Contacts of the helix formed by residues 114 - 143 (chain C) in PDB entry 1TKP
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 114 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113C TYR* 1.3 79.5 - - - +
115C ILE* 1.3 65.6 + - + +
116C ARG* 3.2 25.1 + - - +
117C THR* 2.9 26.3 + - - -
118C SER* 3.0 17.3 + - - -
7D ALA* 5.6 0.4 - - - +
8D ARG* 3.8 27.9 - - + +
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Residues in contact with ILE 115 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C HIS* 5.1 2.2 - - + -
55C VAL* 3.6 33.7 - - + -
56C GLU 4.9 10.8 - - - +
59C GLU* 5.2 8.5 - - - +
63C LEU* 3.7 24.7 - - + -
67C LEU* 4.4 5.6 - - + -
113C TYR 4.5 0.4 - - - -
114C ASP* 1.3 76.0 - - + +
116C ARG* 1.3 67.1 + - + +
118C SER* 4.4 9.2 - - - -
119C LEU* 2.9 56.6 + - + +
8D ARG* 5.1 1.2 - - - +
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Residues in contact with ARG 116 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114C ASP* 3.2 10.7 + - - +
115C ILE* 1.3 86.2 - - + +
117C THR* 1.3 58.8 + - - +
119C LEU* 5.4 0.2 - - - -
120C ALA* 2.9 29.1 + - - +
169C TYR 4.3 4.8 + - - -
170C LEU* 2.8 69.9 + - + +
171C GLU 4.8 3.0 + - - -
172C ASP* 6.1 0.2 - - - +
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Residues in contact with THR 117 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113C TYR* 3.7 22.8 - - + -
114C ASP* 2.9 27.4 + - - -
115C ILE 3.3 0.2 - - - -
116C ARG* 1.3 77.4 - - - +
118C SER* 1.3 68.9 + - - +
120C ALA* 3.2 7.0 + - - +
121C ASN* 3.0 40.3 + - - +
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Residues in contact with SER 118 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C HIS* 3.3 47.4 + - - -
108C GLU* 3.4 11.6 + - - -
112C VAL* 5.7 0.2 - - - +
113C TYR* 3.1 23.4 + - - +
114C ASP 3.0 15.9 + - - -
115C ILE* 3.8 10.5 - - - -
117C THR* 1.3 80.4 - - - +
119C LEU* 1.3 62.5 + - - +
121C ASN* 3.2 1.2 + - - +
122C ASP* 3.0 17.5 + - - +
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Residues in contact with LEU 119 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C HIS* 5.0 0.9 - - - +
63C LEU* 4.0 17.5 - - + -
66C PHE* 5.7 0.2 - - + -
67C LEU* 3.8 30.5 - - + -
115C ILE* 2.9 44.9 + - + +
116C ARG 4.0 2.7 - - - +
118C SER* 1.3 73.5 - - - +
120C ALA* 1.3 58.3 + - - +
122C ASP* 3.3 11.4 + - - +
123C MET* 2.8 29.5 + - - +
166C ILE* 3.5 22.4 - - + +
169C TYR* 3.7 31.4 - - + -
170C LEU* 4.1 15.0 - - + -
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Residues in contact with ALA 120 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116C ARG 2.9 20.5 + - - +
117C THR* 3.2 7.2 + - + +
119C LEU* 1.3 77.4 - - - +
121C ASN* 1.3 57.6 - - - +
123C MET* 3.1 12.4 + - + +
124C ALA* 3.0 26.2 + - - +
170C LEU* 3.9 14.7 - - + +
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Residues in contact with ASN 121 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47C GLN* 3.8 17.0 - - - +
106C ASP 6.1 0.2 - - - +
108C GLU* 2.8 34.2 + - + +
113C TYR* 4.9 1.8 - - - -
117C THR* 3.0 33.3 + - - +
118C SER 3.4 6.3 - - - +
120C ALA* 1.3 73.7 - - - +
122C ASP* 1.3 65.8 + - - +
124C ALA* 3.1 10.6 + - - +
125C ILE* 3.0 24.3 + - + +
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Residues in contact with ASP 122 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44C LEU* 4.9 2.0 - - + +
47C GLN* 3.2 18.1 + - - +
48C LEU* 3.9 22.2 - - + +
51C HIS* 2.5 39.1 + - - +
118C SER 3.0 7.8 + - - +
119C LEU* 3.6 18.0 - - - +
121C ASN* 1.3 72.9 - - - +
123C MET* 1.3 64.6 + - - +
125C ILE* 3.1 9.3 + - - +
126C TYR* 2.9 28.9 + - + -
166C ILE* 3.8 15.9 - - + -
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Residues in contact with MET 123 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119C LEU 2.8 14.9 + - - +
120C ALA* 3.2 17.0 - - + +
121C ASN 3.1 0.2 - - - -
122C ASP* 1.3 78.9 - - - +
124C ALA* 1.3 61.0 + - - +
126C TYR* 3.2 9.5 + - - +
127C GLY* 3.0 21.3 + - - -
163C ALA* 4.7 11.7 - - + +
