Contacts of the helix formed by residues 83 - 112 (chain L) in PDB entry 1RZZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 83 (chain L).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67L TYR 3.5 15.3 + - - -
68L PRO 3.6 0.2 - - - -
69L PRO* 3.3 32.6 - - - +
80L LEU 3.8 1.6 + - - -
81L ALA 3.7 2.2 - - - -
82L LYS* 1.3 75.6 - - - +
84L GLY* 1.3 64.3 + - - +
85L LEU 3.4 2.0 - - - -
86L TRP* 3.4 4.9 + - - +
87L GLN* 3.2 24.3 + - - +
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Residues in contact with GLY 84 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78L ALA 3.2 22.1 + - - -
79L PRO 3.2 10.3 + - - -
80L LEU* 4.0 8.7 - - - -
82L LYS 3.7 0.2 - - - -
83L GLY* 1.3 75.9 - - - +
85L LEU* 1.3 64.0 + - - +
87L GLN* 3.1 23.6 + - - +
88L ILE* 3.1 22.0 + - - +
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Residues in contact with LEU 85 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48L LEU* 3.8 31.6 - - + +
51L TRP* 3.5 44.6 - - + -
52L SER* 3.6 32.8 - - - +
55L LEU* 4.3 8.1 - - + -
66L VAL* 4.6 8.1 - - + -
80L LEU* 3.0 34.6 + - + +
81L ALA* 5.2 0.9 - - - -
84L GLY* 1.3 75.2 - - - +
86L TRP* 1.3 56.6 + - - +
88L ILE* 3.4 5.2 + - + +
89L ILE* 2.9 38.2 + - + +
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Residues in contact with TRP 86 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66L VAL* 3.4 34.1 - - + +
67L TYR 3.1 21.3 + - - +
68L PRO* 3.5 26.5 - - + -
69L PRO* 4.0 0.7 - - + -
83L GLY 3.4 5.4 + - - +
84L GLY 3.2 0.4 - - - -
85L LEU* 1.3 78.8 - - - +
87L GLN* 1.3 72.1 + - + +
89L ILE* 3.9 2.9 - - - +
90L THR* 2.7 47.9 + - + -
132L VAL* 3.2 40.4 - - + -
142L TRP* 4.1 23.6 - + + -
145L ALA* 3.5 27.1 - - + -
146L PHE 3.2 18.2 + - - -
148L TYR* 3.3 26.2 - + - -
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Residues in contact with GLN 87 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69L PRO* 3.6 16.1 - - + +
76L GLY 3.1 19.1 - - - +
77L GLY* 3.5 5.8 - - - -
78L ALA 3.3 28.1 - - - +
83L GLY 3.2 10.0 + - - +
84L GLY* 3.1 19.1 + - - +
86L TRP* 1.3 95.7 - - + +
88L ILE* 1.3 61.9 + - + +
90L THR* 3.6 4.0 + - - -
91L ILE* 3.4 27.7 + - + +
142L TRP* 3.3 19.6 + - + -
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Residues in contact with ILE 88 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44L LEU* 5.3 4.3 - - + -
48L LEU* 3.4 28.0 - - + -
80L LEU* 4.1 22.2 - - + -
84L GLY 3.1 16.7 + - - +
85L LEU* 4.0 4.7 - - + +
87L GLN* 1.3 74.8 - - + +
89L ILE* 1.3 65.6 + - - +
91L ILE* 3.1 15.3 + - + +
92L CYS* 3.0 27.5 + - - -
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Residues in contact with ILE 89 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45L GLY* 4.2 6.5 - - - +
48L LEU* 3.7 24.2 - - + +
49L ILE* 3.5 43.7 - - + +
66L VAL* 3.9 22.7 - - + -
85L LEU* 2.9 28.0 + - + +
86L TRP 3.9 3.8 - - - +
88L ILE* 1.3 76.7 - - - +
90L THR* 1.3 55.9 + - - +
92L CYS* 3.0 9.5 + - - +
93L ALA* 2.8 27.0 + - - +
148L TYR* 4.0 20.6 - - + -
1006M BPH 4.2 16.8 - - + +
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Residues in contact with THR 90 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86L TRP* 2.7 37.4 + - + -
87L GLN* 3.7 7.0 - - - -
88L ILE 3.2 0.2 - - - -
