Contacts of the helix formed by residues 33 - 61 (chain I) in PDB entry 1Q0K
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 33 (chain I).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31I ASN* 3.0 24.6 + - - +
32I ASP* 1.3 80.1 + - - +
34I LEU* 1.3 73.8 + - - +
35I HIS* 3.9 20.0 + - - +
36I PHE* 3.1 14.8 + - + +
37I GLN* 2.9 19.9 + - - +
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Residues in contact with LEU 34 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32I ASP 3.2 6.0 + - - -
33I ASP* 1.3 75.8 + - - +
35I HIS* 1.3 71.4 + - + +
37I GLN* 3.0 9.4 + - + +
38I ILE* 2.9 51.4 + - + +
34K LEU* 4.1 35.9 - - + -
34L LEU* 4.1 19.5 - - + -
37L GLN* 4.7 13.0 - - + -
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Residues in contact with HIS 35 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33I ASP* 3.3 16.6 + - - +
34I LEU* 1.3 90.0 - - + +
36I PHE* 1.3 62.7 + - - +
38I ILE* 3.3 9.6 + - + +
39I ARG* 3.1 32.8 + - + +
28L MET* 4.3 5.8 - - + -
37L GLN* 2.7 30.2 + - - +
41L THR* 4.3 8.7 - - + +
90L ALA 6.0 2.2 - - - +
92L THR* 3.3 38.5 + - + +
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Residues in contact with PHE 36 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4G LEU* 3.6 37.5 - - + -
5G PRO* 5.6 0.9 - - + -
27I LYS* 3.5 48.5 - - + -
28I MET* 3.8 8.3 - - - -
31I ASN* 3.2 48.7 - - + +
33I ASP* 3.1 17.2 + - + +
35I HIS* 1.3 77.9 - - - +
37I GLN* 1.3 60.8 + - - +
39I ARG* 3.4 11.2 + - - +
40I ALA* 2.8 38.0 + - + +
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Residues in contact with GLN 37 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28I MET* 2.9 40.4 + - - +
31I ASN 2.7 25.9 + - - +
32I ASP* 3.7 14.4 - - + +
33I ASP 2.9 18.1 + - - +
34I LEU* 3.0 12.5 + - + +
36I PHE* 1.3 78.2 - - - +
38I ILE* 1.3 56.7 + - - +
40I ALA* 4.5 0.2 - - - -
41I THR* 2.7 34.6 + - - -
34K LEU* 5.1 7.0 - - + -
35K HIS* 2.5 40.9 + - + +
38K ILE* 4.2 9.0 - - + -
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Residues in contact with ILE 38 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34I LEU* 2.9 45.0 + - + +
35I HIS* 3.6 9.2 - - + +
36I PHE 3.2 0.2 - - - -
37I GLN* 1.3 76.6 - - - +
39I ARG* 1.3 57.3 + - - +
41I THR* 3.2 3.1 + - - -
42I VAL* 2.9 43.6 + - + +
38K ILE* 4.0 21.7 - - + +
37L GLN* 4.1 2.9 - - + +
38L ILE* 3.9 43.1 - - + +
41L THR* 3.5 37.5 - - + +
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Residues in contact with ARG 39 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3G ASP 2.8 27.7 + - - -
4G LEU* 2.6 35.1 + - + +
35I HIS* 3.1 21.8 + - - +
36I PHE* 3.9 10.6 - - - +
38I ILE* 1.3 77.5 - - - +
40I ALA* 1.3 58.3 + - - +
42I VAL* 3.4 5.5 + - - +
43I ILE* 2.9 37.2 + - + +
41L THR* 3.4 21.5 - - + -
44L LYS* 5.2 0.2 - - - +
45L GLU* 2.8 36.8 + - - +
86L SER 5.2 0.2 + - - -
89L LYS* 3.2 29.8 + - - +
90L ALA* 3.7 23.1 - - - +
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Residues in contact with ALA 40 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4G LEU* 3.9 18.1 - - + +
24I ILE* 3.5 12.8 - - + +
28I MET* 3.5 34.8 - - + -
36I PHE* 2.8 28.0 + - + +
39I ARG* 1.3 73.7 - - - +
41I THR* 1.3 57.3 + - - +
43I ILE* 3.8 0.8 - - - -
