11.0 + - - +
112C LYS* 1.3 78.4 - - + +
114C ALA* 1.3 63.1 + - - +
116C ASP* 3.2 7.9 + - - +
117C VAL* 3.1 29.3 + - + +
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Residues in contact with ALA 114 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C VAL* 6.0 0.2 - - - +
12C LEU* 4.1 36.5 - - + +
13C LEU* 5.9 0.2 - - + -
16C GLN* 5.6 5.8 - - + +
110C GLU 2.9 17.0 + - - +
111C LEU* 3.8 5.6 - - + +
113C VAL* 1.3 77.2 - - - +
115C ARG* 1.3 58.5 + - - +
117C VAL* 3.2 3.6 + - - +
118C ALA* 2.8 29.1 + - - +
130C LEU* 3.7 23.4 - - + +
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Residues in contact with ARG 115 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111C LEU 2.9 21.3 + - - +
112C LYS* 3.7 19.4 - - - +
113C VAL 3.3 0.2 - - - -
114C ALA* 1.3 76.9 - - - +
116C ASP* 1.3 52.9 + - - +
118C ALA* 3.2 4.8 + - - +
119C ASP* 2.7 48.3 + - - +
127C ALA* 3.7 15.7 + - + +
130C LEU* 3.6 25.1 - - + -
131C ASP* 3.9 35.7 + - - +
134C GLU* 2.8 42.6 + - - -
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Residues in contact with ASP 116 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112C LYS 3.1 11.2 + - - +
113C VAL* 3.2 11.4 + - - +
115C ARG* 1.3 79.4 - - - +
117C VAL* 1.3 64.0 + - - +
119C ASP* 3.4 9.4 + - - +
120C GLU* 3.0 28.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 117 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5C ILE* 5.0 8.1 - - + -
6C GLN 3.7 10.5 - - - +
7C GLN* 3.6 32.1 - - + +
9C VAL* 4.4 8.3 - - + -
12C LEU* 3.5 33.4 - - + -
113C VAL* 3.1 20.2 + - + +
114C ALA 3.2 2.9 + - - +
116C ASP* 1.3 80.9 - - - +
118C ALA* 1.3 64.0 + - - +
120C GLU* 3.2 8.0 + - - +
121C ALA* 3.1 21.2 + - + +
----------------------------------------------------------
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Residues in contact with ALA 118 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C VAL* 4.1 15.9 - - + +
114C ALA 2.8 17.1 + - - +
115C ARG* 3.6 4.3 - - - +
117C VAL* 1.3 75.8 - - - +
119C ASP* 1.3 62.2 + - - +
121C ALA 3.0 7.6 + - - -
123C ASP* 2.8 43.8 + - + +
126C THR* 3.9 24.5 - - + -
127C ALA* 3.9 8.5 - - + +
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Residues in contact with ASP 119 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115C ARG* 2.7 34.5 + - - +
116C ASP* 3.6 9.4 - - - +
117C VAL 3.3 0.2 - - - -
118C ALA* 1.3 74.2 - - - +
120C GLU* 1.3 56.8 + - - +
122C ASP* 3.0 24.3 + - - +
123C ASP 4.6 2.0 - - - +
124C GLU* 2.6 33.4 - - - +
127C ALA* 3.3 20.0 - - - +
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Residues in contact with GLU 120 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116C ASP* 3.0 20.0 + - - +
117C VAL* 3.6 8.7 - - - +
118C ALA 3.2 0.4 - - - -
119C ASP* 1.3 75.3 - - - +
121C ALA* 1.3 57.6 + - - +
122C ASP* 3.1 11.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 121 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7C GLN 5.6 2.2 - - - +
9C VAL* 3.9 21.8 - - + -
117C VAL* 3.1 11.5 + - + +
118C ALA 3.0 9.6 + - - +
120C GLU* 1.3 75.0 - - - +
122C ASP* 1.3 71.8 + - - +
123C ASP* 3.1 5.6 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il