Contacts of the helix formed by residues 706 - 737 (chain A) in PDB entry 1TF5


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLU 706 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    705A  LYS*     1.3    98.2    -      -       +      +
    707A  GLN*     1.3    66.0    +      -       -      +
    708A  MET      3.0     2.9    -      -       -      -
    709A  ARG*     3.1    24.7    +      -       +      +
    710A  GLU*     3.4    14.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 707 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    703A  PHE      5.1     0.8    -      -       -      +
    704A  GLY*     3.0    33.5    -      -       -      +
    705A  LYS*     3.2    17.5    -      -       +      +
    706A  GLU*     1.3    81.1    -      -       -      +
    708A  MET*     1.3    52.8    +      -       -      +
    710A  GLU*     3.4     7.4    +      -       -      +
    711A  PHE*     2.7    35.6    +      -       -      +
    780A  ILE*     3.6    28.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET 708 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    624A  ARG*     4.1    10.1    -      -       -      +
    696A  TYR      5.2     0.7    -      -       -      +
    699A  LYS*     4.4    16.2    -      -       +      +
    700A  GLU*     3.8    49.1    -      -       +      +
    703A  PHE      5.3     3.3    +      -       -      +
    704A  GLY      5.0     1.2    -      -       -      -
    705A  LYS      4.1     9.7    +      -       -      +
    706A  GLU      3.0     0.2    -      -       -      -
    707A  GLN*     1.3    79.3    -      -       -      +
    709A  ARG*     1.3    71.9    +      -       -      +
    711A  PHE*     3.1    40.8    +      -       +      +
    712A  GLU*     3.0    60.0    +      -       -      +
    775A  VAL*     4.1    14.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 709 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    621A  GLU      3.3    29.2    -      -       -      +
    622A  ASN*     3.4    36.2    +      -       -      +
    623A  LEU*     3.8     9.6    -      -       -      +
    624A  ARG*     3.6    18.5    -      -       -      +
    696A  TYR*     4.8     1.4    +      -       -      -
    700A  GLU*     2.6    25.2    +      -       -      -
    705A  LYS      5.3     1.9    +      -       -      +
    706A  GLU*     3.1    18.4    +      -       +      +
    708A  MET*     1.3    98.6    -      -       -      +
    710A  GLU*     1.3    62.8    +      -       +      +
    712A  GLU*     3.4    16.6    +      -       -      +
    713A  LYS*     3.2    26.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 710 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    192A  TYR*     4.7    16.9    +      -       -      -
    706A  GLU*     3.4    10.9    +      -       +      +
    707A  GLN*     3.4     8.8    +      -       -      +
    708A  MET      3.2     0.2    -      -       -      -
    709A  ARG*     1.3    80.7    -      -       +      +
    711A  PHE*     1.3    65.5    +      -       -      +
    712A  GLU      3.2     0.9    -      -       -      -
    713A  LYS*     3.8    30.7    +      -       -      +
    714A  VAL*     3.2    32.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 711 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    699A  LYS*     3.4    20.0    -      -       -      -
    707A  GLN      2.7    19.2    +      -       -      +
    708A  MET*     3.1    30.5    +      -       +      +
    710A  GLU*     1.3    79.6    -      -       -      +
    712A  GLU*     1.3    59.2    +      -       -      +
    714A  VAL*     4.2     2.4    -      -       -      +
    715A  ILE*     3.0    41.1    +      -       +      +
    774A  PHE      3.4    14.4    -      -       -      -
    775A  VAL*     3.8    24.7    -      -       +      -
    778A  ALA*     3.1    27.4    -      -       +      -
    779A  GLU      4.4     3.1    -      -       -      -
    780A  ILE*     3.7    38.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 712 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    623A  LEU*     3.4    10.7    +      -       +      +
    624A  ARG*     2.8    58.6    +      -       -      +
    627A  VAL*     3.6    27.4    -      -       +      -
    708A  MET*     3.0    43.3    +      -       +      +