44I LYS* 2.9 32.8 + - - +
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Residues in contact with THR 41 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28I MET* 3.4 15.5 - - - +
37I GLN 2.7 23.7 + - - -
38I ILE 3.5 4.0 - - - -
40I ALA* 1.3 73.9 - - - +
42I VAL* 1.3 65.8 + - - +
44I LYS* 3.3 13.4 + - - +
45I GLU* 3.0 26.2 + - - +
35K HIS* 4.0 7.5 - - + +
38K ILE* 3.5 32.6 - - + +
39K ARG* 3.6 30.3 - - + +
42K VAL* 5.7 0.7 - - + -
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Residues in contact with VAL 42 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38I ILE* 2.9 26.6 + - + +
39I ARG* 3.7 7.0 - - - +
41I THR* 1.3 78.0 - - - +
43I ILE* 1.3 63.1 - - + +
45I GLU* 3.5 6.6 + - - +
46I GLN* 3.1 44.1 + - - +
38K ILE* 5.0 0.9 - - + -
42K VAL* 3.7 22.2 - - + -
41L THR* 5.8 0.2 - - + -
42L VAL* 3.4 46.4 - - + +
45L GLU* 5.4 9.6 - - + -
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Residues in contact with ILE 43 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2G CYS* 3.3 50.5 - - + +
4G LEU* 3.5 31.4 - - + -
24I ILE* 3.7 9.0 - - + -
39I ARG* 2.9 24.0 + - - +
40I ALA* 4.1 3.1 - - - +
42I VAL* 1.3 79.2 - - + +
44I LYS* 1.3 63.2 + - - +
46I GLN* 3.4 15.5 + - - +
47I ARG* 2.9 34.3 + - - +
45L GLU* 3.6 25.4 - - + +
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Residues in contact with LYS 44 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21I VAL* 4.0 20.9 - - + +
24I ILE* 3.9 17.2 - - + +
25I GLN* 3.5 27.8 - - + +
28I MET* 3.8 24.0 - - - -
40I ALA 2.9 17.8 + - - +
41I THR* 3.3 11.4 + - - +
43I ILE* 1.3 74.5 - - - +
45I GLU* 1.3 66.2 + - - +
47I ARG* 4.0 3.1 - - - +
48I ALA* 3.0 23.7 + - - +
88I ALA 3.1 8.4 + - - +
89I LYS* 2.7 32.6 + - - -
90I ALA 4.9 0.2 - - - -
91I SER 3.0 21.7 + - - -
92I THR* 5.0 2.1 - - - +
39K ARG* 5.2 1.2 - - - +
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Residues in contact with GLU 45 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2H CYS 5.0 1.0 - - - +
3H ASP 4.5 0.7 - - - +
41I THR* 3.0 17.0 + - - +
42I VAL* 3.5 8.3 - - - +
43I ILE 3.2 0.2 - - - -
44I LYS* 1.3 79.8 + - - +
46I GLN* 1.3 57.7 + - + +
49I GLU* 3.0 29.7 + - + +
89I LYS* 3.3 40.2 + - + +
39K ARG* 3.0 50.1 + - - +
42K VAL* 5.4 9.9 - - + -
43K ILE* 3.7 20.7 - - + +
46K GLN* 6.0 4.5 - - - +
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Residues in contact with GLN 46 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42I VAL* 3.1 30.5 + - + +
43I ILE* 3.8 22.0 - - - +
44I LYS 3.3 0.4 - - - -
45I GLU* 1.3 76.5 - - + +
47I ARG* 1.3 78.2 + - - +
49I GLU* 3.4 5.8 + - - +
50I LEU* 3.1 29.6 + - + +
46K GLN* 5.6 7.8 - - - +
45L GLU* 6.0 1.2 - - - +
46L GLN* 5.7 7.3 - - - +
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Residues in contact with ARG 47 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1G HIS* 3.4 14.6 + - - -
2G CYS* 3.7 24.3 - - + +
7007G THJ 2.5 55.3 + - - -
17I GLU* 2.9 58.1 + - - +
20I SER* 4.1 15.3 - - - -
21I VAL* 3.8 9.6 - - + -
24I ILE* 4.2 5.4 - - + -
43I ILE* 2.9 29.3 + - + +
44I LYS 4.0 0.4 - - - +
46I GLN* 1.3 89.8 + - - +
48I ALA* 1.3 58.9 + - - +
50I LEU* 3.3 11.8 + - - +
51I ALA* 3.0 23.9 + - - +
