Contacts of the helix formed by residues 47 - 76 (chain B) in PDB entry 1O9R


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLN 47 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45B  GLY      3.1     1.6    +      -       -      -
     46B  PRO*     1.4    78.1    -      -       -      +
     48B  PHE*     1.3    66.2    +      -       -      +
     49B  ILE*     3.2     2.3    +      -       -      -
     50B  ALA*     3.5    20.9    +      -       +      +
     51B  VAL*     3.1    35.9    +      -       +      +
    103B  ILE*     3.6    18.0    -      -       +      +
    107B  LEU*     5.2     1.6    -      -       -      +
    157B  HIS*     2.9    36.6    +      -       -      +
     47C  GLN*     4.8     6.3    -      -       +      -
     50C  ALA*     6.1     1.3    -      -       +      -
    157C  HIS*     4.8     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 48 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40B  HIS      4.5     1.6    -      -       -      -
     41B  TRP      5.1     0.2    -      -       -      -
     43B  LEU*     3.3    37.7    -      -       +      +
     45B  GLY      3.0    18.1    +      -       -      +
     46B  PRO      3.2     3.0    +      -       -      -
     47B  GLN*     1.3    76.7    -      -       -      +
     49B  ILE*     1.3    68.7    +      -       +      +
     51B  VAL*     3.9     0.2    -      -       -      -
     52B  HIS*     2.8    66.4    +      +       +      +
    103B  ILE*     3.5     8.5    -      -       +      +
    152C  TRP*     3.9    17.3    -      +       -      -
    153C  PHE*     3.5    43.5    -      +       -      -
    156C  ALA*     3.6    17.7    -      -       +      +
    157C  HIS*     3.8    22.8    -      +       +      +
----------------------------------------------------------
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Residues in contact with ILE 49 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47B  GLN      3.4     0.8    -      -       -      -
     48B  PHE*     1.3    86.2    -      -       +      +
     50B  ALA*     1.3    61.7    +      -       -      +
     52B  HIS*     3.4     3.2    +      -       +      +
     53B  GLU*     2.9    59.0    +      -       +      +
     50C  ALA*     3.6    37.2    -      -       +      +
     54C  LEU*     4.1    18.2    -      -       +      -
    153C  PHE*     3.5    41.1    -      -       +      -
    157C  HIS*     3.4    24.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 50 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47B  GLN*     3.5    25.8    +      -       +      +
     48B  PHE      3.4     0.4    -      -       -      -
     49B  ILE*     1.3    84.3    -      -       -      +
     51B  VAL*     1.3    62.4    +      -       -      +
     53B  GLU*     3.5     5.1    +      -       -      +
     54B  LEU*     3.0    24.9    +      -       -      +
    157B  HIS*     5.9     1.1    -      -       +      -
     50C  ALA*     4.4    15.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 51 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43B  LEU*     3.7    23.1    -      -       +      -
     47B  GLN*     3.1    47.2    +      -       +      +
     50B  ALA*     1.3    74.5    -      -       -      +
     52B  HIS*     1.4    66.9    +      -       -      +
     54B  LEU*     3.3     9.1    +      -       +      +
     55B  LEU*     3.1    37.3    +      -       +      +
    103B  ILE*     4.3    12.3    -      -       +      -
    107B  LEU*     4.5    19.1    -      -       +      -
    110B  LEU*     5.8     0.9    -      -       +      -
    154B  LEU*     5.9     1.3    -      -       +      -
    157B  HIS*     4.1    12.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 52 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     71A  GLU*     4.8     0.2    +      -       -      -
   1163A   FE      4.2     7.4    -      -       -      -
     40B  HIS*     2.7    86.2    +      +       -      -
     41B  TRP*     4.7     0.4    -      +       -      -
     43B  LEU*     3.3    12.1    -      -       +      +
     48B  PHE*     2.8    41.6    +      +       +      +
     49B  ILE*     3.6     8.7    -      -       +      +
     51B  VAL*     1.4    74.8    -      -       -      +
     53B  GLU*     1.4    67.7    -      -       +      +
