Contacts of the helix formed by residues 571 - 619 (chain A) in PDB entry 1TF5
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 571 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
569A ILE* 3.9 9.1 - - - +
570A GLN* 1.3 76.8 - - - +
572A LYS* 1.3 57.7 + - - +
573A MET* 3.0 21.0 + - - +
574A VAL* 3.1 28.8 + - - +
575A SER* 2.9 31.6 + - - -
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Residues in contact with LYS 572 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
571A SER* 1.3 70.7 + - - +
573A MET* 1.3 66.0 + - - +
575A SER* 4.0 5.9 - - - -
576A ARG* 3.1 24.6 + - - +
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Residues in contact with MET 573 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554A THR* 5.0 11.2 - - + +
557A MET* 5.3 12.6 - - - -
558A LEU* 6.0 0.9 - - + -
571A SER* 3.0 7.0 + - - +
572A LYS* 1.3 81.3 - - - +
574A VAL* 1.3 78.7 + - + +
576A ARG* 4.0 4.0 - - - +
577A ALA* 3.1 22.6 + - + +
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Residues in contact with VAL 574 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407A ILE* 3.7 28.0 - - + -
554A THR* 4.1 9.0 - - + -
555A MET* 3.9 18.8 - - + -
558A LEU* 4.0 18.8 - - + -
569A ILE* 4.0 14.4 - - + -
571A SER* 3.1 28.2 + - - +
573A MET* 1.3 88.9 - - + +
575A SER* 1.3 66.7 + - - +
577A ALA* 3.0 8.2 + - - +
578A VAL* 2.9 22.7 + - + +
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Residues in contact with SER 575 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
404A PRO* 5.1 9.4 - - - +
405A ASP* 4.6 23.5 + - - +
512A ARG* 5.4 0.9 + - - -
571A SER 2.9 19.6 + - - -
572A LYS* 4.0 7.2 - - - -
574A VAL* 1.3 76.1 - - - +
576A ARG* 1.3 58.9 + - - +
578A VAL* 3.4 9.1 + - - +
579A GLU* 2.9 27.6 + - - +
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Residues in contact with ARG 576 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
572A LYS 3.1 18.1 + - - +
573A MET* 4.0 3.8 - - - +
574A VAL 3.2 0.4 - - - -
575A SER* 1.3 75.1 - - - +
577A ALA* 1.3 61.1 + - - +
579A GLU* 3.2 10.6 + - + +
580A SER* 2.8 34.2 + - - +
583A LYS* 4.3 22.1 - - - +
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Residues in contact with ALA 577 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
550A GLY* 4.5 7.9 - - - +
551A ALA 4.2 3.7 + - - -
554A THR* 3.6 25.4 - - + +
573A MET* 3.1 14.9 + - + +
574A VAL* 3.0 11.1 + - - +
576A ARG* 1.3 76.2 - - - +
578A VAL* 1.3 62.3 + - + +
580A SER* 3.3 8.7 + - - -
581A SER* 3.1 23.9 + - - -
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Residues in contact with VAL 578 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405A ASP* 4.9 2.2 - - - +
407A ILE* 4.3 9.9 - - + -
512A ARG* 3.6 24.2 - - - +
539A LEU* 4.9 3.8 - - + -
545A LEU* 4.1 18.2 - - + +
546A MET* 3.9 27.8 - - + -
551A ALA* 4.8 5.8 - - + -
555A MET* 4.2 16.8 - - + -
574A VAL 2.9 17.3 + - - +
575A SER* 3.6 9.4 - - - +
577A ALA* 1.3 77.4 - - + +
579A GLU* 1.3 65.3 + - - +
581A SER* 3.2 7.7 + - - -
582A GLN* 3.0 21.1 + - - +
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Residues in contact with GLU 579 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512A ARG* 3.0 29.5 + - - -
516A ARG* 3.1 29.3 + - - +
575A SER 2.9 17.5 + - - +
576A ARG* 3.2 15.9 + - + +
578A VAL* 1.3 78.3 - - - +
580A SER* 1.3 56.5 + - - +