166C ILE* 3.9 11.0 - - + +
167C GLU* 3.9 40.4 - - - +
170C LEU* 4.0 16.2 - - + -
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Residues in contact with ALA 124 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106C ASP* 5.9 5.4 - - + +
120C ALA 3.0 10.9 + - - +
121C ASN* 3.1 12.1 + - - +
123C MET* 1.3 73.3 - - - +
125C ILE* 1.3 68.6 + - + +
127C GLY* 3.3 1.7 + - - -
128C ASP* 3.2 30.0 + - - +
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Residues in contact with ILE 125 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43C VAL* 4.9 3.4 - - + -
44C LEU* 3.6 35.2 - - + -
47C GLN* 3.2 41.7 - - + +
105C VAL* 4.0 28.7 - - + -
106C ASP* 3.5 25.4 - - + +
107C VAL* 5.1 0.9 - - + -
121C ASN* 3.0 10.3 + - + +
122C ASP* 3.5 9.6 - - - +
124C ALA* 1.3 77.5 - - + +
126C TYR* 1.4 63.8 + - - +
128C ASP* 3.3 3.0 + - - +
129C ILE* 3.1 29.0 + - + +
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Residues in contact with TYR 126 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44C LEU* 3.7 32.8 - - + -
48C LEU* 3.2 26.3 - - + +
70C ALA* 3.5 11.1 + - - +
74C ALA* 5.4 0.6 - - + +
122C ASP* 2.9 29.3 + - + -
123C MET* 3.2 6.7 + - - +
125C ILE* 1.4 71.8 - - - +
127C GLY* 1.3 52.5 + - - +
129C ILE* 3.1 8.3 + - + +
130C ILE* 2.7 40.4 + - + +
159C LEU* 3.6 36.1 - - + -
162C ASP* 3.5 31.3 + - + +
163C ALA* 3.7 19.5 - - + -
166C ILE* 3.6 28.7 - - + +
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Residues in contact with GLY 127 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123C MET 3.0 14.5 + - - -
124C ALA* 3.9 3.1 - - - -
125C ILE 3.3 0.2 - - - -
126C TYR* 1.3 74.8 - - - +
128C ASP* 1.3 66.5 + - - +
130C ILE* 3.1 10.9 + - - +
131C GLU* 2.9 32.7 + - - +
163C ALA* 6.0 0.2 - - - -
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Residues in contact with ASP 128 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40C ASN* 5.6 2.7 - - - +
104C SER* 4.9 5.1 + - - +
105C VAL* 3.9 26.4 - - + +
106C ASP* 5.3 3.8 + - - +
124C ALA* 3.2 15.4 + - - +
125C ILE 3.6 7.2 - - - +
127C GLY* 1.3 81.0 - - - +
129C ILE* 1.4 60.2 + - - +
131C GLU* 3.4 10.7 + - - +
132C ALA* 3.1 21.7 + - - +
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Residues in contact with ILE 129 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C ASP* 5.3 4.7 - - - +
40C ASN* 3.8 37.2 - - + +
41C VAL* 4.0 19.3 - - + -
44C LEU* 3.4 32.3 - - + -
105C VAL* 4.6 2.0 - - + -
125C ILE* 3.1 24.4 + - + +
126C TYR* 3.1 8.2 + - - +
128C ASP* 1.4 73.2 - - - +
130C ILE* 1.3 59.6 + - - +
132C ALA* 3.4 6.1 + - - +
133C THR* 2.8 44.0 + - - +
159C LEU* 4.1 19.7 - - + -
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Residues in contact with ILE 130 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126C TYR* 2.7 28.9 + - + +
127C GLY* 3.5 7.9 - - - +
129C ILE* 1.3 73.2 - - + +
131C GLU* 1.3 60.2 + - + +
133C THR* 3.1 2.4 + - - -
134C ARG* 2.9 69.0 + - - +
156C LEU* 3.9 11.5 - - + +
159C LEU* 4.3 10.8 - - + +
160C GLU* 3.9 30.3 - - + +
163C ALA* 3.5 31.9 - - + -
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Residues in contact with GLU 131 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127C GLY 2.9 20.0 + - - +
128C ASP* 3.9 11.3 - - - +
130C ILE* 1.3 74.9 - - + +
132C ALA* 1.3 65.8 + - - +
134C ARG* 3.3 25.3 + - - +
135C GLU* 3.1 30.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 132 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C ASP* 4.0 14.8 - - - +
40C ASN* 5.6 5.8 - - - +
128C ASP 3.1 14.9 + - - +
129C ILE* 3.6 7.4 - - - +
131C GLU* 1.3 78.0 - - - +
133C THR* 1.3 65.2 + - - +
135C GLU* 3.0 11.4 + - - -
136C HIS* 2.9 38.2 + - + +
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Residues in contact with THR 133 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C ASP* 3.9 14.0 + - - -
129C ILE* 2.8 34.7 + - - +
130C ILE 3.1 4.2 + - - -
132C ALA* 1.3 75.5 - - - +
134C ARG* 1.3 65.1 + - - +
136C HIS* 3.1 7.1 + - - +
