Contacts of the helix formed by residues 554 - 634 (chain C) in PDB entry 1X79
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 554 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270A THR 5.2 0.4 + - - -
272A ASP* 3.0 48.0 + - - +
274A ASP* 3.3 25.9 + - - +
277A LEU* 4.9 6.5 - - - +
553B THR* 4.8 9.8 + - - -
556B GLN* 5.8 2.4 - - - +
553C THR* 1.3 76.2 - - - +
555C ASP* 1.3 62.8 + - - +
556C GLN 2.9 1.1 - - - -
557C VAL* 2.5 60.4 + - - +
558C LYS* 2.9 23.9 + - + +
561C GLN* 5.0 2.2 + - - -
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Residues in contact with ASP 555 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
553C THR* 3.8 15.2 + - - +
554C ARG* 1.3 78.7 - - - +
556C GLN* 1.3 54.2 + - - +
558C LYS* 4.1 18.1 - - - +
559C LYS* 2.4 62.6 + - - +
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Residues in contact with GLN 556 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
553B THR* 5.1 3.0 - - - +
557B VAL* 3.6 35.0 - - + +
561B GLN* 5.4 2.6 + - - -
553C THR* 3.6 33.4 + - - +
554C ARG 2.7 3.0 + - - +
555C ASP* 1.3 79.0 - - - +
557C VAL* 1.3 57.9 + - - +
559C LYS* 3.4 10.4 - - - +
560C LEU* 2.9 34.2 + - + +
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Residues in contact with VAL 557 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277A LEU* 4.1 8.3 - - + -
553B THR* 4.7 4.9 - - - +
556B GLN* 4.0 23.3 - - + -
557B VAL* 3.7 21.5 - - + -
560B LEU* 3.8 21.9 - - + +
553C THR 4.5 7.2 - - - +
554C ARG* 2.5 40.8 + - - +
556C GLN* 1.3 73.2 - - - +
558C LYS* 1.3 67.7 + - - +
560C LEU* 3.4 0.4 + - - -
561C GLN* 2.8 42.6 + - - +
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Residues in contact with LYS 558 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554C ARG* 2.9 24.8 + - + +
555C ASP* 3.8 17.5 - - - +
557C VAL* 1.3 74.7 - - - +
559C LYS* 1.3 59.0 + - - +
561C GLN* 3.1 16.8 + - + +
562C LEU* 3.0 60.4 + - + +
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Residues in contact with LYS 559 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555C ASP* 2.4 49.9 + - - +
556C GLN* 3.4 9.2 - - - +
558C LYS* 1.3 74.9 - - - +
560C LEU* 1.3 61.8 + - - +
562C LEU* 3.5 10.0 + - - +
563C MET* 3.2 34.7 + - + +
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Residues in contact with LEU 560 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
557B VAL* 3.8 28.3 - - + +
560B LEU* 3.7 33.4 - - + -
561B GLN* 3.8 28.0 - - + +
564B LEU* 4.2 17.7 - - + +
556C GLN* 2.9 21.4 + - + +
557C VAL 3.9 3.1 - - - +
559C LYS* 1.3 73.4 - - + +
561C GLN* 1.3 62.3 + - - +
563C MET* 3.1 24.1 + - + +
564C LEU* 2.7 31.3 + - - +
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Residues in contact with GLN 561 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267A ALA 2.8 28.4 + - - +
268A SER* 3.5 22.1 - - - +
270A THR* 3.1 35.6 + - - +
271A GLU* 5.4 0.9 - - - -
272A ASP 5.3 1.0 + - - -
277A LEU* 4.2 6.7 - - - +
560B LEU* 4.0 14.3 - - + +
554C ARG* 5.0 1.7 + - - -
557C VAL* 2.8 37.3 + - - +
558C LYS* 3.1 16.0 + - + +
560C LEU* 1.3 75.6 - - - +
562C LEU* 1.3 61.0 + - + +
564C LEU* 3.1 8.7 + - - +
565C ARG* 2.9 25.5 + - - +
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Residues in contact with LEU 562 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268A SER 5.8 2.0 - - - +
558C LYS* 3.0 47.0 + - + +
559C LYS* 3.9 9.4 - - - +
560C LEU 3.2 0.2 - - - -
561C GLN* 1.3 74.4 - - + +
563C MET* 1.3 64.7 + - - +
565C ARG* 3.9 8.0 - - + +
566C GLN* 3.0 34.0 + - - +
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Residues in contact with MET 563 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564B LEU* 3.9 27.4 - - + +