     55B  LEU*     3.5     6.7    +      -       -      +
     56B  ASP*     3.5     1.8    +      -       -      -
    152C  TRP*     3.8    24.4    -      +       -      -
    153C  PHE*     3.8    27.9    -      +       -      -
----------------------------------------------------------
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Residues in contact with GLU 53 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49B  ILE*     2.9    47.1    +      -       +      +
     50B  ALA*     4.1     4.1    -      -       -      +
     52B  HIS*     1.4    82.5    -      -       +      +
     54B  LEU*     1.3    65.1    +      -       -      +
     56B  ASP*     3.1    19.1    +      -       -      +
     57B  THR*     3.4    12.6    +      -       -      -
     54C  LEU*     5.2     3.3    -      -       -      +
    153C  PHE*     5.3     1.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 54 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     50B  ALA      3.0    18.9    +      -       -      +
     51B  VAL*     3.7    10.5    -      -       +      +
     53B  GLU*     1.3    74.2    -      -       -      +
     55B  LEU*     1.3    64.6    +      -       +      +
     57B  THR*     3.0    25.8    +      -       +      +
     58B  PHE*     3.1    48.4    +      -       +      -
    153B  PHE*     3.9    26.2    -      -       +      +
    154B  LEU*     5.3     4.3    -      -       +      -
    157B  HIS*     4.2    23.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 55 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36B  THR*     3.2    29.0    -      -       +      +
     37B  LYS*     6.3     0.2    -      -       -      -
     39B  ALA*     4.0    10.8    -      -       +      -
     40B  HIS*     3.8    34.8    -      -       +      +
     43B  LEU*     4.2     5.4    -      -       +      -
     51B  VAL*     3.1    34.8    +      -       +      +
     52B  HIS      3.8     5.4    -      -       -      +
     53B  GLU      3.2     0.4    -      -       -      -
     54B  LEU*     1.3    78.2    -      -       +      +
     56B  ASP*     1.3    58.4    +      -       -      +
     58B  PHE*     3.3    26.5    +      -       +      -
     59B  ARG*     3.0    24.3    +      -       -      +
    110B  LEU*     3.9    24.0    -      -       +      -
    114B  TYR*     5.0     0.9    -      -       +      +
    154B  LEU*     4.4     6.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 56 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1163A   FE      4.1     5.5    -      -       -      -
     37B  LYS*     2.6    36.1    +      -       -      +
     40B  HIS*     3.0    31.7    +      -       -      -
     52B  HIS*     3.5     2.5    +      -       -      +
     53B  GLU*     3.1    15.1    +      -       -      +
     55B  LEU*     1.3    76.3    -      -       -      +
     57B  THR*     1.4    65.1    +      -       -      +
     59B  ARG*     3.3     5.6    +      -       -      +
     60B  THR*     3.1    25.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with THR 57 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53B  GLU      3.4     8.5    +      -       -      -
     54B  LEU*     3.0    18.9    +      -       +      +
     56B  ASP*     1.4    78.2    -      -       -      +
     58B  PHE*     1.3    67.4    +      -       +      +
     60B  THR*     3.3     7.7    +      -       -      -
     61B  GLN*     3.1    42.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 58 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36B  THR*     4.3     0.7    -      -       +      -
     54B  LEU*     3.1    49.0    +      -       +      -
     55B  LEU*     3.6    21.3    -      -       +      +
     56B  ASP      3.3     0.2    -      -       -      -
     57B  THR*     1.3    82.1    -      -       +      +
     59B  ARG*     1.3    55.3    +      -       -      +
     61B  GLN*     3.2    13.2    +      -       -      +
     62B  LEU*     2.9    33.3    +      -       -      +
    114B  TYR*     3.3    31.9    -      +       +      +
    150B  SER*     3.5    43.5    -      -       -      +
    153B  PHE*     3.9    13.5    -      +       +      -
    154B  LEU*     3.8    28.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 59 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33A  ALA*     6.2     0.2    -      -       -      +