89L ILE* 1.3 76.6 - - - +
91L ILE* 1.3 60.7 + - + +
93L ALA* 3.2 2.4 + - - +
94L THR* 2.9 39.4 + - - +
128L TYR* 3.4 14.5 + - + +
129L LEU* 5.7 1.3 - - + -
132L VAL* 3.1 28.7 - - + -
133L LEU* 6.1 1.1 - - + -
142L TRP* 6.3 0.9 - - + -
148L TYR* 2.7 17.6 + - - -
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Residues in contact with ILE 91 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41L PHE* 4.9 7.6 - - + -
87L GLN* 3.4 15.2 + - + +
88L ILE* 3.1 18.0 + - + +
90L THR* 1.3 79.5 - - + +
92L CYS* 1.3 62.1 + - - +
94L THR* 3.3 6.4 + - - -
95L GLY* 2.8 27.5 + - - -
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Residues in contact with CYS 92 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41L PHE* 3.3 34.2 - - - +
44L LEU* 3.7 36.1 - - - -
45L GLY* 3.9 15.0 - - - -
48L LEU* 4.6 0.9 - - - -
88L ILE* 3.0 27.2 + - - -
89L ILE* 3.0 8.0 + - - +
91L ILE* 1.3 79.4 - - - +
93L ALA* 1.3 58.2 + - - +
96L ALA* 2.8 30.5 + - - +
1006M BPH 4.1 2.6 - - + +
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Residues in contact with ALA 93 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89L ILE 2.8 14.4 + - - +
90L THR* 3.5 0.4 - - - +
92L CYS* 1.3 74.9 - - - +
94L THR* 1.3 60.9 + - - +
96L ALA* 3.1 1.8 + - - -
97L PHE* 2.8 56.6 + - + -
128L TYR* 3.5 23.1 - - + +
1006M BPH 3.9 27.8 - - + +
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Residues in contact with THR 94 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90L THR* 2.9 23.5 + - - +
91L ILE* 3.7 6.5 - - - -
93L ALA* 1.3 74.9 - - - +
95L GLY* 1.3 57.6 + - - +
97L PHE* 3.8 8.8 - - - +
98L VAL* 2.9 49.0 + - + +
125L ILE* 5.3 1.3 - - + -
128L TYR* 3.7 4.5 - - - -
129L LEU* 3.3 38.5 - - + +
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Residues in contact with GLY 95 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41L PHE* 3.4 23.7 - - - -
91L ILE 2.8 17.6 + - - -
92L CYS 3.8 1.1 - - - -
94L THR* 1.3 78.5 - - - +
96L ALA* 1.3 55.5 + - - +
98L VAL* 4.1 4.5 - - - +
99L SER* 2.8 34.5 + - - -
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Residues in contact with ALA 96 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38L THR* 3.7 9.0 + - + +
41L PHE* 3.7 17.9 - - + +
42L ALA* 4.2 8.7 - - - +
92L CYS 2.8 19.0 + - - +
93L ALA* 3.1 6.3 + - - +
95L GLY* 1.3 75.7 - - - +
97L PHE* 1.3 61.5 + - + +
99L SER* 3.4 2.4 + - - -
100L TRP* 2.9 28.8 + - - +
1006M BPH 4.1 28.1 - - + +
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Residues in contact with PHE 97 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93L ALA* 2.8 35.5 + - + +
94L THR* 3.8 4.5 - - - +
96L ALA* 1.3 77.2 - - + +
98L VAL* 1.3 64.9 + - - +
100L TRP* 3.2 5.2 + - - +
101L ALA 3.1 16.3 + - - -
121L PHE* 3.5 9.7 - - + -
125L ILE* 3.6 23.2 - - + +
128L TYR* 3.8 37.0 - + - -
1002L BCL 3.6 64.6 - - + -
1004L BCL 4.1 6.5 - - + -
1006M BPH 3.6 36.6 - - + -
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Residues in contact with VAL 98 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94L THR* 2.9 34.5 + - + +
95L GLY* 4.1 4.5 - - - +
97L PHE* 1.3 74.4 - - - +
99L SER* 1.3 59.2 + - - +
101L ALA* 3.2 5.6 + - + +
102L LEU* 2.9 47.8 + - + +
125L ILE* 4.3 20.4 - - + -
129L LEU* 5.8 0.9 - - + -