559C LYS* 3.2 31.5 + - + +
560C LEU* 3.1 32.0 + - + +
562C LEU* 1.3 78.3 - - - +
564C LEU* 1.3 61.7 + - - +
566C GLN* 3.2 10.3 + - - +
567C ALA* 3.0 21.1 + - - +
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Residues in contact with LEU 564 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264A PHE* 3.3 46.2 - - + +
267A ALA* 4.3 2.5 - - + -
268A SER* 4.2 11.4 - - - +
560B LEU* 4.5 12.3 - - + +
563B MET* 4.0 30.5 - - + -
564B LEU* 3.8 25.1 - - + +
567B ALA* 4.3 14.4 - - + -
560C LEU* 2.7 20.4 + - + +
561C GLN* 3.4 6.1 - - - +
563C MET* 1.3 74.3 - - - +
565C ARG* 1.3 58.6 + - - +
567C ALA* 3.2 1.1 + - - +
568C ASN* 2.8 28.1 + - - +
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Residues in contact with ARG 565 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A ARG* 2.8 56.9 - - - +
268A SER* 3.8 15.2 - - - +
269A ASP* 4.7 2.6 + - - -
561C GLN 2.9 16.5 + - - +
562C LEU* 3.9 11.4 - - + +
564C LEU* 1.3 74.1 - - - +
566C GLN* 1.3 71.7 + - - +
568C ASN* 3.3 3.0 + - - +
569C ASP* 2.5 71.9 + - - +
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Residues in contact with GLN 566 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
562C LEU* 3.0 24.2 + - - +
563C MET* 3.3 10.1 - - - +
565C ARG* 1.3 84.4 - - - +
567C ALA* 1.3 64.4 + - - +
569C ASP* 3.4 11.5 + - - +
570C GLN* 3.3 22.7 + - - +
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Residues in contact with ALA 567 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564B LEU* 4.6 7.2 - - + +
567B ALA* 3.9 26.7 - - + -
568B ASN* 5.5 0.9 - - - +
571B LEU* 5.0 5.7 - - + +
563C MET 3.0 13.3 + - - +
564C LEU* 3.2 11.9 + - + +
566C GLN* 1.3 75.1 - - - +
568C ASN* 1.3 60.0 + - - +
570C GLN* 3.0 9.3 + - - +
571C LEU* 2.8 28.3 + - - +
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Residues in contact with ASN 568 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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261A PRO* 3.0 32.6 + - - +
264A PHE* 3.3 23.6 - - + +
265A ARG* 3.0 38.1 - - - +
564C LEU* 2.8 16.9 + - - +
565C ARG* 3.8 7.6 - - - +
567C ALA* 1.3 74.3 - - - +
569C ASP* 1.3 67.1 + - - +
571C LEU* 3.3 6.4 + - - +
572C GLU* 2.9 49.7 + - - +
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Residues in contact with ASP 569 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A ARG* 4.7 5.0 + - - -
565C ARG* 2.5 61.7 + - - +
566C GLN* 3.8 11.8 + - - +
567C ALA 3.4 0.2 - - - -
568C ASN* 1.3 75.9 - - - +
570C GLN* 1.3 64.5 + - - +
572C GLU* 3.4 10.6 + - - +
573C LYS* 3.2 23.6 + - - +
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Residues in contact with GLN 570 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
571B LEU* 4.3 24.7 - - + -
575B MET* 6.3 0.2 - - - -
566C GLN 3.3 10.8 + - - +
567C ALA* 3.0 11.4 + - - +
569C ASP* 1.3 81.2 - - - +
571C LEU* 1.3 67.5 + - - +
573C LYS* 3.3 11.8 + - - +
574C THR* 3.0 31.1 + - - +
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Residues in contact with LEU 571 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
261A PRO* 3.9 20.2 - - + -
264A PHE* 3.9 31.6 - - + -
567B ALA* 4.4 5.8 - - + +
570B GLN* 4.1 15.3 - - + +
571B LEU* 3.9 37.9 - - + +
574B THR* 4.2 9.6 - - - +
567C ALA 2.8 12.3 + - - +
568C ASN* 3.5 11.9 - - - +
570C GLN* 1.3 75.6 - - - +
572C GLU* 1.3 57.3 + - + +
574C THR* 3.2 1.6 + - - -
575C MET* 2.8 46.0 + - + +
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Residues in contact with GLU 572 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
261A PRO* 4.2 12.5 - - + +
262A THR* 5.5 1.0 - - - -