    709A  ARG*     3.4    10.7    +      -       -      +
    711A  PHE*     1.3    76.2    -      -       -      +
    713A  LYS*     1.3    68.2    +      -       -      +
    715A  ILE*     2.8    19.1    +      -       -      -
    716A  VAL*     2.9    19.0    +      -       -      +
    775A  VAL*     4.7     5.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 713 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    191A  LEU*     5.2     7.7    +      -       +      +
    617A  VAL*     2.9    34.8    -      -       +      +
    618A  ILE*     3.6    17.6    +      -       +      -
    620A  SER      3.3    21.4    +      -       -      -
    621A  GLU      5.8     0.9    -      -       -      -
    623A  LEU*     4.0    14.9    -      -       -      +
    709A  ARG      3.2    17.4    +      -       -      +
    710A  GLU*     3.8    31.4    +      -       -      +
    712A  GLU*     1.3    78.7    -      -       -      +
    714A  VAL*     1.3    63.0    +      -       +      +
    716A  VAL*     3.7     1.6    +      -       -      +
    717A  LEU*     3.2    42.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 714 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    191A  LEU*     4.5    24.2    -      -       +      -
    710A  GLU*     3.2    22.9    +      -       +      +
    711A  PHE*     4.2     3.1    -      -       -      +
    712A  GLU      3.1     0.8    -      -       -      -
    713A  LYS*     1.3    78.2    -      -       +      +
    715A  ILE*     1.3    64.2    +      -       +      +
    717A  LEU*     4.0     3.6    -      -       -      +
    718A  ARG*     3.0    41.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 715 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    711A  PHE*     3.0    39.0    -      -       +      +
    712A  GLU*     2.8    10.0    +      -       -      +
    714A  VAL*     1.3    76.7    -      -       +      +
    716A  VAL*     1.3    58.3    +      -       +      +
    718A  ARG*     2.8    51.6    -      -       -      +
    719A  ALA*     3.1    10.8    +      -       +      +
    770A  GLU*     5.5     0.2    -      -       -      +
    771A  VAL*     3.9    16.2    -      -       +      -
    774A  PHE*     3.8    35.7    -      -       +      +
    775A  VAL*     3.8    25.4    -      -       +      -
    778A  ALA*     6.0     0.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 716 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    617A  VAL*     3.8    34.3    -      -       +      -
    623A  LEU*     3.8    16.4    -      -       +      -
    626A  ILE*     5.9     4.7    -      -       +      -
    627A  VAL*     4.3    10.3    -      -       +      -
    630A  MET*     5.1    10.1    -      -       -      -
    712A  GLU*     2.9    20.2    +      -       -      +
    713A  LYS      4.2     0.2    -      -       -      +
    715A  ILE*     1.3    75.7    -      -       -      +
    717A  LEU*     1.3    59.8    +      -       -      +
    719A  ALA*     3.2     1.9    +      -       -      +
    720A  VAL*     2.9    41.9    +      -       +      +
    767A  ILE*     5.5     2.0    -      -       +      -
    771A  VAL*     3.9    30.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 717 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    190A  VAL      4.1     2.2    -      -       -      +
    191A  LEU*     3.4    41.7    -      -       +      +
    614A  ARG*     3.8    29.6    -      -       +      +
    617A  VAL*     4.0    18.2    -      -       +      -
    618A  ILE*     3.7    33.2    -      -       +      -
    713A  LYS*     3.2    24.6    +      -       +      +
    714A  VAL      4.0     3.4    -      -       -      +
    716A  VAL*     1.3    78.6    -      -       -      +
    718A  ARG*     1.3    62.4    +      -       -      +
    720A  VAL*     4.5     3.4    -      -       +      -
    721A  ASP*     3.0    38.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 718 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    714A  VAL*     3.0    22.5    +      -       +      +
    715A  ILE*     2.8    60.2    -      -       +      +
    717A  LEU*     1.3    76.0    -      -       -      +
    719A  ALA*     1.3    57.5    +      -       -      +
    721A  ASP*     4.2     4.4    -      -       -      +
    722A  SER*     2.9    33.3    +      -       -      -