     59A  ARG*     3.5    23.8    -      -       -      +
     63A  ASP*     4.1    14.1    +      -       -      -
     33B  ALA*     2.9    53.6    +      -       -      +
     34B  LEU*     4.0    14.7    -      -       -      +
     36B  THR*     4.0    10.7    -      -       +      +
     37B  LYS*     3.4    40.1    -      -       +      +
     55B  LEU      3.0    15.4    +      -       -      +
     56B  ASP*     3.7     8.1    -      -       -      +
     57B  THR      3.2     0.4    -      -       -      -
     58B  PHE*     1.3    75.4    -      -       -      +
     60B  THR*     1.3    63.3    +      -       -      +
     62B  LEU*     3.2     4.5    +      -       -      +
     63B  ASP*     2.8    49.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 60 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56B  ASP      3.1    14.2    +      -       -      -
     57B  THR*     3.6    11.1    -      -       -      -
     58B  PHE      3.3     0.2    -      -       -      -
     59B  ARG*     1.3    74.9    -      -       -      +
     61B  GLN*     1.3    61.1    +      -       +      +
     63B  ASP*     3.3    12.6    +      -       +      +
     64B  ASN*     3.0    43.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 61 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     57B  THR*     3.1    34.7    +      -       +      +
     58B  PHE*     3.2    11.7    +      -       -      +
     60B  THR*     1.3    77.8    -      -       +      +
     62B  LEU*     1.4    58.8    +      -       +      +
     64B  ASN*     3.1     8.4    +      -       -      +
     65B  HIS*     2.9    45.0    +      -       +      -
    146B  ASP*     3.8    27.9    +      -       +      +
    150B  SER*     3.6    20.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 62 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29B  VAL*     3.7    25.6    -      -       +      +
     32B  LEU*     3.8    23.8    -      -       +      -
     33B  ALA*     3.7    32.1    -      -       +      +
     36B  THR*     3.7    12.6    -      -       -      +
     58B  PHE      2.9    22.3    +      -       -      +
     59B  ARG*     3.7     4.5    -      -       -      +
     61B  GLN*     1.4    74.1    -      -       +      +
     63B  ASP*     1.3    58.5    +      -       -      +
     65B  HIS*     4.5     6.7    -      -       +      +
     66B  GLY*     2.8    28.4    +      -       -      -
    114B  TYR*     3.5    25.4    -      -       +      +
    147B  LEU*     4.1    20.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 63 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59A  ARG*     4.0    13.2    +      -       -      +
     63A  ASP*     4.4    12.4    -      -       -      +
     33B  ALA*     4.3     4.4    -      -       -      +
     59B  ARG*     2.8    49.0    +      -       -      +
     60B  THR*     3.4    14.0    -      -       +      +
     62B  LEU*     1.3    76.0    -      -       -      +
     64B  ASN*     1.3    62.8    +      -       -      +
     66B  GLY*     4.0     0.6    -      -       -      -
     67B  ASP*     2.9    40.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 64 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60B  THR*     3.0    31.8    +      -       -      +
     61B  GLN*     3.1     9.4    +      -       -      +
     63B  ASP*     1.3    81.0    -      -       -      +
     65B  HIS*     1.3    67.1    +      -       +      +
     67B  ASP*     3.4     9.4    +      -       -      +
     68B  THR*     3.0    29.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 65 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29B  VAL*     5.2     4.5    -      -       +      -
     61B  GLN*     2.9    34.3    +      -       +      +
     62B  LEU*     4.2     7.6    -      -       +      +
     64B  ASN*     1.3    72.3    -      -       +      +
     66B  GLY*     1.3    66.9    +      -       -      +
     68B  THR*     3.2     8.8    +      -       -      +
     69B  ILE*     3.0    32.9    +      -       +      +
    139B  ILE*     4.7     4.0    +      -       -      +
    142B  ALA*     3.6    12.7    -      -       +      +
    143B  ALA*     3.5    45.8    +      -       +      +
    146B  ASP*     2.7    39.2    +      -       +      +