265A ARG* 4.8 11.9 + - - +
568C ASN* 2.9 51.5 + - - +
569C ASP* 3.8 11.0 - - - +
570C GLN 3.1 0.4 - - - -
571C LEU* 1.3 73.0 - - - +
573C LYS* 1.3 66.8 + - - +
575C MET* 3.2 18.4 + - + +
576C LYS* 2.9 25.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 573 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
578B LYS* 5.2 1.8 - - - +
569C ASP 3.2 14.8 + - - +
570C GLN* 3.7 12.3 - - - +
572C GLU* 1.3 80.1 - - - +
574C THR* 1.3 66.6 + - - +
576C LYS* 3.3 12.3 + - + +
577C ASP* 2.9 56.5 + - - +
----------------------------------------------------------
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Residues in contact with THR 574 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
571B LEU* 3.8 12.1 - - + +
574B THR* 3.3 27.7 - - + +
575B MET* 3.7 30.1 - - + +
578B LYS* 4.6 13.9 + - + +
570C GLN* 3.0 21.0 + - - +
571C LEU 3.7 3.6 - - - -
573C LYS* 1.3 85.1 - - - +
575C MET* 1.3 61.5 + - - +
577C ASP* 3.4 6.6 + - - +
578C LYS* 3.1 18.2 + - - +
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Residues in contact with MET 575 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
258A ARG* 5.4 13.2 - - + +
261A PRO* 3.4 30.3 - - + -
570B GLN* 3.6 26.5 - - - -
574B THR* 3.9 20.6 - - + +
571C LEU* 2.8 21.7 + - + +
572C GLU* 3.2 21.3 + - + +
574C THR* 1.3 74.1 - - - +
576C LYS* 1.3 65.6 + - - +
578C LYS* 3.4 4.6 + - + +
579C GLN* 3.0 23.7 + - - +
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Residues in contact with LYS 576 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
572C GLU 2.9 13.4 + - - +
573C LYS* 3.5 16.2 - - + +
575C MET* 1.3 77.0 - - - +
577C ASP* 1.3 66.6 + - - +
579C GLN* 3.1 9.5 + - - +
580C GLU* 2.9 44.9 + - - +
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Residues in contact with ASP 577 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
578B LYS* 3.1 36.1 + - + -
573C LYS* 2.9 51.8 + - - +
574C THR* 3.6 7.5 - - - +
576C LYS* 1.3 80.3 - - - +
578C LYS* 1.3 62.8 + - - +
580C GLU* 3.4 17.4 + - - +
581C LEU* 3.2 27.7 + - - +
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Residues in contact with LYS 578 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
573B LYS* 5.0 4.9 - - - +
574B THR* 4.6 16.9 + - + +
577B ASP* 3.1 42.3 + - + +
578B LYS* 4.5 15.2 - - + +
581B LEU* 3.9 13.9 - - + -
574C THR 3.1 16.9 + - - +
575C MET* 3.8 7.0 - - + +
576C LYS 3.3 0.2 - - - -
577C ASP* 1.3 75.5 - - - +
579C GLN* 1.3 64.7 + - - +
581C LEU* 3.2 8.1 + - - +
582C GLU* 2.9 47.6 + - - +
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Residues in contact with GLN 579 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
575C MET 3.0 13.6 + - - +
576C LYS* 3.4 12.3 - - + +
578C LYS* 1.3 77.1 - - - +
580C GLU* 1.3 56.9 + - - +
582C GLU* 3.2 21.5 + - - +
583C ASP* 3.0 56.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 580 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
576C LYS* 2.9 42.7 + - - +
577C ASP* 3.6 21.3 - - - +
578C LYS 3.2 0.2 - - - -
579C GLN* 1.3 74.9 - - + +
581C LEU* 1.3 66.5 + - + +
583C ASP* 3.2 11.0 + - - +
584C PHE* 2.9 23.3 + - - +
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Residues in contact with LEU 581 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
578B LYS* 3.7 30.3 - - + +
581B LEU* 3.9 18.2 - - + -
582B GLU* 3.6 34.1 - - + +
585B ILE* 4.0 19.7 - - + +
577C ASP 3.2 11.7 + - - +
578C LYS* 3.6 5.2 - - - +
580C GLU* 1.3 77.5 - - + +
582C GLU* 1.3 63.5 + - - +
584C PHE* 3.2 7.3 + - + +
585C ILE* 2.9 29.4 + - - +
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Residues in contact with GLU 582 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
