Contacts of the helix formed by residues 281 - 337 (chain C) in PDB entry 1NWQ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 281 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282C SER* 1.3 73.5 + - - +
283C ASN* 2.9 35.5 + - - +
284C GLU* 3.3 34.1 - - + +
285C TYR* 4.1 5.5 + - - +
288C ARG* 5.4 1.9 + - - -
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Residues in contact with SER 282 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281C ASN* 1.3 82.3 - - - +
283C ASN* 1.3 55.7 + - - -
284C GLU 2.6 3.9 + - - -
285C TYR* 2.5 41.2 + - - +
286C ARG* 3.0 10.2 + - - +
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Residues in contact with ASN 283 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281C ASN* 2.9 32.4 + - - +
282C SER* 1.3 77.8 + - - +
284C GLU* 1.3 77.0 + - - +
286C ARG* 3.7 12.1 - - - +
287C VAL* 2.7 31.7 + - + +
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Residues in contact with GLU 284 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281C ASN* 3.3 39.9 - - + +
282C SER 2.6 3.4 + - - -
283C ASN* 1.3 85.9 + - - +
285C TYR* 1.3 59.8 + - - +
287C VAL* 3.8 8.3 - - - +
288C ARG* 3.2 64.6 + - - +
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Residues in contact with TYR 285 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B C 3.8 8.8 + - - -
3B A 2.8 35.3 + - - -
281C ASN 4.5 5.6 - - - +
282C SER* 2.5 17.6 + - - +
284C GLU* 1.3 70.1 - - - +
286C ARG* 1.3 88.6 + - + +
287C VAL 2.7 11.0 + - - -
288C ARG* 2.7 37.6 + - + +
289C ARG* 2.8 39.7 + - + +
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Residues in contact with ARG 286 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1B G 4.7 1.4 + - - -
2B C 3.4 33.5 + - - -
282C SER* 3.0 12.2 + - - +
283C ASN* 4.2 12.8 - - - +
285C TYR* 1.3 100.3 - - + +
287C VAL* 1.3 58.8 + - - +
289C ARG* 3.7 10.3 - - - +
290C GLU* 3.1 22.7 + - - +
293C ASN* 4.3 6.3 - - - +
----------------------------------------------------------
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Residues in contact with VAL 287 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283C ASN* 2.7 22.0 + - + +
284C GLU* 3.8 11.4 - - - +
285C TYR 2.7 4.0 + - - -
286C ARG* 1.3 72.3 - - - +
288C ARG* 1.3 71.8 + - + +
289C ARG 2.9 1.3 - - - -
290C GLU* 3.2 13.3 + - + +
291C ARG* 2.9 44.2 + - - +
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Residues in contact with ARG 288 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281C ASN 5.4 1.8 + - - -
284C GLU* 3.2 42.4 + - - +
285C TYR* 2.7 33.0 + - + +
287C VAL* 1.3 77.9 - - + +
289C ARG* 1.3 65.2 + - - +
291C ARG* 3.4 16.0 - - - +
292C ASN* 3.1 18.5 + - - +
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Residues in contact with ARG 289 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B C 2.8 44.4 + - - +
3B A 3.0 34.5 + - - -
285C TYR* 2.8 53.3 + - + +
286C ARG* 3.5 25.6 - - - +
287C VAL 2.9 0.2 - - - -
288C ARG* 1.3 74.6 + - - +
290C GLU* 1.3 69.5 + - - +
292C ASN* 2.6 42.8 + - - +
293C ASN* 2.7 41.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 290 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286C ARG* 3.1 16.4 + - - +
287C VAL* 3.4 19.3 - - + +
289C ARG* 1.3 79.0 - - - +
291C ARG* 1.3 70.0 + - + +
293C ASN* 3.1 21.6 + - - +
294C ILE* 3.1 41.1 + - + +
297C ARG* 4.5 6.0 + - - -
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Residues in contact with ARG 291 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287C VAL* 2.9 33.4 + - - +