    147B  LEU*     6.1     3.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 66 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41A  TRP*     4.9     0.9    -      -       -      -
     26B  LEU*     3.3    23.4    -      -       -      +
     29B  VAL*     3.9    17.1    -      -       -      +
     30B  ILE*     5.7     2.2    -      -       -      -
     62B  LEU      2.8    22.3    +      -       -      -
     63B  ASP*     4.0     0.7    -      -       -      -
     65B  HIS*     1.3    72.9    -      -       -      +
     67B  ASP*     1.3    63.1    +      -       -      +
     69B  ILE*     3.3     3.9    +      -       -      -
     70B  ALA*     2.9    20.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 67 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37A  LYS*     2.6    38.3    +      -       -      +
     41A  TRP*     3.4    25.5    -      -       -      +
     63B  ASP*     2.9    26.0    +      -       -      +
     64B  ASN*     3.6     9.0    -      -       -      +
     65B  HIS      3.2     0.2    -      -       -      -
     66B  GLY*     1.3    76.7    -      -       -      +
     68B  THR*     1.3    56.0    +      -       -      +
     70B  ALA*     3.4     1.0    +      -       -      +
     71B  GLU*     2.8    37.8    +      -       -      +
   1163B   FE      4.5    11.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with THR 68 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64B  ASN      3.0    18.4    +      -       -      -
     65B  HIS*     3.2    10.7    +      -       -      +
     67B  ASP*     1.3    76.5    -      -       -      +
     69B  ILE*     1.3    57.7    +      -       -      +
     71B  GLU*     3.5    12.5    +      -       -      +
     72B  ARG*     3.1    27.0    +      -       -      +
     75B  GLN*     5.2     0.9    +      -       -      -
    139B  ILE*     3.6    28.3    -      -       +      +
    145D  ARG*     3.6    28.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 69 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22B  LEU*     3.3    44.3    -      -       +      +
     25B  SER*     4.5     4.7    -      -       -      -
     26B  LEU*     4.0    13.9    -      -       +      +
     29B  VAL*     4.4    21.1    -      -       +      -
     65B  HIS*     3.0    29.1    +      -       +      +
     66B  GLY*     3.6     5.2    -      -       -      +
     68B  THR*     1.3    74.8    -      -       -      +
     70B  ALA*     1.3    66.6    +      -       -      +
     72B  ARG*     3.1    12.8    +      -       -      +
     73B  VAL*     3.2    13.4    +      -       +      +
    121B  ILE*     4.5     3.4    -      -       +      -
    139B  ILE*     4.0    17.3    -      -       +      -
    140B  PHE*     4.0    24.9    -      -       +      -
    143B  ALA*     5.0     5.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 70 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41A  TRP*     3.2    43.7    -      -       +      +
     26B  LEU*     3.9    18.4    -      -       +      -
     66B  GLY      2.9    15.6    +      -       -      +
     67B  ASP      3.7     0.2    -      -       -      +
     69B  ILE*     1.3    79.5    -      -       -      +
     71B  GLU*     1.3    62.6    +      -       -      +
     73B  VAL*     3.2    20.0    +      -       -      +
     74B  VAL*     3.4     6.9    +      -       -      +
     80B  ALA*     3.7    13.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 71 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40A  HIS*     5.5     0.2    -      -       -      +
     41A  TRP*     4.2    11.4    -      -       +      -
     67B  ASP*     2.8    28.6    +      -       -      +
     68B  THR*     3.9    11.7    +      -       -      +
     70B  ALA*     1.3    76.5    -      -       -      +
     72B  ARG*     1.3    58.4    +      -       -      +
     74B  VAL*     3.3     5.4    +      -       -      +
     75B  GLN*     3.0    36.3    +      -       -      +
   1163B   FE      1.9    36.4    -      -       -      -
    149D  LYS*     3.0    37.7    +      -       -      +
    152D  TRP*     3.6    29.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 72 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      8B  ASN*     4.2     0.4    +      -       -      -
