Contacts of the helix formed by residues 110 - 139 (chain J) in PDB entry 1UMN


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with THR 110 (chain J).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51J  ARG      4.3     2.9    -      -       -      -
    108J  ASN      3.6     5.1    +      -       -      +
    109J  VAL*     1.3    79.8    -      -       -      +
    111J  ILE*     1.3    66.6    +      -       -      +
    112J  GLU*     3.4    16.4    +      -       -      +
    113J  GLU*     3.1    25.6    +      -       -      +
    114J  GLN*     2.9    22.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 111 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53F  ARG*     3.6    27.4    -      -       -      +
     50J  MET*     3.3    40.2    -      -       +      -
     51J  ARG      3.3    18.7    +      -       -      +
     52J  GLY*     3.6    11.6    -      -       -      +
     53J  ARG      3.5    13.7    -      -       -      +
     54J  GLY      4.1     2.5    -      -       -      +
     55J  PHE      3.9    17.5    -      -       -      +
     58J  TRP*     4.8     3.4    -      -       +      -
    110J  THR*     1.3    73.1    -      -       -      +
    112J  GLU*     1.3    66.9    +      -       -      +
    114J  GLN*     3.0     9.3    +      -       -      +
    115J  LEU*     2.9    41.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 112 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53F  ARG*     3.5    35.3    +      -       +      +
    110J  THR*     3.4    21.2    -      -       -      +
    111J  ILE*     1.3    79.6    +      -       -      +
    113J  GLU*     1.3    56.5    +      -       -      +
    115J  LEU*     3.5     2.5    +      -       -      +
    116J  ALA*     3.0    26.9    +      -       -      +
    166J  LEU*     4.0    24.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 113 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    109J  VAL*     3.6    28.9    -      -       +      +
    110J  THR*     3.1    22.8    +      -       -      +
    112J  GLU*     1.3    74.5    -      -       -      +
    114J  GLN*     1.3    66.7    +      -       -      +
    116J  ALA*     3.2     9.0    +      -       +      +
    117J  ARG*     3.0    22.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 114 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45J  GLN*     5.5     1.0    -      -       -      +
     46J  VAL*     3.7    37.9    -      -       +      +
     49J  TYR*     4.2    24.5    +      -       -      +
     50J  MET*     4.3    16.0    -      -       +      +
     51J  ARG      5.7     0.2    -      -       -      +
    106J  ASP      4.1    10.3    +      -       -      +
    109J  VAL*     3.6    29.0    +      -       +      +
    110J  THR      2.9    20.3    +      -       -      +
    111J  ILE*     3.0    10.3    +      -       -      +
    113J  GLU*     1.3    76.9    -      -       -      +
    115J  LEU*     1.3    63.3    +      -       -      +
    117J  ARG*     3.0    12.9    +      -       -      +
    118J  VAL*     3.0    25.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 115 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53F  ARG*     5.4     0.9    -      -       -      +
     50J  MET*     4.7     7.0    -      -       +      -
     58J  TRP*     3.6    64.4    -      -       +      +
     62J  MET*     4.1    13.7    -      -       +      -
    111J  ILE*     2.9    29.4    +      -       +      +
    112J  GLU      4.0     4.3    -      -       -      +
    114J  GLN*     1.3    78.0    -      -       -      +
    116J  ALA*     1.3    57.8    +      -       -      +
    118J  VAL*     3.2     5.9    +      -       +      +
    119J  VAL*     2.9    31.7    +      -       -      +
    162J  LEU*     4.1    13.3    -      -       +      +
    165J  GLU*     4.1    13.2    -      -       +      -
    166J  LEU*     4.1    19.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 116 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    112J  GLU      3.0    18.1    +      -       -      +
    113J  GLU*     3.5    11.2    -      -       +      +
    114J  GLN      3.2     0.2    -      -       -      -
    115J  LEU*     1.3    76.9    -      -       -      +
    117J  ARG*     1.3    62.7    +      -       -      +
    119J  VAL*     3.4     6.4    +      -       -      +
    120J  GLU*     3.1    30.6    +      -       -      +
    166J  LEU*     4.0    15.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 117 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42J  ILE*     3.7    46.6    -      -       +      +
     45J  GLN*     4.6     8.7    +      -       -      -
     46J  VAL*     4.4    11.4    -      -       +      -
    100J  LEU*     5.7     1.8    -      -       -      +
    101J  LYS      3.1    28.1    +      -       -      +