582A GLN* 3.3 3.5 + - - +
583A LYS* 3.0 52.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 580 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
550A GLY* 6.1 2.0 - - - -
576A ARG* 2.8 22.8 + - - +
577A ALA* 3.5 9.8 - - - -
578A VAL 3.2 0.2 - - - -
579A GLU* 1.3 77.4 - - - +
581A SER* 1.3 61.2 + - - +
583A LYS* 3.4 14.5 + - - +
584A ARG* 3.1 28.4 + - - +
----------------------------------------------------------
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Residues in contact with SER 581 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545A LEU* 4.2 10.1 - - - -
548A ARG* 4.4 7.6 - - - -
549A PHE* 3.5 5.9 - - - -
550A GLY* 2.9 13.0 + - - +
551A ALA* 2.7 43.0 + - - +
577A ALA 3.1 6.6 + - - -
578A VAL 3.2 8.0 + - - -
580A SER* 1.3 73.7 - - - +
582A GLN* 1.3 55.2 + - - +
584A ARG* 3.0 10.1 + - - +
585A VAL* 2.8 38.8 + - - +
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Residues in contact with GLN 582 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512A ARG* 3.5 25.4 - - - +
513A HIS 3.3 13.7 + - - +
514A GLU* 2.5 38.9 + - - +
515A SER* 3.6 1.4 - - - +
516A ARG* 3.6 18.6 - - + +
545A LEU* 3.4 29.6 - - + +
578A VAL 3.0 13.2 + - - +
579A GLU* 3.5 8.5 - - - +
581A SER* 1.3 78.0 - - - +
583A LYS* 1.3 57.3 + - - +
585A VAL* 3.1 8.7 + - - +
586A GLU* 2.9 39.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 583 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516A ARG* 3.3 37.5 - - - +
576A ARG* 4.3 24.9 - - - +
579A GLU* 3.0 37.0 + - - +
580A SER* 3.7 12.2 + - - +
581A SER 3.2 0.2 - - - -
582A GLN* 1.3 75.7 - - - +
584A ARG* 1.3 57.8 + - + +
586A GLU* 3.3 8.2 + - - +
587A GLY* 2.8 23.9 + - - -
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Residues in contact with ARG 584 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
549A PHE* 3.1 46.6 - - + -
580A SER* 3.1 17.0 + - - +
581A SER* 3.0 9.7 + - - +
583A LYS* 1.3 76.9 - - + +
585A VAL* 1.3 63.8 + - - +
587A GLY* 3.2 2.9 + - - +
588A ASN* 2.9 48.0 + - - -
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Residues in contact with VAL 585 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
514A GLU* 3.7 31.2 - - - +
545A LEU* 4.0 9.4 - - + -
548A ARG* 3.5 48.0 - - + +
549A PHE* 3.7 8.7 - - + -
581A SER 2.8 17.0 + - - +
582A GLN* 3.1 13.2 + - - +
584A ARG* 1.3 78.3 - - - +
586A GLU* 1.3 55.4 + - - +
588A ASN* 3.4 6.0 + - - +
589A ASN* 3.1 41.0 + - - +
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Residues in contact with GLU 586 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A THR* 4.0 10.4 - - - +
377A GLU* 4.1 9.6 - - - +
514A GLU 3.7 15.5 - - - +
515A SER* 4.2 8.7 - - - +
516A ARG* 3.0 67.0 + - - +
517A ARG* 5.9 0.6 - - - +
582A GLN* 2.9 19.7 + - - +
583A LYS* 3.6 8.3 - - - +
585A VAL* 1.3 74.0 - - - +
587A GLY* 1.3 66.1 + - - +
589A ASN* 3.4 8.7 + - - +
590A PHE* 3.0 24.8 + - - +
593A ARG* 4.6 8.4 + - - +
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Residues in contact with GLY 587 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583A LYS 2.8 15.2 + - - -
584A ARG* 3.2 5.3 + - - -
586A GLU* 1.3 77.4 - - - +
588A ASN* 1.3 60.7 + - - +
590A PHE* 3.3 9.3 + - - +
591A ASP* 3.1 27.7 + - - +
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Residues in contact with ASN 588 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548A ARG* 5.1 5.5 - - - +
