Contacts of the helix formed by residues 141 - 166 (chain I) in PDB entry 1UMN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 141 (chain I).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152A LYS* 5.0 1.3 + - - +
22I LEU* 4.2 20.2 - - + +
25I SER* 4.0 17.2 - - - +
79I ARG* 3.0 25.9 + - - -
83I LEU* 3.4 18.4 - - - +
136I SER* 2.9 14.4 + - - +
137I ASP* 5.6 0.2 - - - -
139I GLU 3.2 1.2 - - - -
140I GLY* 1.3 73.8 - - - +
142I SER* 1.3 56.8 + - - +
143I VAL 3.6 1.6 + - - -
144I THR* 2.5 30.8 + - - -
145I ASN* 3.0 25.9 + - - +
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Residues in contact with SER 142 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130A GLN* 4.8 8.8 + - - -
133A PHE* 3.2 41.0 - - - -
149A ASN* 2.6 33.5 + - - +
152A LYS* 4.8 2.7 + - - +
140I GLY 3.1 8.9 + - - -
141I ASP* 1.3 71.4 - - - +
143I VAL* 1.3 66.2 + - - +
145I ASN* 3.4 9.5 - - - +
146I ASP* 3.0 18.9 + - - +
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Residues in contact with VAL 143 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149A ASN* 3.7 18.8 - - - +
152A LYS* 3.3 26.9 - - + +
153A ALA* 3.4 43.5 - - + +
156A GLU* 4.1 0.4 - - - +
79I ARG* 3.5 36.6 - - - +
141I ASP* 3.3 1.4 + - - -
142I SER* 1.3 72.0 + - - +
144I THR* 1.3 66.6 + - - +
146I ASP* 3.1 5.9 + - - +
147I ILE* 3.1 30.6 + - + +
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Residues in contact with THR 144 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25I SER* 4.6 4.5 - - - -
29I LEU* 4.0 17.7 - - + -
79I ARG* 3.3 19.6 + - - +
83I LEU* 3.8 3.3 - - - +
136I SER* 3.6 12.8 - - - -
141I ASP* 2.5 33.7 + - - +
143I VAL* 1.3 77.3 - - - +
145I ASN* 1.3 62.7 + - - +
147I ILE* 3.2 12.9 + - - +
148I PHE* 3.2 47.9 + - + -
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Residues in contact with ASN 145 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133I PHE* 2.8 67.3 + - - +
136I SER* 3.1 14.7 + - - +
137I ASP* 3.4 21.6 - - - +
141I ASP 3.0 14.0 + - - +
142I SER* 3.4 14.9 - - - +
143I VAL 3.1 0.2 - - - -
144I THR* 1.3 77.6 - - - +
146I ASP* 1.3 64.3 + - - +
148I PHE* 3.4 1.6 + - - +
149I ASN* 3.1 20.8 + - - +
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Residues in contact with ASP 146 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146A ASP* 4.4 15.1 - - - +
149A ASN* 3.9 12.1 - - - +
150A VAL* 5.2 7.8 - - - +
146E ASP* 4.6 13.0 - - - +
142I SER 3.0 16.2 + - - +
143I VAL* 3.7 4.7 - - - +
145I ASN* 1.3 75.4 + - - +
147I ILE* 1.3 67.1 - - - +
149I ASN* 3.1 9.7 + - - +
150I VAL* 2.9 40.8 + - - +
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Residues in contact with ILE 147 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29I LEU* 5.5 2.7 - - + -
75I GLU* 4.0 39.2 - - + +
76I MET* 3.9 30.5 - - + -
79I ARG* 3.8 37.5 - - + -
143I VAL* 3.1 20.9 + - + +
144I THR* 3.2 8.9 + - + +
146I ASP* 1.3 78.5 + - + +
148I PHE* 1.3 63.8 + - + +