    102J  GLU*     3.9     8.9    -      -       -      +
    103J  VAL*     4.1    20.4    -      -       -      +
    113J  GLU      3.0    13.4    +      -       -      +
    114J  GLN*     3.0    16.4    +      -       -      +
    116J  ALA*     1.3    74.0    -      -       -      +
    118J  VAL*     1.3    66.2    +      -       -      +
    120J  GLU*     3.1    25.3    +      -       -      +
    121J  VAL*     3.1    27.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 118 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42J  ILE*     6.1     1.1    -      -       +      -
     43J  LEU*     4.1    13.0    -      -       +      -
     46J  VAL*     4.2    13.0    -      -       +      -
     62J  MET*     3.8    28.9    -      -       +      -
     65J  TYR*     4.3     6.7    -      -       +      -
    114J  GLN      3.0    17.8    +      -       -      +
    115J  LEU*     3.2    11.4    +      -       -      +
    117J  ARG*     1.3    77.9    -      -       -      +
    119J  VAL*     1.3    64.4    +      -       -      +
    121J  VAL*     3.2     9.3    +      -       -      +
    122J  PHE*     2.9    44.1    +      -       +      -
    162J  LEU*     3.7    23.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 119 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    115J  LEU      2.9    21.8    +      -       -      +
    116J  ALA*     3.6     8.7    -      -       -      +
    117J  ARG      3.2     0.2    -      -       -      -
    118J  VAL*     1.3    76.4    -      -       -      +
    120J  GLU*     1.3    52.5    +      -       +      +
    122J  PHE*     3.1     7.4    +      -       -      +
    123J  ARG*     2.7    63.5    +      -       +      +
    159J  ILE*     4.4     9.2    -      -       +      +
    162J  LEU*     3.6    30.3    -      -       +      -
    163J  GLN*     3.6    28.9    -      -       +      +
    166J  LEU*     4.4     3.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 120 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100J  LEU*     5.8     0.2    -      -       -      -
    116J  ALA*     3.1    19.8    +      -       +      +
    117J  ARG*     3.1    24.7    +      -       -      +
    119J  VAL*     1.3    76.6    -      -       +      +
    121J  VAL*     1.3    66.2    +      -       +      +
    123J  ARG*     3.2     9.6    +      -       -      +
    124J  TYR*     3.0    22.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 121 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39J  ALA*     3.7    33.9    -      -       +      +
     42J  ILE*     4.0    35.9    -      -       +      -
     43J  LEU*     5.6     4.0    -      -       +      -
    100J  LEU*     4.3    18.8    -      -       +      -
    117J  ARG*     3.1    22.1    +      -       -      +
    118J  VAL*     3.2     9.2    +      -       -      +
    120J  GLU*     1.3    77.6    -      -       +      +
    122J  PHE*     1.3    70.5    +      -       +      +
    124J  TYR*     3.3     3.3    +      -       -      +
    125J  LEU*     3.0    28.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 122 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43J  LEU*     4.2    19.1    -      -       +      -
     65J  TYR*     3.8    31.9    -      +       +      -
     69J  ILE*     4.8     3.6    -      -       +      -
    118J  VAL*     2.9    33.4    +      -       +      +
    119J  VAL*     3.6     7.4    -      -       -      +
    121J  VAL*     1.3    83.8    -      -       +      +
    123J  ARG*     1.3    66.6    +      -       -      +
    125J  LEU*     3.3    12.6    +      -       +      +
    126J  ALA*     2.9    21.1    +      -       -      +
    155J  ILE*     3.4    34.4    -      -       +      +
    158J  HIS*     3.9    27.1    -      +       +      -
    159J  ILE*     3.8    12.3    -      -       +      -
    162J  LEU*     3.8    24.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 123 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    119J  VAL*     2.7    34.8    +      -       +      +
    120J  GLU*     3.7     8.1    -      -       -      +
    122J  PHE*     1.3    73.0    -      -       -      +
    124J  TYR*     1.3    64.9    +      -       -      +
    126J  ALA*     3.3     3.9    +      -       -      +
    127J  ALA*     3.0    22.9    +      -       -      +
    159J  ILE*     3.8    22.1    -      -       +      +
    163J  GLN*     3.2    30.9    +      -       -      +
    170J  PRO      2.9    23.4    +      -       -      -
    171J  LYS*     2.8    34.9    +      -       -      +
    172J  LEU*     3.9     8.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 124 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31J  GLN*     3.9     2.1    +      -       -      +
     35J  ASP*     2.8    46.0    +      -       +      -
     99J  GLN*     3.6    42.1    +      -       +      +