    770A  GLU*     4.3     5.1    +      -       -      +
    774A  PHE*     3.4    33.5    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 719 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    715A  ILE      3.1    14.3    +      -       -      +
    716A  VAL      3.2     4.9    +      -       -      +
    718A  ARG*     1.3    80.2    -      -       -      +
    720A  VAL*     1.3    60.4    +      -       -      +
    722A  SER*     4.4     0.2    -      -       -      -
    723A  LYS*     2.9    37.1    +      -       -      +
    767A  ILE*     3.9    15.3    -      -       +      +
    770A  GLU*     3.5    24.7    -      -       +      +
    771A  VAL*     3.6    21.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 720 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    610A  ILE*     4.0    29.2    -      -       +      +
    613A  GLN*     6.5     0.7    -      -       +      -
    614A  ARG*     4.3    21.8    -      -       +      +
    617A  VAL*     5.2     7.2    -      -       +      -
    716A  VAL*     2.9    34.5    +      -       +      +
    717A  LEU*     3.8     6.1    -      -       +      +
    719A  ALA*     1.3    76.0    -      -       -      +
    721A  ASP*     1.3    66.0    +      -       -      +
    723A  LYS*     3.8     0.7    -      -       -      +
    724A  TRP*     2.7    33.2    +      -       +      +
    763A  MET*     5.4     0.2    -      -       -      +
    767A  ILE*     4.1    25.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 721 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    188A  ASN      4.5     1.2    -      -       -      +
    189A  MET*     4.4     8.2    -      -       -      +
    352A  LEU*     5.2     2.6    -      -       -      +
    614A  ARG*     2.5    51.9    +      -       -      -
    717A  LEU*     3.0    19.1    +      -       -      +
    718A  ARG*     4.2     3.5    -      -       -      +
    720A  VAL*     1.3    76.2    -      -       -      +
    722A  SER*     1.3    61.4    +      -       -      +
    724A  TRP*     3.8     8.9    -      -       -      +
    725A  MET*     3.1    23.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 722 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    718A  ARG      2.9    22.4    +      -       -      -
    719A  ALA*     3.9     4.5    -      -       -      -
    721A  ASP*     1.3    77.0    -      -       -      +
    723A  LYS*     1.3    69.5    +      -       -      +
    725A  MET*     3.3    17.3    +      -       -      +
    726A  ASP*     3.1    30.9    +      -       -      +
    770A  GLU*     4.5     9.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 723 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    719A  ALA      2.9    22.2    +      -       -      +
    720A  VAL      4.0     0.7    -      -       -      +
    722A  SER*     1.3    79.1    +      -       -      +
    724A  TRP*     1.3    60.8    +      -       -      +
    726A  ASP*     3.3    18.7    +      -       +      +
    727A  HIS*     2.9    28.4    +      -       -      +
    763A  MET*     3.8    13.8    -      -       +      +
    766A  SER*     3.9    30.8    -      -       -      -
    767A  ILE*     3.6    33.0    -      -       +      +
    770A  GLU*     3.3    31.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 724 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    352A  LEU      3.8    14.5    +      -       -      -
    353A  ALA*     4.8     0.8    -      -       -      +
    354A  THR*     5.3     1.7    -      -       +      +
    603A  LEU*     3.7    23.3    -      -       +      -
    606A  GLN*     4.1     4.5    -      -       +      -
    607A  ARG*     3.5    45.0    -      -       +      +
    610A  ILE*     3.9    28.5    -      -       +      -
    611A  TYR*     3.9    29.4    +      +       -      -
    720A  VAL*     2.7    23.4    +      -       +      +
    721A  ASP*     3.8     7.6    -      -       -      +
    723A  LYS*     1.3    71.9    -      -       -      +
    725A  MET*     1.3    58.2    +      -       -      +
    727A  HIS*     3.3    24.5    +      +       -      +
    728A  ILE*     3.0    58.7    +      -       +      +
    763A  MET*     3.8    20.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 725 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    350A  MET*     3.5    37.6    -      -       +      +