288C ARG* 3.4 20.0 - - - +
289C ARG 2.9 0.2 + - - -
290C GLU* 1.3 79.6 - - - +
292C ASN* 1.3 61.9 - - - +
294C ILE* 3.1 17.6 + - - +
295C ALA* 3.2 12.1 + - - +
-7D G 5.3 2.8 - - - -
-6D G 3.3 36.3 + - - +
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Residues in contact with ASN 292 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3B A 3.0 24.0 + - - +
4B A 4.1 6.9 - - - +
288C ARG 3.1 9.5 + - - +
289C ARG* 2.6 39.2 + - - +
291C ARG* 1.3 74.6 - - - +
293C ASN* 1.3 58.5 + - - +
295C ALA* 3.1 11.1 + - - +
296C VAL* 2.8 32.6 + - - +
-5D A 4.5 7.2 + - - +
-4D T 3.1 25.5 + - - +
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Residues in contact with ASN 293 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1B G 3.1 30.3 + - + +
2B C 3.3 14.7 + - - -
286C ARG* 4.3 6.1 - - - +
289C ARG* 2.7 54.3 + - - +
290C GLU* 3.1 16.2 + - - +
292C ASN* 1.3 76.5 - - - +
294C ILE* 1.3 58.7 + - - +
296C VAL* 3.4 10.1 + - - +
297C ARG* 2.9 48.1 + - - +
----------------------------------------------------------
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Residues in contact with ILE 294 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290C GLU* 3.1 38.8 - - + +
291C ARG* 3.1 7.6 + - - +
292C ASN 3.0 0.8 - - - -
293C ASN* 1.3 75.1 - - - +
295C ALA* 1.3 68.7 + - - +
296C VAL 2.9 1.8 - - - -
297C ARG* 2.9 29.4 + - + +
298C LYS* 2.7 29.5 + - + +
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Residues in contact with ALA 295 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291C ARG 3.2 9.0 + - - +
292C ASN* 3.1 11.7 + - - +
294C ILE* 1.3 77.5 - - - +
296C VAL* 1.3 58.5 + - - +
298C LYS* 3.6 3.3 - - - +
299C SER* 2.9 33.8 + - - -
-6D G 4.2 7.2 - - + -
-5D A 3.5 46.9 + - + +
-4D T 4.0 5.1 - - + +
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Residues in contact with VAL 296 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1B C 6.0 1.1 - - + -
1B G 4.6 12.3 - - + +
2B C 4.3 6.7 - - + +
3B A 3.9 12.8 - - - +
292C ASN* 2.8 18.6 + - - +
293C ASN* 3.5 9.9 - - - +
295C ALA* 1.3 74.4 - - - +
297C ARG* 1.3 74.6 + - + +
299C SER* 3.8 1.2 - - - -
300C ARG* 2.9 48.1 + - - +
-4D T 4.0 13.0 - - + -
-3D T 2.9 33.2 - - + +
----------------------------------------------------------
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Residues in contact with ARG 297 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1B C 4.4 29.1 - - + +
1B G 2.5 46.1 + - - +
290C GLU* 4.5 6.9 + - - -
293C ASN* 2.9 26.2 + - - +
294C ILE* 2.9 43.8 + - + +
296C VAL* 1.3 75.2 - - + +
298C LYS* 1.3 68.1 + - - +
300C ARG* 2.8 16.8 + - - +
301C ASP* 2.8 24.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 298 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294C ILE* 2.7 24.7 + - + +
295C ALA* 3.6 4.0 - - - +
297C ARG* 1.3 71.4 - - - +
299C SER* 1.3 55.8 + - - +
301C ASP* 2.9 13.1 + - - +
302C LYS* 2.8 68.9 + - + +
-6D G 3.8 2.8 + - - -
-5D A 2.4 45.6 + - - +
-4D T 6.1 0.2 - - - -
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Residues in contact with SER 299 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295C ALA 2.9 21.1 + - - -
296C VAL 4.0 2.2 - - - -
298C LYS* 1.3 75.5 - - - +
300C ARG* 1.3 66.9 + - - +
302C LYS* 3.9 7.6 - - - +
303C ALA* 3.4 18.0 + - - +
306C ARG* 4.9 1.4 + - - -
-5D A 4.2 8.3 - - - -
-4D T 2.8 50.0 + - - +
-3D T 4.8 4.9 - - - +
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Residues in contact with ARG 300 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1B C 4.0 16.3 - - - -