581B LEU* 3.6 20.5 - - + +
578C LYS* 2.9 43.5 + - - +
579C GLN* 3.6 30.8 + - - +
580C GLU 3.2 0.2 - - - -
581C LEU* 1.3 77.4 - - - +
583C ASP* 1.3 63.0 + - - +
585C ILE* 3.5 10.0 + - - +
586C LYS* 3.2 20.3 + - - +
----------------------------------------------------------
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Residues in contact with ASP 583 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
579C GLN* 3.0 42.9 + - - +
580C GLU* 3.5 11.3 - - - +
582C GLU* 1.3 75.2 - - - +
584C PHE* 1.3 57.7 + - - +
586C LYS* 2.8 28.6 + - - +
587C GLN* 2.8 15.7 + - - +
----------------------------------------------------------
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Residues in contact with PHE 584 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
585B ILE* 3.6 31.6 - - + -
394C DTT 3.2 26.7 - - + -
580C GLU 2.9 13.0 + - - +
581C LEU* 3.4 11.9 - - + +
583C ASP* 1.3 77.5 - - - +
585C ILE* 1.3 66.2 + - - +
586C LYS 2.9 1.0 + - - -
587C GLN* 3.1 6.9 + - + +
588C SER* 2.9 35.5 + - - -
----------------------------------------------------------
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Residues in contact with ILE 585 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
581B LEU* 3.5 33.2 - - + -
584B PHE* 3.9 27.8 - - + -
585B ILE* 3.7 25.8 - - + -
394C DTT 3.8 21.4 - - - +
581C LEU 2.9 20.0 + - - +
582C GLU* 3.6 7.6 - - - +
584C PHE* 1.3 78.9 - - - +
586C LYS* 1.3 58.5 + - - +
588C SER* 3.6 0.9 + - - -
589C SER* 2.9 32.8 + - - -
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Residues in contact with LYS 586 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582C GLU 3.2 11.5 + - - +
583C ASP* 2.8 15.5 + - - +
585C ILE* 1.3 77.0 - - - +
587C GLN* 1.3 65.3 + - - +
589C SER* 3.4 4.1 + - - -
590C GLU* 2.9 57.2 + - + +
----------------------------------------------------------
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Residues in contact with GLN 587 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583C ASP 2.8 16.6 + - - +
584C PHE* 3.8 8.3 - - + +
586C LYS* 1.3 73.2 - - - +
588C SER* 1.3 64.3 + - - +
590C GLU* 3.1 17.5 + - - +
591C ASP* 3.0 56.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 588 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394C DTT 3.0 41.7 + - - +
584C PHE* 2.9 27.3 + - - -
585C ILE 3.6 0.2 + - - -
587C GLN* 1.3 78.6 - - - +
589C SER* 1.3 67.1 + - - +
591C ASP* 3.2 11.5 + - - +
592C SER* 3.0 26.6 + - - -
----------------------------------------------------------
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Residues in contact with SER 589 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394C DTT 3.6 20.0 - - - -
585C ILE* 2.9 21.8 + - - -
586C LYS* 3.7 5.4 - - - -
588C SER* 1.3 84.4 + - - +
590C GLU* 1.3 61.0 + - - +
592C SER* 3.4 7.6 + - - -
593C SER* 3.3 20.6 + - - -
----------------------------------------------------------
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Residues in contact with GLU 590 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
586C LYS* 2.9 61.1 + - + +
587C GLN* 3.1 19.2 + - - +
589C SER* 1.3 74.3 - - - +
591C ASP* 1.3 71.0 + - - +
592C SER 3.2 0.7 + - - -
593C SER* 3.2 16.5 + - - -
594C HIS* 3.2 12.6 + - - +
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Residues in contact with ASP 591 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587C GLN* 3.0 45.0 + - - +
588C SER* 3.2 11.8 + - - +
590C GLU* 1.3 78.2 - - - +
592C SER* 1.3 62.0 + - - +
594C HIS* 3.4 10.1 + - - +
595C GLN* 3.0 22.4 + - - +
----------------------------------------------------------