150I VAL* 3.6 4.4 + - - +
151I ALA* 3.2 21.7 + - - +
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Residues in contact with PHE 148 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28I VAL* 4.0 24.2 - - + -
29I LEU* 3.7 21.1 - - + -
32I ALA* 4.3 6.3 - - + -
76I MET* 3.9 22.0 - - + -
128I LEU* 4.7 0.9 - - + -
129I PHE* 3.6 50.6 - + - +
132I GLY* 3.5 32.3 - - - -
133I PHE* 3.9 5.8 - - - +
136I SER* 4.5 0.2 - - - -
144I THR* 3.2 42.4 + - + -
145I ASN 3.9 5.6 - - - +
147I ILE* 1.3 79.1 - - + +
149I ASN* 1.3 57.1 + - - +
151I ALA* 3.4 3.5 + - - +
152I LYS* 2.9 31.9 + - - +
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Residues in contact with ASN 149 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142E SER* 2.7 52.3 + - - +
143E VAL* 3.5 17.3 - - - +
146E ASP* 3.9 15.2 - - - +
133I PHE* 3.9 12.1 - - + -
145I ASN 3.1 17.3 + - - +
146I ASP* 3.5 12.9 - - - +
148I PHE* 1.3 78.5 - - - +
150I VAL* 1.3 64.0 + - + +
152I LYS* 3.8 6.2 - - - +
153I ALA* 3.1 22.5 + - - +
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Residues in contact with VAL 150 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146E ASP* 4.7 11.7 - - - +
72I TYR* 5.2 2.6 - - + -
75I GLU* 5.6 7.9 - - - +
146I ASP* 2.9 37.8 + - - +
147I ILE* 4.1 4.9 - - - +
149I ASN* 1.3 73.2 - - + +
151I ALA* 1.3 67.4 + - - +
153I ALA* 3.3 7.6 + - + +
154I SER* 3.3 21.2 + - - -
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Residues in contact with ALA 151 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72I TYR* 3.4 37.3 + - + -
75I GLU* 5.6 1.3 + - - +
76I MET* 3.9 9.2 - - + -
129I PHE* 3.5 25.1 - - + -
147I ILE 3.2 16.4 + - - +
148I PHE 3.8 1.8 - - - +
150I VAL* 1.3 80.3 - - - +
152I LYS* 1.3 63.7 + - - +
154I SER 3.2 2.3 + - - -
155I ILE* 3.0 21.7 + - - +
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Residues in contact with LYS 152 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79E ARG* 4.0 7.7 - - - +
141E ASP* 5.1 1.0 + - - -
142E SER* 5.4 3.4 + - - +
143E VAL* 3.5 17.6 - - + +
126I ALA* 4.1 21.8 - - - +
129I PHE* 3.5 17.2 - - + +
130I GLN* 3.3 35.7 - - - +
133I PHE* 6.0 2.2 - - + -
148I PHE 2.9 19.0 + - - +
149I ASN* 3.8 10.1 - - - +
151I ALA* 1.3 75.6 - - - +
153I ALA* 1.3 63.9 + - - +
155I ILE* 3.3 3.3 + - - +
156I GLU* 2.8 72.4 + - + +
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Residues in contact with ALA 153 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79E ARG* 5.1 1.6 + - - -
143E VAL* 3.5 34.4 - - + +
149I ASN 3.1 13.0 + - - +
150I VAL* 3.5 11.7 - - + +
151I ALA 3.2 0.2 - - - -
152I LYS* 1.3 78.9 - - - +
154I SER* 1.3 61.0 + - - +
156I GLU* 3.5 4.6 + - - +
157I LYS* 3.2 24.9 + - - +
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Residues in contact with SER 154 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68I GLU* 2.5 34.4 + - - -
72I TYR* 3.4 7.2 - - - -
150I VAL* 3.3 8.6 + - - -
151I ALA 3.2 3.4 + - - -