    100J  LEU*     3.6    32.8    -      -       +      -
    120J  GLU      3.0    12.7    +      -       -      +
    121J  VAL      3.4     7.4    -      -       -      +
    123J  ARG*     1.3    77.1    -      -       -      +
    125J  LEU*     1.3    65.7    -      -       +      +
    127J  ALA*     3.0    10.5    +      -       +      +
    128J  LEU*     2.8    40.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 125 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35J  ASP*     4.2    25.8    -      -       +      +
     36J  LEU*     4.2    16.8    -      -       +      -
     39J  ALA*     3.9    14.6    -      -       +      -
     69J  ILE*     3.7    30.1    -      -       +      -
    100J  LEU*     4.8     0.7    -      -       +      -
    121J  VAL*     3.0    26.3    +      -       +      +
    122J  PHE*     3.3    13.4    +      -       +      +
    124J  TYR*     1.3    88.2    -      -       +      +
    126J  ALA*     1.3    52.2    +      -       -      +
    128J  LEU*     3.1    11.7    +      -       +      +
    129J  PHE*     2.7    51.9    +      -       +      -
    155J  ILE*     4.5     7.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 126 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    122J  PHE      2.9    17.0    +      -       -      +
    123J  ARG*     3.6     5.2    -      -       -      +
    125J  LEU*     1.3    75.8    -      -       -      +
    127J  ALA*     1.3    57.7    +      -       -      +
    129J  PHE*     4.4     8.3    -      -       -      -
    130J  GLN*     3.1    22.0    +      -       -      +
    152J  LYS*     3.6    16.9    -      -       +      +
    155J  ILE*     4.1     9.8    -      -       +      +
    156J  GLU*     4.1    29.8    -      -       +      +
    159J  ILE*     4.4     5.6    -      -       +      -
    172J  LEU*     6.0     0.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 127 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    123J  ARG      3.0    12.2    +      -       -      +
    124J  TYR*     3.0    15.5    +      -       +      +
    126J  ALA*     1.3    73.0    -      -       -      +
    128J  LEU*     1.3    65.4    +      -       -      +
    130J  GLN*     3.1     8.4    +      -       -      +
    131J  LYS*     3.0    20.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 128 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     28J  VAL*     4.2    16.8    -      -       +      +
     31J  GLN*     3.7    26.7    -      -       +      -
     32J  ALA*     3.7    28.0    -      -       +      +
     35J  ASP*     3.7    24.2    -      -       +      +
    124J  TYR*     2.8    23.5    +      -       +      +
    125J  LEU*     3.4    13.5    -      -       +      +
    127J  ALA*     1.3    77.8    -      -       -      +
    129J  PHE*     1.3    71.0    +      -       +      +
    131J  LYS*     3.1     9.6    +      -       +      +
    132J  GLY*     2.8    24.4    +      -       -      -
    148J  PHE*     4.6     1.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 129 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32J  ALA*     4.7     0.4    -      -       +      -
     36J  LEU*     4.0    25.6    -      -       +      -
     72J  TYR*     4.2     8.1    -      +       -      -
     76J  MET*     3.8    19.5    -      -       +      -
    125J  LEU*     2.7    34.2    +      -       +      +
    126J  ALA*     3.8     5.4    -      -       -      +
    127J  ALA      3.2     0.2    -      -       -      -
    128J  LEU*     1.3    87.8    -      -       +      +
    130J  GLN*     1.3    61.3    +      -       -      +
    132J  GLY      3.2     0.3    +      -       -      -
    133J  PHE*     2.9    25.8    +      -       -      +
    148J  PHE*     3.5    34.0    -      +       +      +
    151J  ALA*     3.6    27.4    -      -       +      -
    152J  LYS*     3.6    26.4    -      -       +      +
    155J  ILE*     3.8    23.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 130 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    140H  GLY      5.2     7.9    +      -       -      +
    142H  SER*     4.8     4.7    +      -       -      -
    126J  ALA      3.1    14.5    +      -       -      +
    127J  ALA*     3.1    11.6    +      -       -      +
    129J  PHE*     1.3    73.5    -      -       -      +
    131J  LYS*     1.3    66.7    +      -       -      +
    133J  PHE*     3.3    14.1    +      -       -      +
    134J  ASP*     2.9    53.4    +      -       -      +
    152J  LYS*     3.2    36.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 131 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     28J  VAL*     4.4     7.9    -      -       +      -
    127J  ALA      3.0    12.8    +      -       -      +
    128J  LEU*     3.3    13.9    -      -       +      +
    130J  GLN*     1.3    77.8    -      -       -      +