137C THR* 2.8 35.2 + - + +
152C LEU* 3.7 35.0 - - + +
156C LEU* 3.8 24.0 - - + +
159C LEU* 4.7 5.0 - - + +
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Residues in contact with ARG 134 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130C ILE* 2.9 37.5 + - - +
131C GLU* 3.5 22.5 + - - +
132C ALA 3.2 0.2 - - - -
133C THR* 1.3 80.1 - - - +
135C GLU* 1.4 62.9 + - + +
137C THR* 3.2 10.8 + - - -
138C GLU* 3.2 28.2 + - - +
156C LEU* 4.3 15.0 - - + +
160C GLU* 3.1 31.5 + - - -
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Residues in contact with GLU 135 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131C GLU* 3.1 19.9 + - - +
132C ALA* 3.0 11.1 + - - +
134C ARG* 1.4 75.2 - - - +
136C HIS* 1.3 62.5 + - + +
138C GLU* 2.9 17.4 + - - +
139C LEU* 2.8 33.4 + - - +
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Residues in contact with HIS 136 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33C ALA* 3.3 46.0 + - + +
34C LEU* 5.6 0.2 - - + -
36C ALA* 5.1 5.2 - - + -
37C ASP* 2.9 35.1 + - - +
132C ALA* 2.9 23.3 + - + +
133C THR* 3.6 4.0 - - - +
135C GLU* 1.3 83.8 + - + +
137C THR* 1.3 60.8 + - - +
139C LEU* 3.1 10.6 + - + +
140C ALA* 2.8 34.1 + - - +
152C LEU* 3.5 17.7 - - + +
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Residues in contact with THR 137 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133C THR* 2.8 38.3 + - + +
134C ARG* 3.3 9.0 + - - +
135C GLU 3.1 0.2 - - - -
136C HIS* 1.3 76.9 - - - +
138C GLU* 1.3 63.8 + - - +
141C GLU* 3.0 29.7 + - - +
149C ALA* 3.8 14.9 - - - +
152C LEU* 3.5 30.5 - - + -
153C ARG* 4.3 23.1 + - + +
156C LEU* 5.0 5.3 - - + +
----------------------------------------------------------
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Residues in contact with GLU 138 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134C ARG* 3.2 20.7 + - - +
135C GLU* 2.9 16.2 + - - +
137C THR* 1.3 82.7 + - - +
139C LEU* 1.3 58.0 + - - +
141C GLU* 3.8 3.4 - - - +
142C ASN* 2.9 43.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 139 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29C GLN* 3.7 37.2 - - + +
30C CYS* 4.6 3.1 - - - -
33C ALA* 4.1 18.4 - - + -
135C GLU 2.8 12.0 + - - +
136C HIS* 3.3 13.7 - - + +
138C GLU* 1.3 79.1 - - - +
140C ALA* 1.3 57.3 + - + +
142C ASN* 3.3 8.1 + - + +
143C LEU* 2.9 50.9 + - + +
----------------------------------------------------------
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Residues in contact with ALA 140 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C CYS* 4.5 8.5 - - - -
136C HIS 2.8 19.9 + - - +
139C LEU* 1.3 69.1 - - + +
141C GLU* 1.3 61.7 + - - +
143C LEU* 3.1 11.3 + - - +
144C GLY 3.0 3.8 + - - -
145C ASP 2.8 45.2 + - - +
148C THR* 3.9 17.3 - - + -
149C ALA* 3.6 18.8 - - + +
152C LEU* 4.5 1.8 - - + -
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Residues in contact with GLU 141 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141A GLU* 4.9 4.9 - - - +
153A ARG* 3.2 36.8 + - - -
137C THR 3.0 14.9 + - - +
138C GLU* 4.0 4.5 - - - +
140C ALA* 1.3 73.8 - - - +
142C ASN* 1.3 59.2 + - - +
144C GLY* 2.6 26.0 + - - +
145C ASP 4.6 0.4 - - - +
146C HIS* 3.2 38.0 + - - +
149C ALA* 3.3 17.0 - - + +
153C ARG* 2.9 33.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN 142 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138C GLU* 2.9 33.0 + - - +
139C LEU* 3.5 8.6 - - + +
141C GLU* 1.3 76.9 - - - +
143C LEU* 1.3 66.4 + - + +
144C GLY* 3.3 1.2 + - - -
----------------------------------------------------------
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Residues in contact with LEU 143 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C ARG* 3.2 46.4 + - + +
29C GLN* 3.5 52.3 - - + +
30C CYS* 4.0 18.8 - - - -
139C LEU* 2.9 33.6 + - + +
140C ALA* 3.1 5.6 + - - +
142C ASN* 1.3 79.2 - - + +
144C GLY* 1.3 61.3 + - - +
145C ASP* 3.2 6.6 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il