1B G 3.0 25.5 + - - -
2B C 4.3 1.0 - - - +
296C VAL* 2.9 41.2 + - - +
297C ARG* 2.8 10.2 + - - +
299C SER* 1.3 75.0 - - - +
301C ASP* 1.3 68.8 + - - +
303C ALA* 3.0 8.3 + - - +
304C LYS* 2.9 21.8 + - - +
-3D T 4.0 23.0 - - + +
-2D G 2.8 30.5 + - - -
-1D C 3.0 16.5 - - - +
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Residues in contact with ASP 301 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1B C 5.5 2.4 + - - -
297C ARG* 2.8 27.8 + - - +
298C LYS* 3.5 8.2 + - - +
300C ARG* 1.3 77.3 - - - +
302C LYS* 1.3 64.5 + - + +
304C LYS* 2.8 31.8 + - + +
305C GLN* 2.7 27.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 302 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298C LYS* 2.8 52.9 + - + +
299C SER* 4.1 7.9 - - - +
300C ARG 3.3 0.2 - - - -
301C ASP* 1.3 71.2 - - - +
303C ALA* 1.3 56.9 + - - +
305C GLN* 2.9 25.2 - - + +
306C ARG* 3.0 33.1 + - - +
-5D A 5.4 0.2 + - - -
-4D T 5.7 5.8 - - - +
----------------------------------------------------------
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Residues in contact with ALA 303 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299C SER 3.4 11.4 + - - +
300C ARG* 3.0 10.9 + - + +
301C ASP 2.9 0.6 - - - -
302C LYS* 1.3 76.0 - - - +
304C LYS* 1.3 70.6 + - - +
305C GLN 2.9 1.3 - - - -
306C ARG* 3.9 22.0 - - - +
307C ASN* 2.9 29.0 + - - +
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Residues in contact with LYS 304 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-2B G 3.3 40.3 + - - +
-1B C 6.0 0.2 + - - -
300C ARG* 2.9 11.1 + - - +
301C ASP* 2.8 34.0 + - + +
303C ALA* 1.3 74.5 - - - +
305C GLN* 1.3 68.6 + - - +
307C ASN* 3.0 17.9 + - - +
308C VAL* 3.2 12.0 + - + +
----------------------------------------------------------
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Residues in contact with GLN 305 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301C ASP* 2.7 13.3 + - + +
302C LYS* 2.9 18.4 - - + +
304C LYS* 1.3 71.0 - - - +
306C ARG* 1.3 59.6 + - - +
307C ASN 2.8 1.3 - - - -
308C VAL* 2.4 45.1 + - - +
309C GLU* 3.0 33.5 + - + +
----------------------------------------------------------
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Residues in contact with ARG 306 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299C SER 4.9 2.0 + - - -
302C LYS* 3.0 40.9 + - - +
303C ALA* 3.9 18.1 - - - +
305C GLN* 1.3 76.8 - - - +
307C ASN* 1.3 63.2 + - - +
309C GLU* 3.2 15.0 - - + +
310C THR* 3.1 27.6 + - - -
-4D T 4.4 20.3 + - - -
-3D T 5.5 4.6 + - - -
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Residues in contact with ASN 307 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307A ASN* 3.5 38.4 + - - +
310A THR* 5.6 3.6 - - - +
303C ALA* 2.9 17.3 + - - +
304C LYS* 3.1 15.4 - - - +
305C GLN 2.6 5.5 + - - -
306C ARG* 1.3 77.3 - - - +
308C VAL* 1.3 59.7 + - - +
310C THR* 3.8 8.5 + - - +
311C GLN* 3.5 21.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 308 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304C LYS* 3.2 12.0 + - + +
305C GLN* 2.4 35.9 + - - +
307C ASN* 1.3 64.8 - - + +
309C GLU* 1.3 67.3 + - - +
310C THR 2.9 2.2 - - - -
311C GLN* 2.3 39.8 + - + +
312C GLN* 3.1 11.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU 309 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305C GLN* 3.4 33.4 + - + +
306C ARG* 3.2 19.7 - - + +
308C VAL* 1.3 82.4 - - - +
310C THR* 1.3 52.9 + - - +
312C GLN* 3.2 10.0 - - - +