    132J  GLY*     1.3    64.2    +      -       -      +
    134J  ASP*     3.2     8.6    +      -       -      +
    135J  VAL*     2.9    34.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 132 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     28J  VAL*     3.6    17.3    -      -       -      +
    128J  LEU      2.8    12.7    +      -       -      -
    129J  PHE      3.2     2.8    +      -       -      -
    131J  LYS*     1.3    77.5    -      -       -      +
    133J  PHE*     1.3    57.3    +      -       -      +
    135J  VAL*     4.1     0.9    -      -       -      +
    136J  SER*     2.8    30.8    +      -       -      -
    148J  PHE*     3.4    30.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 133 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    140H  GLY      5.7     2.0    -      -       -      -
    142H  SER*     3.3    35.2    -      -       -      -
    129J  PHE      2.9    13.4    +      -       -      +
    130J  GLN*     3.4    19.3    -      -       -      +
    131J  LYS      3.1     0.2    -      -       -      -
    132J  GLY*     1.3    75.7    -      -       -      +
    134J  ASP*     1.3    71.5    +      -       -      +
    136J  SER*     3.0     5.2    +      -       -      -
    137J  ASP*     2.8    40.5    +      -       +      +
    145J  ASN*     2.9    50.6    +      -       -      +
    148J  PHE*     3.8     7.5    -      -       +      +
    149J  ASN*     3.7    24.7    -      -       +      +
    152J  LYS*     5.9     1.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 134 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    130J  GLN*     2.9    45.7    +      -       -      +
    131J  LYS*     3.7     7.3    -      -       -      +
    133J  PHE*     1.3    84.7    -      -       -      +
    135J  VAL*     1.3    59.5    +      -       +      +
    137J  ASP*     3.3     4.6    +      -       -      +
    138J  GLU*     2.9    29.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 135 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24J  ASP*     3.3    50.7    -      -       +      +
     25J  SER*     3.7     4.0    -      -       -      +
     28J  VAL*     4.6    10.3    -      -       +      -
    131J  LYS*     2.9    24.7    +      -       +      +
    132J  GLY      4.1     2.5    -      -       -      +
    134J  ASP*     1.3    78.4    -      -       +      +
    136J  SER*     1.3    64.1    +      -       -      +
    138J  GLU*     3.1     9.9    +      -       -      +
    139J  GLU*     3.1    22.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 136 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25J  SER*     3.3    20.9    -      -       -      -
    132J  GLY      2.8    22.7    +      -       -      -
    133J  PHE      3.0     8.1    +      -       -      -
    135J  VAL*     1.3    77.9    -      -       -      +
    137J  ASP*     1.3    60.8    +      -       -      +
    139J  GLU      3.3     1.0    +      -       -      -
    140J  GLY      3.1     3.1    +      -       -      -
    141J  ASP*     2.9    42.2    +      -       -      +
    144J  THR*     3.7    19.0    -      -       -      -
    145J  ASN*     3.1    19.5    -      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 137 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    133J  PHE*     2.8    32.2    +      -       +      +
    134J  ASP*     3.6     6.7    -      -       -      +
    136J  SER*     1.3    77.5    +      -       -      +
    138J  GLU*     1.3    64.6    +      -       -      +
    140J  GLY*     3.1    13.9    +      -       -      -
    141J  ASP      5.7     0.2    -      -       -      -
    145J  ASN*     3.5    19.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 138 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    134J  ASP      2.9    14.1    +      -       -      +
    135J  VAL*     3.1    11.9    +      -       -      +
    137J  ASP*     1.3    78.0    -      -       -      +
    139J  GLU*     1.3    61.9    +      -       +      +
    140J  GLY      3.5     0.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 139 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     21J  SER      3.6    20.2    -      -       -      +
     22J  LEU*     3.2    23.0    -      -       +      +
     23J  ALA*     3.6     5.0    +      -       -      +
     24J  ASP*     3.0    35.7    +      -       +      +
     25J  SER*     2.6    44.9    +      -       -      +
    135J  VAL      3.1    13.8    +      -       -      +
    136J  SER      3.3     0.9    +      -       -      +
    137J  ASP      3.2     0.2    -      -       -      -
    138J  GLU*     1.3    77.9    -      -       +      +
    140J  GLY*     1.3    62.3    +      -       -      +
    141J  ASP      3.3     1.0    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il