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Residues in contact with SER 99 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34L PHE* 3.4 26.7 - - - +
37L ALA* 3.6 17.2 - - - +
38L THR* 3.1 26.0 + - - -
41L PHE* 3.6 7.4 - - - -
95L GLY 2.8 22.8 + - - -
96L ALA 3.7 1.3 - - - -
98L VAL* 1.3 74.8 - - - +
100L TRP* 1.3 59.8 + - - +
103L ARG* 2.9 30.0 + - - +
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Residues in contact with TRP 100 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29L PHE* 5.4 2.0 - + - -
38L THR* 3.4 28.2 + - + -
96L ALA 2.9 17.9 + - - +
97L PHE 3.2 6.2 + - - +
99L SER* 1.3 76.4 - - - +
101L ALA* 1.3 57.3 + - - +
103L ARG* 3.4 23.9 + - - +
104L GLU* 3.0 44.9 + - - +
121L PHE* 3.6 18.2 - + + -
255M THR* 3.3 38.3 - - + +
256M MET* 4.6 0.7 - - - -
1006M BPH 3.0 55.6 + - + +
1008M U10 3.7 38.4 - - + -
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Residues in contact with ALA 101 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97L PHE 3.1 12.4 + - - +
98L VAL* 3.2 9.4 + - + +
100L TRP* 1.3 75.5 - - - +
102L LEU* 1.3 68.4 + - + +
104L GLU* 3.1 11.5 + - - +
105L VAL* 3.1 26.2 + - - +
118L PRO* 3.5 14.2 - - + +
121L PHE* 3.8 21.2 - - + -
122L ALA* 5.6 1.8 - - + +
125L ILE* 4.2 9.9 - - + -
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Residues in contact with LEU 102 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16L LEU* 4.4 9.0 - - + +
34L PHE* 3.6 49.2 - - + -
98L VAL* 2.9 40.7 + - + +
99L SER* 3.9 0.7 - - - +
101L ALA* 1.3 79.1 - - + +
103L ARG* 1.3 62.4 + - - +
105L VAL* 3.1 23.6 + - + +
106L GLU* 3.2 17.2 + - - +
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Residues in contact with ARG 103 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29L PHE* 3.9 13.1 - - - +
30L TYR* 2.8 33.5 + - + +
31L VAL 3.8 8.4 + - - +
34L PHE* 3.9 14.6 - - + +
35L GLY* 3.6 24.1 - - - -
38L THR* 5.1 0.9 - - - -
99L SER 2.9 19.0 + - - +
100L TRP* 3.5 36.4 + - - +
101L ALA 3.2 0.2 - - - -
102L LEU* 1.3 73.6 - - - +
104L GLU* 1.3 65.4 + - - +
106L GLU* 3.3 8.9 + - - +
107L ILE* 3.0 35.0 + - + +
254M TRP 2.8 22.9 + - - -
255M THR* 2.8 33.2 + - - +
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Residues in contact with GLU 104 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100L TRP* 3.0 30.4 + - + +
101L ALA* 3.1 7.7 + - - +
103L ARG* 1.3 78.9 - - + +
105L VAL* 1.3 57.0 + - - +
107L ILE* 3.3 11.0 + - - +
108L CYS* 3.0 32.3 + - - -
117L ILE* 4.0 0.4 - - - +
118L PRO* 3.4 27.4 - - + +
121L PHE* 3.9 8.8 - - - -
251M PHE* 3.5 24.7 - - + -
252M TRP* 4.0 0.9 - - - -
255M THR* 3.7 20.0 - - + +
1006M BPH 2.7 40.7 - - - +
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Residues in contact with VAL 105 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16L LEU* 3.9 20.4 - - + -
101L ALA 3.1 16.5 + - - +
102L LEU* 3.3 20.6 - - + +
104L GLU* 1.3 75.4 - - - +
106L GLU* 1.3 62.8 + - - +
108L CYS* 3.3 7.8 + - - +
109L ARG* 2.9 33.3 + - - +
115L TYR* 3.6 22.7 - - + -
118L PRO* 3.8 19.1 - - + -
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Residues in contact with GLU 106 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14L GLY 3.8 14.0 - - - +
15L THR* 3.2 13.7 - - - -