549A PHE* 2.8 40.4 - - - -
584A ARG* 2.9 26.8 + - - +
585A VAL* 3.9 4.6 - - - +
586A GLU 3.3 0.2 - - - -
587A GLY* 1.3 74.8 - - - +
589A ASN* 1.3 67.1 + - - +
591A ASP* 3.1 15.0 + - - +
592A SER* 3.0 26.9 + - - +
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Residues in contact with ASN 589 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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514A GLU* 3.6 36.2 + - - +
548A ARG* 5.5 1.6 + - - -
585A VAL* 3.1 29.9 + - - +
586A GLU* 3.8 4.7 - - - +
587A GLY 3.3 0.2 - - - -
588A ASN* 1.3 78.7 - - - +
590A PHE* 1.3 57.1 + - - +
592A SER* 3.4 8.8 + - - -
593A ARG* 3.0 51.2 + - - +
----------------------------------------------------------
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Residues in contact with PHE 590 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A GLU* 5.6 1.3 - - - +
379A GLU* 5.3 16.4 - - + -
380A GLU* 3.2 58.8 - - + -
384A ILE* 5.8 0.9 - - + -
586A GLU 3.0 18.2 + - - +
587A GLY* 3.5 7.9 - - - +
588A ASN 3.1 0.2 - - - -
589A ASN* 1.3 76.0 - - - +
591A ASP* 1.3 66.9 + - - +
593A ARG* 3.3 12.2 + - + +
594A LYS* 3.0 46.9 + - + +
----------------------------------------------------------
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Residues in contact with ASP 591 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587A GLY 3.1 20.4 + - - +
588A ASN* 3.1 19.5 + - - +
590A PHE* 1.3 80.3 - - - +
592A SER* 1.3 66.9 + - - +
594A LYS* 3.4 9.8 + - - +
595A GLN* 3.0 24.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 592 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588A ASN* 3.0 15.3 + - - +
589A ASN* 3.5 12.4 + - - -
590A PHE 3.2 0.2 - - - -
591A ASP* 1.3 78.0 - - - +
593A ARG* 1.3 59.4 + - - +
595A GLN* 2.9 16.2 + - - +
596A LEU* 2.8 41.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 593 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214A ILE* 3.6 31.6 + - - +
215A ASP* 5.0 4.4 + - - +
218A ARG* 5.6 3.6 - - - +
377A GLU* 4.1 9.1 + - - -
380A GLU* 2.7 49.6 + - - +
384A ILE* 6.3 0.7 - - + -
515A SER* 6.0 2.4 - - - -
517A ARG* 4.9 8.3 - - - +
586A GLU* 4.6 10.1 + - - +
589A ASN* 3.0 32.9 + - - +
590A PHE* 3.3 27.8 + - + +
592A SER* 1.3 79.1 - - - +
594A LYS* 1.3 57.7 + - - +
596A LEU* 3.2 13.4 + - + +
597A LEU* 2.9 29.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 594 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383A ASN* 5.6 5.6 - - - +
384A ILE* 6.6 0.2 - - - -
590A PHE* 3.0 36.0 + - + +
591A ASP* 3.7 9.6 - - - +
592A SER 3.2 0.2 - - - -
593A ARG* 1.3 75.6 - - - +
595A GLN* 1.3 61.8 + - - +
597A LEU* 3.5 17.1 + - + +
598A GLN* 3.1 38.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 595 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591A ASP 3.0 12.2 + - - +
592A SER* 2.9 19.2 + - - +
594A LYS* 1.3 78.0 - - - +
596A LEU* 1.3 67.2 + - + +
598A GLN* 3.2 24.0 + - - +
599A TYR* 3.3 38.9 + - + -
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Residues in contact with LEU 596 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218A ARG* 3.7 42.2 - - - +
592A SER* 2.8 26.5 + - - +
593A ARG* 3.6 8.7 - - + +
595A GLN* 1.3 81.2 - - + +
597A LEU* 1.3 57.0 + - - +
599A TYR* 3.4 5.8 + - + +
600A ASP* 2.9 35.1 + - - +
735A ARG* 4.0 17.7 + - - +