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Residues in contact with ALA 48 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21I VAL* 3.6 18.1 - - + +
44I LYS 3.0 18.4 + - - +
45I GLU 3.8 0.4 - - - +
47I ARG* 1.3 75.6 - - - +
49I GLU* 1.3 59.7 + - - +
51I ALA* 3.3 5.8 + - - +
52I LYS* 2.9 35.0 + - - +
85I LEU* 4.0 16.6 - - + +
89I LYS* 3.4 30.1 - - + +
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Residues in contact with GLU 49 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3H ASP* 4.4 0.9 - - - +
53H HIS* 4.0 21.3 - - - -
57H VAL* 5.9 0.2 - - - +
7008H THJ 5.0 5.5 - - - -
45I GLU* 3.0 18.0 + - + +
46I GLN* 3.6 8.3 - - - +
47I ARG 3.3 0.2 - - - -
48I ALA* 1.3 75.8 - - - +
50I LEU* 1.3 61.0 + - + +
52I LYS* 3.2 14.9 + - - +
53I HIS* 2.9 30.9 + - + +
89I LYS* 2.7 33.4 + - - +
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Residues in contact with LEU 50 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7007G THJ 3.7 18.6 - - - +
17I GLU* 3.8 15.0 - - + +
46I GLN* 3.1 18.5 + - + +
47I ARG* 3.3 43.5 - - - +
48I ALA 3.3 0.2 - - - -
49I GLU* 1.3 76.3 - - + +
51I ALA* 1.3 57.4 + - - +
53I HIS* 3.0 10.0 + - + +
54I HIS* 2.9 43.5 + - + +
7009I THJ 4.6 15.5 - - - +
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Residues in contact with ALA 51 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14I ALA* 3.9 22.1 - - + +
17I GLU* 3.9 10.2 - - + +
18I ALA* 4.3 4.7 - - + +
47I ARG 3.0 13.7 + - - +
48I ALA* 3.4 9.4 - - - +
50I LEU* 1.3 76.7 - - - +
52I LYS* 1.3 62.2 + - - +
54I HIS* 3.2 8.2 + - - +
55I LEU* 3.1 25.5 + - - +
85I LEU* 3.6 24.7 - - + -
104I ILE* 5.4 0.4 - - + -
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Residues in contact with LYS 52 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3H ASP* 2.9 19.7 + - - +
60H SER* 4.1 5.3 + - - -
61H ASP* 3.1 22.2 + - - -
48I ALA 2.9 20.0 + - - +
49I GLU* 3.5 20.4 + - - +
51I ALA* 1.3 75.6 - - - +
53I HIS* 1.3 57.4 + - - +
55I LEU* 3.2 2.8 + - - +
56I ASP* 2.8 40.9 + - - +
82I VAL* 3.6 29.4 - - + +
85I LEU* 3.4 26.2 - - + +
86I SER* 2.9 27.5 + - - +
89I LYS* 4.3 5.4 - - - -
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Residues in contact with HIS 53 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49H GLU* 4.1 18.6 - - - -
53H HIS* 5.8 4.4 + - - -
56H ASP* 5.9 0.6 + - - -
1I HIS 5.6 0.6 + - - -
49I GLU* 2.9 16.1 + - + +
50I LEU* 3.0 15.2 + - + +
52I LYS* 1.3 77.6 - - - +
54I HIS* 1.3 77.5 + + - +
56I ASP* 3.2 12.3 + - - +
57I VAL* 3.0 46.9 + - + +
7009I THJ 3.0 42.8 + - - -
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Residues in contact with HIS 54 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1I HIS* 5.6 0.8 - - - +
10I ASP 6.0 0.2 - - - +
13I GLN* 3.6 56.1 + - + +
14I ALA* 3.7 17.9 - - + +
17I GLU* 4.2 11.9 + - + +
50I LEU* 2.9 32.4 + - + +
51I ALA 3.2 4.9 + - - +
53I HIS* 1.3 85.8 - + - +
55I LEU* 1.3 62.7 + - - +
57I VAL* 3.4 8.8 + - - +
58I LEU* 3.2 26.2 + - + +
7009I THJ 3.6 30.1 - - - -
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Residues in contact with LEU 55 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11I PRO* 5.8 0.7 - - + -
14I ALA* 3.8 18.6 - - + -
51I ALA 3.1 8.4 + - - +
52I LYS 3.6 6.1 - - - +