153I ALA* 1.3 76.4 - - - +
155I ILE* 1.3 65.7 - - - +
157I LYS* 3.1 11.6 + - - +
158I HIS* 3.0 27.6 + - - -
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Residues in contact with ILE 155 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68I GLU* 3.9 5.4 - - - +
69I ILE* 4.3 13.9 - - + -
72I TYR* 3.4 33.2 - - + +
122I PHE* 3.5 50.7 - - + +
125I LEU* 4.7 4.0 - - + -
126I ALA* 4.4 8.1 - - + +
129I PHE* 3.9 12.8 - - + -
151I ALA 3.0 17.0 + - - +
152I LYS* 3.9 5.4 - - - +
154I SER* 1.3 75.7 - - - +
156I GLU* 1.3 59.3 + - - +
158I HIS* 3.1 13.5 + - + +
159I ILE* 3.0 28.7 + - + +
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Residues in contact with GLU 156 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79E ARG* 2.7 37.3 + - - +
82E THR* 3.4 12.3 - - + +
143E VAL* 4.0 2.3 - - - +
126I ALA* 4.3 14.4 - - + +
152I LYS* 2.8 60.6 + - + +
153I ALA 3.8 3.8 - - - +
155I ILE* 1.3 74.9 - - - +
157I LYS* 1.3 64.1 + - - +
159I ILE* 3.2 9.4 + - - +
160I TRP 3.2 17.2 + - - -
172I LEU* 3.9 31.0 - - + +
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Residues in contact with LYS 157 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75E GLU* 4.6 22.7 + - - -
78E GLU* 2.8 45.8 + - - +
79E ARG* 4.7 3.2 - - - +
82E THR* 4.3 11.5 + - - +
153I ALA 3.2 13.9 + - - +
154I SER* 3.1 15.1 + - - +
156I GLU* 1.3 77.1 - - - +
158I HIS* 1.3 68.6 + - + +
160I TRP* 3.3 25.0 + - + +
161I MET* 3.2 25.9 + - + +
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Residues in contact with HIS 158 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61I LYS* 6.3 0.4 - - - -
65I TYR* 3.6 35.7 + + - +
68I GLU* 2.6 37.6 + - - -
122I PHE* 3.7 22.9 - + + -
154I SER* 3.0 24.0 + - - -
155I ILE* 3.1 12.3 + - + +
157I LYS* 1.3 80.6 - - + +
159I ILE* 1.3 59.5 + - - +
161I MET* 3.3 14.2 + - - +
162I LEU* 2.9 35.1 + - - +
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Residues in contact with ILE 159 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119I VAL* 4.5 8.3 - - + +
122I PHE* 3.7 21.3 - - + +
123I ARG* 3.7 47.6 - - + +
126I ALA* 4.5 5.4 - - + -
155I ILE* 3.0 20.5 + - + +
156I GLU* 3.2 10.2 + - - +
158I HIS* 1.3 76.7 - - - +
160I TRP* 1.3 58.6 + - - +
162I LEU* 3.9 6.0 - - - +
163I GLN* 2.9 42.6 + - + +
170I PRO 3.7 23.8 - - - +
172I LEU* 3.9 20.9 - - + -
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Residues in contact with TRP 160 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78E GLU* 3.8 35.9 - - + -
81E ILE* 3.5 38.8 - - + +
82E THR* 3.7 26.7 - - - +
48G TRP* 4.8 6.4 + + - -
50G MET 5.3 0.8 + - - -
51G ARG* 6.3 1.1 - - - -
55G PHE* 4.1 12.0 - + - -
59G HIS* 3.7 35.7 - + - -
107G TYR* 5.9 0.4 - - - -
156I GLU 3.2 6.5 + - - +
157I LYS* 3.4 31.9 - - + +
159I ILE* 1.3 79.6 - - - +
161I MET* 1.3 68.1 + - + +
163I GLN* 3.8 1.4 - - - +
164I ALA* 2.9 37.1 + - + +
168I GLN 6.1 0.2 - - - -
170I PRO* 3.8 29.9 - - + +