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Residues in contact with LEU 597 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218A ARG* 5.6 0.2 - - - +
358A GLN* 3.9 21.1 - - - +
362A ARG* 3.6 22.7 - - - +
383A ASN* 4.7 9.4 - - - +
384A ILE* 4.3 24.7 - - + -
593A ARG 2.9 16.4 + - - +
594A LYS* 3.5 19.5 - - + +
596A LEU* 1.3 76.3 - - - +
598A GLN* 1.3 63.0 + - + +
600A ASP* 3.8 5.3 - - + +
601A ASP* 2.9 60.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 598 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
594A LYS* 3.1 34.3 + - + +
595A GLN* 3.2 16.3 + - - +
597A LEU* 1.3 80.0 - - + +
599A TYR* 1.3 64.0 + - + +
601A ASP* 3.7 14.6 + - - +
602A VAL* 3.8 10.9 - - - +
749A LEU* 4.0 34.1 - - + +
753A GLN* 4.7 6.4 + - - +
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Residues in contact with TYR 599 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
595A GLN* 3.3 40.4 + - + -
596A LEU* 3.4 5.7 + - + +
597A LEU 3.3 0.4 - - - -
598A GLN* 1.3 77.1 - - - +
600A ASP* 1.3 66.0 + - - +
602A VAL* 3.3 10.9 + - - +
603A LEU* 4.3 1.4 + - - +
735A ARG* 3.3 39.6 + - + +
738A ILE* 4.7 12.9 - - + +
747A ASN* 4.1 5.2 + - - -
748A PRO* 3.7 12.6 - - - +
749A LEU* 3.2 46.8 + - + +
752A TYR* 3.4 50.5 + + + -
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Residues in contact with ASP 600 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218A ARG* 2.8 42.4 + - - +
356A THR* 5.0 10.0 + - - +
358A GLN* 4.4 8.7 - - - +
359A ASN* 4.5 14.8 + - - +
362A ARG* 6.3 0.2 - - - +
596A LEU 2.9 21.5 + - - +
597A LEU* 3.8 6.8 - - - +
599A TYR* 1.3 75.8 - - - +
601A ASP* 1.3 65.4 + - - +
602A VAL 3.1 0.5 + - - -
603A LEU* 3.5 5.9 + - - +
604A ARG* 3.1 21.8 + - - +
735A ARG* 2.9 23.7 + - - +
----------------------------------------------------------
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Residues in contact with ASP 601 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359A ASN* 4.8 0.2 - - - +
362A ARG* 3.2 26.6 + - - -
597A LEU* 2.9 33.9 + - - +
598A GLN* 3.8 10.5 - - - +
599A TYR 3.2 0.4 - - - -
600A ASP* 1.3 78.6 - - - +
602A VAL* 1.3 62.2 + - - +
604A ARG* 3.4 27.8 + - - +
605A GLN* 3.1 36.3 + - - +
----------------------------------------------------------
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Residues in contact with VAL 602 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
598A GLN 3.8 10.5 - - - +
599A TYR 3.6 13.7 - - - +
600A ASP 3.1 1.0 + - - -
601A ASP* 1.3 77.0 - - - +
603A LEU* 1.3 66.7 + - - +
605A GLN* 4.1 7.4 + - - +
606A GLN* 3.2 35.2 + - + +
731A MET* 3.7 23.6 - - + -
752A TYR* 3.7 25.6 - - + +
753A GLN* 4.1 24.7 - - + +
756A GLY* 4.6 8.5 - - - -
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Residues in contact with LEU 603 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354A THR* 4.2 24.5 - - + -
599A TYR 4.3 1.6 + - - +
600A ASP* 3.5 6.6 + - - +
602A VAL* 1.3 81.6 - - - +
604A ARG* 1.3 63.5 + - - +
606A GLN* 3.3 16.0 + - - +
607A ARG* 2.9 30.9 + - - +
724A TRP* 3.7 26.9 - - + -
727A HIS* 4.2 3.4 - - + -
728A ILE* 4.7 13.7 - - + +
731A MET* 4.1 24.7 - - + +
735A ARG* 6.3 1.1 - - - +
752A TYR* 4.9 9.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 604 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359A ASN* 2.9 40.8 - - + +
362A ARG* 3.6 34.4 - - - +