    351A  THR      3.5    23.5    -      -       -      +
    352A  LEU*     3.6    25.1    -      -       +      -
    721A  ASP      3.1    14.7    +      -       -      +
    722A  SER*     3.4    21.1    -      -       -      +
    723A  LYS      3.2     0.2    -      -       -      -
    724A  TRP*     1.3    79.4    -      -       -      +
    726A  ASP*     1.3    78.5    +      -       -      +
    728A  ILE*     3.4     6.8    +      -       -      +
    729A  ASP*     3.4    19.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 726 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    350A  MET*     5.7     2.8    -      -       -      +
    722A  SER*     3.1    17.8    +      -       -      +
    723A  LYS*     3.7    27.6    +      -       +      +
    725A  MET*     1.3    94.2    -      -       -      +
    727A  HIS*     1.3    58.3    +      -       -      +
    729A  ASP*     3.2     7.5    +      -       -      +
    730A  ALA*     2.9    31.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 727 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    603A  LEU*     4.2     2.9    -      -       +      -
    606A  GLN*     2.7    26.1    +      -       -      -
    723A  LYS      2.9    18.2    +      -       -      +
    724A  TRP*     3.4    32.5    -      +       +      +
    725A  MET      3.2     0.2    -      -       -      -
    726A  ASP*     1.3    77.6    -      -       -      +
    728A  ILE*     1.3    56.3    +      -       -      +
    730A  ALA*     3.9     3.7    -      -       -      +
    731A  MET*     2.8    56.6    +      -       +      +
    759A  MET*     3.6    30.5    +      -       +      +
    760A  PHE*     3.6    24.7    -      -       -      -
    763A  MET*     3.6    21.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 728 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    351A  THR*     4.2    27.1    -      -       +      +
    352A  LEU      4.1    14.6    -      -       -      +
    353A  ALA*     4.3     5.2    -      -       -      -
    354A  THR*     4.0    26.2    -      -       +      -
    603A  LEU*     4.7    10.8    -      -       +      +
    724A  TRP*     3.0    63.3    +      -       +      +
    725A  MET*     3.8     4.5    -      -       -      +
    726A  ASP      3.3     0.4    -      -       -      -
    727A  HIS*     1.3    73.9    -      -       -      +
    729A  ASP*     1.3    59.5    +      -       -      +
    731A  MET*     3.6     5.0    +      -       -      +
    732A  ASP*     3.0    29.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 729 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    229A  LYS*     3.6    21.7    +      -       -      -
    285A  ALA*     5.4     2.8    -      -       -      +
    348A  GLU*     5.5     1.6    -      -       -      +
    350A  MET*     4.0    27.5    -      -       +      +
    725A  MET      3.4     9.0    +      -       -      +
    726A  ASP*     3.2     9.8    +      -       -      +
    728A  ILE*     1.3    81.7    -      -       -      +
    730A  ALA*     1.3    58.0    +      -       -      +
    732A  ASP*     3.2    12.3    +      -       -      +
    733A  GLN*     3.0    44.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 730 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    281A  VAL      5.4     0.9    -      -       -      +
    284A  VAL*     3.6     8.4    -      -       +      +
    285A  ALA*     5.4     4.5    -      -       +      +
    726A  ASP      2.9    17.4    +      -       -      +
    727A  HIS*     3.9     1.3    -      -       -      +
    729A  ASP*     1.3    78.1    -      -       -      +
    731A  MET*     1.3    52.2    +      -       -      +
    733A  GLN*     3.1    15.9    +      -       -      +
    734A  LEU*     2.8    34.3    +      -       -      +
    759A  MET*     3.4    27.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 731 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    602A  VAL*     3.7    26.2    -      -       +      -
    603A  LEU*     4.1    18.6    -      -       +      +
    606A  GLN*     3.8    10.5    -      -       -      +
    727A  HIS*     2.8    52.9    +      -       +      +
    728A  ILE      3.9     3.6    -      -       -      +