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Residues in contact with MET 161 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78E GLU* 5.6 2.7 - - - +
55G PHE* 3.8 22.6 - - + -
56G MET* 3.9 30.0 - - + +
59G HIS* 3.4 37.9 - - + +
60G PRO* 5.9 0.7 - - + -
61I LYS* 6.1 0.7 - - - -
65I TYR* 5.3 2.5 - - - +
157I LYS* 3.2 19.7 + - + +
158I HIS* 3.3 16.6 + - - +
160I TRP* 1.3 94.2 - - + +
162I LEU* 1.3 65.5 + - - +
164I ALA* 3.3 3.2 + - - +
165I GLU* 2.9 23.7 + - - +
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Residues in contact with LEU 162 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58I TRP* 3.5 29.4 - - + -
62I MET* 5.0 0.2 - - + -
65I TYR* 3.7 20.0 - - + +
115I LEU* 4.0 28.0 - - + +
118I VAL* 4.0 12.6 - - + -
119I VAL* 3.5 22.7 - - + +
122I PHE* 3.9 28.9 - - + -
158I HIS 2.9 21.5 + - - +
159I ILE* 3.9 1.6 - - - +
161I MET* 1.3 76.3 - - - +
163I GLN* 1.3 63.9 + - - +
165I GLU* 3.2 7.5 + - - +
166I LEU* 3.1 27.4 + - + +
----------------------------------------------------------
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Residues in contact with GLN 163 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116I ALA* 5.7 0.4 - - - +
119I VAL* 3.6 26.3 - - + +
123I ARG* 3.4 23.6 + - - +
159I ILE* 2.9 25.3 + - + +
160I TRP 3.8 3.4 - - - +
162I LEU* 1.3 77.6 - - - +
164I ALA* 1.3 56.4 + - - +
166I LEU* 3.0 18.0 + - - +
167I GLY 3.0 5.4 + - - -
168I GLN* 2.7 59.7 + - - +
169I ALA 3.0 32.5 - - - +
170I PRO* 3.9 5.8 - - + +
171I LYS* 3.4 2.4 - - - -
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Residues in contact with ALA 164 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50G MET 3.7 21.3 - - - +
51G ARG* 3.3 9.9 - - + +
52G GLY 2.6 32.7 + - - -
55G PHE* 3.8 18.2 - - + -
160I TRP* 2.9 26.2 + - + +
161I MET 3.6 5.2 - - - +
162I LEU 3.3 0.2 - - - -
163I GLN* 1.3 72.5 - - - +
165I GLU* 1.3 56.4 + - - +
167I GLY 2.8 8.5 + - - -
168I GLN 3.5 8.9 + - - +
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Residues in contact with GLU 165 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52G GLY 3.1 24.7 - - - -
53G ARG* 2.9 34.5 + - - +
54G GLY* 2.8 25.1 + - - -
55G PHE* 3.2 7.4 + - + +
56G MET* 2.9 29.6 + - - +
58I TRP* 3.4 40.5 + - + +
115I LEU* 3.9 10.3 - - + -
161I MET 2.9 13.7 + - - +
162I LEU* 3.5 9.0 - - - +
164I ALA* 1.3 76.0 - - - +
166I LEU* 1.3 57.1 + - - +
167I GLY 3.3 1.0 + - - -
1174I EPE 4.4 2.4 + - - -
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Residues in contact with LEU 166 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52G GLY* 5.2 0.2 - - - -
53G ARG* 5.0 2.0 - - - +
112I GLU* 3.8 44.2 - - + +
115I LEU* 4.1 18.6 - - + -
116I ALA* 4.0 29.6 - - + +
119I VAL* 4.5 1.3 - - + -
162I LEU 3.1 14.1 + - - +
163I GLN* 3.0 27.3 + - - +
164I ALA 3.0 0.8 - - - -
165I GLU* 1.3 78.7 - - - +
167I GLY* 1.3 60.1 + - - -
168I GLN* 3.3 21.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il