600A ASP 3.1 18.8 + - - +
601A ASP* 3.4 31.6 + - - +
602A VAL 3.1 0.2 - - - -
603A LEU* 1.3 76.9 - - - +
605A GLN* 1.3 84.2 + - - +
607A ARG* 3.2 20.7 + - - +
608A GLU* 3.1 49.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 605 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
601A ASP* 3.1 24.4 + - - +
602A VAL* 4.1 6.3 + - - +
604A ARG* 1.3 101.6 + - - +
606A GLN* 1.3 68.1 + - + +
608A GLU* 3.4 11.2 + - - +
609A VAL* 3.0 31.8 + - + +
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Residues in contact with GLN 606 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
602A VAL* 3.2 26.3 - - - +
603A LEU* 3.3 10.1 + - - +
604A ARG 3.3 0.6 - - - -
605A GLN* 1.3 78.0 - - + +
607A ARG* 1.3 58.5 + - - +
609A VAL* 3.4 4.7 + - - +
610A ILE* 2.9 33.4 + - - +
724A TRP* 4.1 7.6 - - + -
727A HIS* 2.7 26.4 + - - -
731A MET* 3.8 7.9 - - - +
756A GLY 3.0 33.3 + - - -
757A PHE* 4.2 2.8 - - - +
760A PHE* 3.6 34.3 - - + +
----------------------------------------------------------
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Residues in contact with ARG 607 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184A TYR* 5.2 2.2 + - - -
354A THR* 3.2 26.7 + - - +
355A ILE* 3.4 29.0 - - - +
359A ASN* 3.4 34.6 + - - +
363A MET* 6.2 1.0 - - - -
603A LEU* 2.9 29.2 + - - +
604A ARG* 3.2 25.0 + - - +
606A GLN* 1.3 74.8 - - - +
608A GLU* 1.3 64.0 + - - +
610A ILE* 3.8 0.8 - - - +
611A TYR* 2.8 62.3 + - + +
724A TRP* 3.5 27.3 - - + -
----------------------------------------------------------
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Residues in contact with GLU 608 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184A TYR* 5.6 1.8 - - - +
359A ASN 4.9 1.4 - - - +
362A ARG* 5.4 1.7 - - - +
363A MET* 3.6 39.5 - - + +
604A ARG* 3.1 54.5 + - + +
605A GLN* 3.8 10.1 - - - +
607A ARG* 1.3 80.6 - - - +
609A VAL* 1.3 58.2 + - + +
611A TYR* 4.1 5.1 - - - +
612A LYS* 3.0 30.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 609 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
605A GLN* 3.0 23.3 + - + +
606A GLN* 3.6 6.1 - - - +
608A GLU* 1.3 75.6 - - + +
610A ILE* 1.3 67.1 + - + +
612A LYS* 3.1 15.1 + - - +
613A GLN* 3.0 36.0 + - + +
760A PHE* 4.1 20.2 - - + -
----------------------------------------------------------
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Residues in contact with ILE 610 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
606A GLN 2.9 24.3 + - - +
607A ARG* 3.8 4.0 - - - +
609A VAL* 1.3 74.1 - - + +
611A TYR* 1.3 71.5 + - + +
613A GLN* 3.1 9.5 + - + +
614A ARG* 2.8 26.4 + - + +
720A VAL* 4.0 22.6 - - + +
724A TRP* 3.9 23.3 - - + -
760A PHE* 3.8 18.8 - - + -
763A MET* 3.5 31.4 - - + -
764A ILE* 4.5 10.3 - - + -
767A ILE* 4.7 9.9 - - + -
----------------------------------------------------------
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Residues in contact with TYR 611 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184A TYR* 3.6 26.2 - + - +
185A LEU* 3.9 9.6 + - + +
188A ASN* 3.4 57.0 + - + +
189A MET* 5.3 1.1 - - + +
353A ALA* 3.6 26.9 - - - +
354A THR 4.6 0.5 + - - -
607A ARG* 2.8 46.6 + - + +
608A GLU* 4.1 3.6 - - - +
610A ILE* 1.3 80.7 - - + +
612A LYS* 1.3 63.1 + - - +
614A ARG* 3.8 9.7 - - - +
615A PHE* 3.0 25.3 + - - +
724A TRP* 3.9 28.1 + + - -