     10B  LEU*     5.0     1.2    -      -       -      +
     22B  LEU*     3.6    18.4    -      -       +      -
     68B  THR      3.1    15.1    +      -       -      +
     69B  ILE      3.1     8.7    +      -       -      +
     71B  GLU*     1.3    74.6    -      -       -      +
     73B  VAL*     1.3    65.9    +      -       -      +
     75B  GLN*     3.1    31.1    +      -       -      +
     76B  LEU*     3.2    45.3    +      -       +      +
    133B  ASP*     3.1    28.9    +      -       -      -
    135B  THR*     3.5    22.1    -      -       -      +
    136B  THR*     2.8    24.2    +      -       -      +
    139B  ILE*     3.7    21.8    -      -       +      -
    122D  ARG*     4.4     4.9    -      -       -      +
    148D  ASP*     2.7    31.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 73 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19B  ILE*     4.0    13.5    -      -       +      +
     22B  LEU*     3.4    35.2    -      -       +      +
     23B  ASN*     3.7    25.1    -      -       -      +
     69B  ILE      3.2     9.4    +      -       -      +
     70B  ALA*     3.2    13.1    +      -       -      +
     72B  ARG*     1.3    77.2    -      -       -      +
     74B  VAL*     1.3    59.7    +      -       -      +
     76B  LEU*     3.2     9.7    +      -       -      +
     77B  GLY      3.5     0.2    +      -       -      -
     78B  GLY*     3.0    24.8    +      -       -      -
     79B  THR      3.4    40.6    -      -       -      +
     80B  ALA*     4.2     2.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 74 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41A  TRP*     3.5    21.8    -      -       +      +
     42A  ASN*     3.5    19.3    -      -       -      +
     44A  LYS*     3.3    24.5    +      -       -      +
     70B  ALA      3.9     8.5    -      -       -      +
     71B  GLU      3.3     6.5    +      -       -      +
     72B  ARG      3.2     0.6    -      -       -      -
     73B  VAL*     1.3    71.9    -      -       -      +
     75B  GLN*     1.3    66.6    +      -       -      +
     77B  GLY*     3.0    14.2    +      -       -      -
     78B  GLY      3.6    12.1    -      -       -      +
     80B  ALA*     3.8    13.7    -      -       +      +
    152D  TRP*     3.1    35.4    -      -       +      +
    159D  GLN*     5.5     2.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLN 75 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      6B  THR*     4.0    19.8    +      -       -      +
      8B  ASN*     4.3     7.9    -      -       -      +
     68B  THR      5.2     0.6    +      -       -      -
     71B  GLU*     3.0    40.4    +      -       -      +
     72B  ARG*     3.1    44.7    +      -       -      +
     74B  VAL*     1.3    76.4    -      -       -      +
     76B  LEU*     1.3    59.3    +      -       -      +
     77B  GLY      3.2     3.0    +      -       -      -
    139B  ILE*     5.5     0.7    -      -       -      +
    145D  ARG*     4.6     3.5    +      -       -      +
    148D  ASP*     3.7    16.1    -      -       +      +
    149D  LYS*     3.9    21.2    +      -       -      +
    152D  TRP*     3.6    38.8    -      -       +      +
    155D  GLU*     5.2     0.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 76 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      3B  THR*     5.1     1.0    +      -       -      -
      6B  THR*     4.5     3.9    -      -       -      +
      8B  ASN*     3.9    26.9    -      -       -      +
     10B  LEU*     4.0    23.3    -      -       +      -
     15B  LYS*     3.3    32.0    -      -       +      +
     18B  VAL*     4.2    18.2    -      -       +      -
     19B  ILE*     3.7    19.5    -      -       +      +
     22B  LEU*     4.4     4.9    -      -       +      -
     72B  ARG*     3.2    40.2    +      -       +      +
     73B  VAL      3.2     4.9    +      -       -      +
     74B  VAL      3.1     1.0    -      -       -      -
     75B  GLN*     1.3    75.3    -      -       -      +
     77B  GLY*     1.3    60.2    +      -       -      +
     78B  GLY      3.4     1.8    -      -       -      -
    133B  ASP*     3.9    18.6    -      -       -      +
    136B  THR*     4.2     0.2    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il