54I HIS* 1.3 73.3 - - - +
56I ASP* 1.3 67.6 + - - +
58I LEU* 3.3 20.1 + - + +
59I TRP* 3.1 24.3 + - - +
78I VAL* 4.0 8.8 - - + +
81I ALA* 3.9 25.4 - - + -
82I VAL* 3.9 13.0 - - + -
85I LEU* 3.8 28.5 - - + -
104I ILE* 4.2 19.3 - - + -
107I ILE* 4.1 21.1 - - + -
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Residues in contact with ASP 56 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53H HIS* 5.9 0.9 + - - -
56H ASP* 3.5 38.2 - - - +
59H TRP* 4.0 15.1 - - - -
60H SER* 4.8 5.6 + - - -
52I LYS* 2.8 31.4 + - - +
53I HIS* 3.5 13.6 + - - +
55I LEU* 1.3 77.6 - - - +
57I VAL* 1.3 57.3 + - + +
59I TRP* 3.4 9.6 + - - +
60I SER* 2.8 33.7 + - - -
78I VAL* 5.4 0.2 - - - -
82I VAL* 3.7 17.0 - - - +
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Residues in contact with VAL 57 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52H LYS* 6.3 0.7 - - - +
1I HIS* 3.6 44.9 - - + +
9I TYR* 4.1 4.0 - - + -
53I HIS* 3.0 41.8 + - + +
54I HIS* 3.6 10.3 - - - +
55I LEU 3.2 0.2 - - - -
56I ASP* 1.3 73.3 - - + +
58I LEU* 1.3 60.3 + - + +
60I SER* 3.6 6.7 - - - +
61I ASP* 2.7 48.5 + - + +
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Residues in contact with LEU 58 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9I TYR* 4.1 20.4 - - + -
10I ASP 4.5 7.2 - - - +
11I PRO* 3.7 32.8 - - + -
14I ALA* 5.6 0.4 - - + -
54I HIS* 3.2 16.7 + - + +
55I LEU* 3.3 24.2 + - + +
57I VAL* 1.3 78.5 - - + +
59I TRP* 1.3 61.4 + - - +
62I TYR* 3.1 12.9 + - + +
63I PHE* 3.0 42.7 + - + -
78I VAL* 6.4 0.2 - - + -
107I ILE* 4.5 10.3 - - + -
111I PHE* 4.1 26.7 - - + -
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Residues in contact with TRP 59 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56H ASP* 4.0 18.2 - - - -
59H TRP* 3.5 54.0 - + - -
75H HIS 3.7 8.3 - - - -
78H VAL* 3.7 17.9 - - + -
79H ASN* 2.9 64.6 + - + -
82H VAL* 4.2 5.4 - - + -
83H LYS* 3.7 2.6 + - - -
55I LEU 3.1 13.9 + - - +
56I ASP* 3.6 7.4 - - - +
58I LEU* 1.3 82.0 - - - +
60I SER* 1.3 74.3 + - - +
63I PHE* 3.8 9.9 - - - +
68I PHE* 3.6 23.4 - + - -
75I HIS* 2.9 25.9 + - - +
78I VAL* 3.8 24.0 - - + -
----------------------------------------------------------
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Residues in contact with SER 60 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52H LYS* 4.1 8.3 + - - -
56H ASP* 4.7 6.3 + - - -
79H ASN* 4.1 6.5 - - - +
82H VAL* 3.6 27.9 - - - +
83H LYS* 2.8 34.0 + - - +
86H SER* 5.5 0.3 + - - -
56I ASP 2.8 24.0 + - - -
57I VAL* 3.4 6.8 + - - +
59I TRP* 1.3 82.3 - - - +
61I ASP* 1.3 77.4 + - - +
----------------------------------------------------------
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Residues in contact with ASP 61 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52H LYS* 2.9 19.5 + - - -
83H LYS* 4.8 0.5 + - - -
86H SER* 3.9 4.5 + - - -
1I HIS 4.6 0.2 - - - +
3I ASP* 3.1 38.6 + - - +
5I PRO* 6.3 0.4 - - + -
9I TYR* 3.4 20.8 + - + +
57I VAL* 2.7 29.8 + - + +
60I SER* 1.3 92.4 + - - +
62I TYR* 1.3 65.2 + - - +
63I PHE 4.5 0.7 - - - -
64I LYS* 3.5 18.7 + - - +
9009I SO4 3.9 5.5 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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