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Residues in contact with LYS 612 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608A GLU 3.0 20.1 + - - +
609A VAL* 3.1 14.1 + - - +
611A TYR* 1.3 77.8 - - - +
613A GLN* 1.3 92.4 + - - +
615A PHE* 3.5 6.7 + - - +
616A GLU* 3.4 28.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 613 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
609A VAL* 3.0 27.5 + - + +
610A ILE* 3.5 10.5 - - + +
612A LYS* 1.3 110.6 - - - +
614A ARG* 1.3 65.4 + - - +
616A GLU* 3.0 21.7 + - - +
617A VAL* 3.1 17.6 + - + +
720A VAL* 6.4 1.1 - - + -
----------------------------------------------------------
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Residues in contact with ARG 614 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A ASN* 3.3 30.8 + - - +
189A MET 3.1 14.9 + - - -
190A VAL 2.9 34.7 + - - +
191A LEU* 5.0 0.4 - - - +
610A ILE* 2.8 19.7 + - + +
611A TYR* 3.8 14.4 - - - +
613A GLN* 1.3 73.6 - - - +
615A PHE* 1.3 65.0 + - - +
617A VAL* 3.0 12.4 + - - +
618A ILE* 3.0 39.4 + - - +
717A LEU* 3.8 23.3 - - + +
720A VAL* 4.3 19.4 - - + +
721A ASP* 2.5 43.4 + - - -
----------------------------------------------------------
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Residues in contact with PHE 615 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A ASN* 5.6 2.9 - - - +
193A LYS* 3.9 31.2 - - + -
196A MET* 4.3 27.1 - - + -
611A TYR 3.0 17.9 + - - +
612A LYS* 3.7 6.7 - - - +
614A ARG* 1.3 75.9 - - - +
616A GLU* 1.3 69.4 + - - +
618A ILE* 3.1 15.2 + - + +
619A ASP* 2.7 52.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 616 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
612A LYS* 3.4 22.7 + - + +
613A GLN* 3.0 15.9 + - - +
615A PHE* 1.3 96.9 - - - +
617A VAL* 1.3 63.5 + - + +
619A ASP* 3.1 14.1 + - - +
620A SER* 3.1 26.6 + - - -
626A ILE* 6.3 3.6 - - + -
----------------------------------------------------------
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Residues in contact with VAL 617 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
613A GLN* 3.1 15.4 + - + +
614A ARG* 3.0 11.8 + - - +
616A GLU* 1.3 76.9 - - + +
618A ILE* 1.3 61.0 + - - +
620A SER* 3.4 8.0 + - - -
623A LEU* 3.7 33.2 - - + +
626A ILE* 5.7 8.7 - - + +
713A LYS* 2.9 29.5 - - + +
716A VAL* 3.8 30.7 - - + -
717A LEU* 4.0 17.9 - - + -
720A VAL* 5.2 4.3 - - + -
----------------------------------------------------------
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Residues in contact with ILE 618 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187A ASP 5.4 1.6 - - - +
190A VAL* 2.9 40.6 - - + +
191A LEU 4.4 4.3 - - - +
192A TYR* 4.4 2.0 - - - -
193A LYS* 3.6 39.9 - - + +
196A MET* 6.2 0.9 - - - -
614A ARG* 3.0 26.0 + - + +
615A PHE* 3.5 17.7 - - + +
617A VAL* 1.3 76.7 - - - +
619A ASP* 1.3 58.3 + - + +
620A SER 3.2 4.2 + - - +
713A LYS* 3.6 19.3 + - - -
717A LEU* 3.7 25.1 - - + -
----------------------------------------------------------
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Residues in contact with ASP 619 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
193A LYS* 3.0 31.6 - - - +
615A PHE* 2.7 45.5 + - + +
616A GLU* 3.1 17.9 + - - +
618A ILE* 1.3 72.3 - - - +
620A SER* 1.3 55.1 + - - +
621A GLU* 5.8 0.6 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il