    730A  ALA*     1.3    73.7    -      -       -      +
    732A  ASP*     1.3    62.1    +      -       -      +
    734A  LEU*     3.7     7.9    -      -       -      +
    735A  ARG*     3.0    24.9    +      -       -      +
    752A  TYR*     3.7    28.4    +      -       +      +
    756A  GLY*     3.8    22.0    -      -       -      -
    759A  MET*     3.6    16.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 732 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    331A  GLU*     4.6     3.1    -      -       -      +
    728A  ILE*     3.0    20.7    +      -       +      +
    729A  ASP*     3.4    12.3    -      -       -      +
    730A  ALA      3.1     0.2    -      -       -      -
    731A  MET*     1.3    77.6    -      -       -      +
    733A  GLN*     1.3    64.4    +      -       -      +
    735A  ARG*     3.3     7.7    +      -       -      +
    736A  GLN*     2.7    54.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 733 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    229A  LYS*     4.6     4.2    -      -       -      +
    284A  VAL*     3.7     9.9    -      -       +      -
    285A  ALA*     3.4    27.8    +      -       -      +
    288A  HIS*     3.2    51.8    +      -       +      +
    289A  HIS*     4.3    11.9    -      -       -      -
    729A  ASP*     3.0    37.4    +      -       -      +
    730A  ALA*     3.6    13.2    -      -       -      +
    732A  ASP*     1.3    74.3    -      -       +      +
    734A  LEU*     1.3    65.2    +      -       -      +
    736A  GLN*     3.4    13.5    +      -       -      +
    737A  GLY*     3.0    21.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 734 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    281A  VAL*     5.4     0.2    -      -       +      -
    284A  VAL*     3.8    10.5    -      -       +      +
    730A  ALA      2.8    20.5    +      -       -      +
    731A  MET*     3.7    15.9    -      -       -      +
    733A  GLN*     1.3    71.7    -      -       -      +
    735A  ARG*     1.3    58.4    +      -       -      +
    737A  GLY      3.3     1.6    +      -       -      -
    738A  ILE*     2.8    35.5    +      -       +      +
    741A  ARG*     3.6    25.6    -      -       -      +
    752A  TYR*     4.1    17.3    -      -       +      -
    755A  GLU*     3.4    47.6    -      -       +      +
    756A  GLY*     3.9    18.2    -      -       -      +
    759A  MET*     4.2    12.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 735 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    218A  ARG*     3.5    16.4    -      -       -      +
    596A  LEU*     4.0    17.6    +      -       -      +
    599A  TYR*     3.3    40.6    +      -       +      +
    600A  ASP*     2.9    36.4    +      -       -      +
    603A  LEU*     6.3     1.2    -      -       -      +
    731A  MET      3.0    19.1    +      -       -      +
    732A  ASP*     3.6     8.5    -      -       -      +
    734A  LEU*     1.3    75.5    -      -       -      +
    736A  GLN*     1.3    65.6    +      -       +      +
    737A  GLY      3.3     0.3    +      -       -      -
    738A  ILE*     3.4    20.0    +      -       -      +
    752A  TYR*     3.5    31.5    +      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 736 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    288A  HIS*     4.2    14.4    +      -       +      -
    331A  GLU*     3.2    46.1    +      -       -      +
    732A  ASP*     2.7    57.2    +      -       -      +
    733A  GLN*     3.7     9.3    -      -       -      +
    735A  ARG*     1.3    78.1    -      -       +      +
    737A  GLY*     1.3    58.8    +      -       -      +
    738A  ILE*     3.7     0.9    +      -       -      +
    739A  HIS*     3.8    14.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 737 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    733A  GLN      3.0    14.1    +      -       -      -
    734A  LEU      3.4     3.6    -      -       -      -
    736A  GLN*     1.3    77.6    -      -       -      +
    738A  ILE*     1.3    63.1    +      -       -      +
    739A  HIS*     3.1    12.6    -      -       -      -
    740A  LEU*     3.0    28.7    +      -       -      +
    741A  ARG*     3.8    11.9    +      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il