313C LYS* 2.8 34.0 + - - +
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Residues in contact with THR 310 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A THR* 3.7 31.0 - - + -
311A GLN* 4.8 14.6 + - - +
314A VAL* 4.5 17.6 - - + +
306C ARG 3.1 14.3 + - - -
307C ASN* 3.8 10.2 + - - +
308C VAL 2.6 3.2 + - - -
309C GLU* 1.3 73.6 - - - +
311C GLN* 1.3 57.8 + - - +
313C LYS* 3.0 8.6 + - - +
314C VAL* 2.7 35.2 + - + -
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Residues in contact with GLN 311 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307A ASN* 5.7 1.4 + - - -
310A THR* 3.5 35.8 + - - +
307C ASN 3.7 12.8 + - - +
308C VAL* 2.3 27.4 + - + +
310C THR* 1.3 72.9 - - - +
312C GLN* 1.3 64.3 + - - +
314C VAL* 3.0 25.3 + - - +
315C LEU* 3.2 18.6 + - + +
----------------------------------------------------------
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Residues in contact with GLN 312 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308C VAL* 3.1 10.8 + - + +
309C GLU* 3.2 16.4 - - - +
311C GLN* 1.3 77.7 - - - +
313C LYS* 1.3 54.5 + - - +
315C LEU* 2.6 37.0 + - - +
316C GLU* 3.0 44.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 313 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314A VAL* 4.8 9.4 - - + -
309C GLU 2.8 16.6 + - - +
310C THR* 3.3 11.9 - - - +
312C GLN* 1.3 69.4 - - - +
314C VAL* 1.3 59.2 + - - +
315C LEU 2.6 11.2 + - - -
316C GLU* 4.0 25.7 + - + +
317C LEU* 2.9 46.7 + - + +
----------------------------------------------------------
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Residues in contact with VAL 314 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A THR* 4.3 9.2 - - - +
313A LYS* 4.0 35.9 - - + +
314A VAL* 3.7 33.6 - - + +
317A LEU* 4.3 3.9 - - + +
310C THR* 2.7 18.4 + - + +
311C GLN* 3.0 20.8 + - - +
313C LYS* 1.3 72.9 - - - +
315C LEU* 1.3 59.6 + - + +
317C LEU* 4.0 6.0 - - - +
318C THR* 2.4 32.7 + - - +
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Residues in contact with LEU 315 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311C GLN* 3.2 15.4 + - + +
312C GLN* 2.6 24.8 + - - +
313C LYS 2.6 0.4 + - - -
314C VAL* 1.3 87.5 - - + +
316C GLU* 1.3 54.6 + - - +
317C LEU 2.8 5.4 - - - -
318C THR* 3.1 13.0 + - + +
319C SER* 2.9 29.5 + - - -
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Residues in contact with GLU 316 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312C GLN* 3.2 49.0 + - - +
313C LYS* 4.0 28.4 + - + +
315C LEU* 1.3 75.4 - - - +
317C LEU* 1.3 59.3 + - - +
319C SER* 4.0 5.3 - - - -
320C ASP* 2.8 39.2 + - - +
323C ARG* 4.3 2.1 + - - +
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Residues in contact with LEU 317 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314A VAL* 4.2 11.4 - - + +
317A LEU* 3.9 37.7 - - + +
318A THR* 3.9 21.8 - - + +
321A ASN* 4.2 11.9 - - + +
313C LYS* 2.9 44.4 + - + +
314C VAL 4.1 1.8 - - - -
315C LEU 2.8 0.4 - - - -
316C GLU* 1.3 78.7 - - + +
318C THR* 1.3 66.6 + - - +
320C ASP* 4.4 2.7 - - + -
321C ASN* 2.9 46.0 + - - +
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Residues in contact with THR 318 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317A LEU* 3.5 19.0 - - + +
314C VAL* 2.4 28.4 + - - +
315C LEU* 3.1 15.3 + - + +
317C LEU* 1.3 78.3 - - - +
319C SER* 1.3 63.5 + - - +
321C ASN* 4.0 2.7 - - - +
322C ASP* 3.0 25.6 + - + +
325C ARG* 5.7 0.2 + - - -
----------------------------------------------------------