16L LEU* 2.6 43.6 + - + +
17L VAL 3.5 9.5 + - - +
30L TYR* 4.0 16.2 - - + +
31L VAL 4.5 1.0 - - - +
32L GLY* 3.6 24.8 - - - -
33L PHE 3.9 4.8 + - - -
34L PHE* 4.1 17.1 + - + -
102L LEU 3.2 13.5 + - - +
103L ARG* 3.3 9.2 + - - +
105L VAL* 1.3 75.1 - - - +
107L ILE* 1.3 63.6 + - - +
109L ARG* 3.2 3.6 + - - +
110L LYS* 3.0 23.7 + - - +
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Residues in contact with ILE 107 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30L TYR* 3.7 24.5 - - + -
103L ARG* 3.0 27.0 + - + +
104L GLU* 3.5 9.2 - - - +
105L VAL 3.2 0.2 - - - -
106L GLU* 1.3 77.2 - - - +
108L CYS* 1.3 60.7 + - - +
110L LYS* 3.4 6.1 + - - +
111L LEU* 3.2 24.9 + - + +
251M PHE* 3.8 30.5 - - + +
254M TRP* 3.9 31.4 - - + +
255M THR* 3.3 36.8 - - - +
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Residues in contact with CYS 108 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104L GLU 3.0 23.6 + - - -
105L VAL 3.5 7.6 - - - +
106L GLU 3.2 0.2 - - - -
107L ILE* 1.3 75.9 - - - +
109L ARG* 1.3 53.6 + - - +
111L LEU 3.3 1.6 + - - -
112L GLY* 2.8 30.3 + - - -
113L ILE* 3.1 25.2 + - - +
114L GLY 3.3 24.9 - - - +
115L TYR* 3.7 20.6 - - + -
117L ILE* 5.4 0.7 - - - -
118L PRO* 4.0 17.0 - - - -
251M PHE* 3.7 19.5 - - - -
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Residues in contact with ARG 109 (chain L).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111H PRO* 4.4 1.7 - - - +
242H MET* 3.8 13.5 - - - +
14L GLY* 2.8 39.9 + - - +
15L THR 3.0 17.2 + - - -
16L LEU* 3.3 30.0 - - - +
105L VAL* 2.9 20.4 + - - +
106L GLU* 3.2 5.4 + - - +
108L CYS* 1.3 73.5 - - - +
110L LYS* 1.3 66.1 + - - +
112L GLY* 3.3 11.4 + - - +
115L TYR* 3.3 27.6 + - + +
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Residues in contact with LYS 110 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110H GLY 4.7 1.0 - - - -
111H PRO* 3.3 26.2 - - - +
242H MET* 3.9 2.9 - - - -
9L TYR 4.1 7.6 - - - +
11L VAL* 2.7 36.0 + - + +
13L GLY 2.8 33.9 + - - +
14L GLY* 4.2 0.6 - - - -
23L ASP* 2.9 30.9 + - - -
25L TRP* 3.6 21.7 - - + -
30L TYR* 3.8 14.8 - - - -
106L GLU 3.0 15.1 + - - +
107L ILE* 3.9 5.8 - - - +
109L ARG* 1.3 76.3 - - - +
111L LEU* 1.3 58.7 + - - +
254M TRP* 3.5 27.8 - - + -
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Residues in contact with LEU 111 (chain L).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111H PRO* 4.3 4.7 - - - -
9L TYR* 4.1 26.9 - - + +
107L ILE* 3.2 22.3 + - + +
108L CYS 4.0 2.7 - - - +
110L LYS* 1.3 77.7 - - - +
112L GLY* 1.3 55.2 + - - +
113L ILE* 3.3 13.9 + - + -
247M ARG* 2.7 51.3 + - + +
250M LEU* 4.0 10.1 - - + -
251M PHE* 3.5 40.8 - - + +
254M TRP* 3.5 31.0 - - + -
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Residues in contact with GLY 112 (chain L).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111H PRO* 4.1 10.9 - - - +
238H ALA* 3.9 13.7 - - - +
241H LEU* 4.2 11.8 - - - +
108L CYS 2.8 8.4 + - - -
109L ARG* 3.3 11.6 + - - -
110L LYS 3.4 1.0 + - - -
111L LEU* 1.3 78.3 - - - +
113L ILE* 1.3 59.1 + - - -
228M ARG* 2.8 26.3 + - - -
229M PHE* 3.9 1.0 - - - -
247M ARG* 4.1 5.4 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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