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Residues in contact with SER 319 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315C LEU 2.9 15.9 + - - -
316C GLU* 4.0 4.9 - - - -
318C THR* 1.3 78.4 - - - +
320C ASP* 1.3 63.4 + - - +
322C ASP* 3.0 8.8 + - - +
323C ARG* 2.8 45.4 + - - +
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Residues in contact with ASP 320 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ASN* 4.2 16.3 + - - +
325A ARG* 4.3 15.2 + - - -
316C GLU* 2.8 27.9 + - - +
317C LEU* 3.8 4.9 - - + +
319C SER* 1.3 71.1 - - - +
321C ASN* 1.3 66.6 + - - +
323C ARG* 3.0 37.0 + - - +
324C LEU* 2.9 27.9 + - - +
----------------------------------------------------------
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Residues in contact with ASN 321 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317A LEU* 3.1 26.4 + - + +
320A ASP* 3.1 32.4 + - - +
321A ASN* 2.5 44.4 + - - +
324A LEU* 3.7 8.4 - - + +
317C LEU* 2.9 23.6 + - - +
318C THR* 4.0 3.6 - - - +
320C ASP* 1.3 72.4 - - - +
322C ASP* 1.3 64.7 + - - +
324C LEU* 3.1 10.2 + - - +
325C ARG* 3.0 34.1 + - - +
----------------------------------------------------------
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Residues in contact with ASP 322 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318C THR* 3.0 19.0 + - + +
319C SER* 3.0 7.9 + - - +
321C ASN* 1.3 74.3 - - - +
323C ARG* 1.3 60.6 + - - +
324C LEU 2.9 7.0 + - - -
325C ARG* 3.0 22.6 + - - +
326C LYS* 3.1 29.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 323 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316C GLU* 4.3 2.6 + - - +
319C SER* 2.8 39.2 + - - +
320C ASP* 3.0 52.8 + - - +
322C ASP* 1.3 74.7 + - - +
324C LEU* 1.3 66.2 + - + +
325C ARG 3.4 0.2 - - - -
326C LYS* 3.9 14.5 + - + +
327C ARG* 3.4 18.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 324 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ASN* 3.9 22.4 - - - +
324A LEU* 3.5 30.4 - - + +
325A ARG* 3.8 26.9 - - + +
328A VAL* 4.3 18.0 - - + +
320C ASP* 2.9 14.8 + - - +
321C ASN 3.2 12.1 - - - +
322C ASP 2.9 0.6 - - - -
323C ARG* 1.3 86.9 - - + +
325C ARG* 1.3 65.8 + - - +
326C LYS 3.2 0.2 - - - -
327C ARG* 3.3 9.4 + - + +
328C VAL* 3.1 21.5 + - - +
----------------------------------------------------------
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Residues in contact with ARG 325 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317A LEU* 6.1 1.2 - - - +
320A ASP* 2.8 30.2 + - - +
323A ARG* 3.1 31.7 - - - +
324A LEU* 3.2 23.1 - - + -
318C THR 5.7 0.2 + - - -
321C ASN* 3.0 32.1 + - - +
322C ASP* 3.0 14.7 + - - +
324C LEU* 1.3 79.1 - - - +
326C LYS* 1.3 59.7 + - + +
328C VAL* 3.1 13.1 + - + +
329C GLU* 3.0 27.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 326 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322C ASP* 3.1 31.9 - - - +
323C ARG* 4.1 13.2 - - + +
324C LEU 3.2 0.4 - - - -
325C ARG* 1.3 80.3 - - + +
327C ARG* 1.3 56.8 + - - +
329C GLU* 3.7 8.7 - - - +
330C GLN* 3.0 28.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG 327 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328A VAL* 4.7 14.4 - - + -
323C ARG 3.4 14.1 + - - +
324C LEU* 3.3 16.0 + - + +
325C ARG 3.1 0.6 - - - -
326C LYS* 1.3 78.8 - - - +
328C VAL* 1.3 60.2 + - - +
330C GLN* 3.7 25.8 - - - +
331C LEU* 2.7 58.5 + - + +
334C GLU* 5.2 3.6 + - - -
----------------------------------------------------------
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Residues in contact with VAL 328 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324A LEU* 5.8 4.3 - - + -
327A ARG* 3.1 39.7 - - + -
328A VAL* 3.8 21.0 - - + +
331A LEU* 3.6 8.1 - - + +
324C LEU 3.1 11.4 + - - +
325C ARG* 3.4 13.7 - - + +
327C ARG* 1.3 78.1 - - - +
329C GLU* 1.3 57.8 + - + +
331C LEU* 3.5 5.0 - - - -
332C SER* 2.6 42.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 329 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325C ARG 3.0 12.0 + - - +
326C LYS* 3.7 8.7 - - - +
328C VAL* 1.3 83.5 - - + +
330C GLN* 1.3 69.6 + - - +
332C SER* 3.1 14.4 + - - -
333C ARG* 3.0 38.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 330 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326C LYS 3.0 16.3 + - - +
327C ARG* 3.7 29.5 - - - +
329C GLU* 1.3 84.7 - - + +
331C LEU* 1.3 66.7 + - - +
332C SER 2.9 1.6 + - - -
333C ARG* 3.2 24.3 + - - +
334C GLU* 2.8 48.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 331 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328A VAL* 4.4 16.6 - - + +
331A LEU* 3.8 18.9 - - + +
332A SER* 3.7 22.0 - - - +
335A LEU* 3.1 33.4 - - + -
327C ARG* 2.7 48.1 + - - +
328C VAL* 3.6 4.0 - - - +
330C GLN* 1.3 76.4 - - - +
332C SER* 1.3 62.2 + - - +
334C GLU* 3.4 21.8 - - - +
335C LEU* 3.6 6.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 332 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327A ARG* 5.2 3.3 + - - -
331A LEU* 3.2 22.8 - - - +
328C VAL* 2.6 21.2 + - - +
329C GLU* 3.4 11.0 - - - -
330C GLN 2.9 1.4 + - - -
331C LEU* 1.3 69.6 - - - +
333C ARG* 1.4 53.0 + - - -
334C GLU 2.9 4.3 - - - -
335C LEU* 2.2 39.8 + - - +
336C ASP* 3.0 12.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 333 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329C GLU* 3.0 38.3 + - - +
330C GLN* 3.4 21.5 - - - +
332C SER* 1.4 73.1 - - - +
334C GLU* 1.3 55.5 + - - +
336C ASP* 3.8 16.2 + - - +
337C THR* 3.0 35.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 334 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
335A LEU* 3.6 21.0 - - + +
339A ARG* 4.4 9.7 + - - -
327C ARG* 5.2 5.4 + - - -
330C GLN* 2.8 34.2 + - - +
331C LEU* 3.4 23.6 - - - +
332C SER 2.8 0.2 + - - -
333C ARG* 1.3 78.7 - - - +
335C LEU* 1.3 57.9 + - - +
337C THR* 4.7 4.5 - - - +
338C LEU* 3.0 25.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 335 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
331A LEU* 4.2 9.2 - - + +
334A GLU* 3.6 43.3 - - + +
335A LEU* 3.4 36.6 - - + +
338A LEU* 3.8 25.6 - - + -
331C LEU 4.1 3.4 - - - +
332C SER* 2.2 33.6 + - - +
334C GLU* 1.3 68.2 - - - +
336C ASP* 1.3 65.9 + - - +
337C THR 2.9 1.3 - - - -
338C LEU* 2.8 12.6 + - + -
339C ARG* 3.0 34.2 - - - +
----------------------------------------------------------
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Residues in contact with ASP 336 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332C SER* 3.0 16.4 + - - +
333C ARG* 3.8 17.3 + - - +
335C LEU* 1.3 76.2 - - - +
337C THR* 1.3 61.3 + - - +
339C ARG* 3.4 12.7 + - - +
340C GLY* 3.2 27.8 + - - +
----------------------------------------------------------
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Residues in contact with THR 337 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
333C ARG* 3.0 16.1 + - - +
334C GLU* 4.8 5.2 - - - +
335C LEU 2.9 0.6 - - - -
336C ASP* 1.3 78.3 - - - +
338C LEU* 1.3 61.6 + - + +
339C ARG 3.0 9.8 + - - -
340C GLY* 4.1 7.8 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il