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Residues in contact with SER 592 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394C DTT 5.7 4.0 - - - +
588C SER 3.0 15.1 + - - -
589C SER* 3.5 12.6 - - - -
590C GLU 3.1 0.4 - - - -
591C ASP* 1.3 73.8 - - - +
593C SER* 1.3 56.8 + - - +
595C GLN* 3.0 7.6 + - - +
596C ILE* 2.6 47.7 + - - +
----------------------------------------------------------
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Residues in contact with SER 593 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
589C SER 3.3 9.0 + - - -
590C GLU* 3.2 12.2 + - - -
592C SER* 1.3 77.6 - - - +
594C HIS* 1.3 66.3 + - - -
595C GLN 3.0 0.2 + - - -
596C ILE* 4.4 5.4 - - - -
597C SER* 2.8 30.9 + - - -
----------------------------------------------------------
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Residues in contact with HIS 594 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
590C GLU 3.2 9.1 + - - +
591C ASP* 3.6 11.0 - - - +
593C SER* 1.3 79.6 - - - +
595C GLN* 1.3 76.5 + - - +
597C SER* 3.4 5.7 + - - -
598C ALA* 3.1 28.2 + - + +
----------------------------------------------------------
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Residues in contact with GLN 595 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591C ASP 3.0 12.5 + - - +
592C SER* 3.0 12.4 + - - +
594C HIS* 1.3 86.0 + - - +
596C ILE* 1.3 70.5 + - + +
598C ALA* 3.1 8.4 + - - +
599C LEU* 3.0 35.7 + - + +
----------------------------------------------------------
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Residues in contact with ILE 596 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
592C SER* 2.6 34.0 + - - +
593C SER* 3.6 6.7 - - - +
595C GLN* 1.3 72.3 - - + +
597C SER* 1.3 66.2 + - - +
599C LEU* 2.9 19.7 + - + +
600C VAL* 2.7 39.3 + - + +
----------------------------------------------------------
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Residues in contact with SER 597 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593C SER* 2.8 24.6 + - - -
594C HIS* 3.7 6.1 - - - -
596C ILE* 1.3 74.2 - - - +
598C ALA* 1.3 62.0 + - - +
600C VAL* 3.3 8.8 + - - +
601C LEU* 3.0 23.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA 598 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
594C HIS* 3.1 22.5 + - + +
595C GLN* 3.1 10.5 + - - +
597C SER* 1.3 74.8 - - - +
599C LEU* 1.3 66.9 + - + +
601C LEU* 3.0 12.5 + - + +
602C ARG* 3.0 31.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 599 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
599B LEU* 6.1 4.7 - - + -
595C GLN* 3.0 26.8 + - + +
596C ILE* 2.9 21.3 + - + +
598C ALA* 1.3 79.1 - - + +
600C VAL* 1.3 57.0 + - + +
602C ARG* 3.4 19.9 + - - +
603C ALA* 2.9 28.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL 600 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
596C ILE* 2.7 37.8 + - + +
597C SER* 3.7 9.9 - - - +
599C LEU* 1.3 73.3 - - + +
601C LEU* 1.3 63.2 + - - +
603C ALA* 3.1 7.9 + - + +
604C GLN* 2.9 51.1 + - + +
----------------------------------------------------------
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Residues in contact with LEU 601 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
597C SER 3.0 13.3 + - - +
598C ALA* 3.4 12.1 - - - +
600C VAL* 1.3 74.4 - - - +
602C ARG* 1.3 65.8 + - - +
604C GLN* 2.9 21.4 + - + +
605C ALA* 2.9 26.9 + - + +
----------------------------------------------------------
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Residues in contact with ARG 602 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
598C ALA* 3.0 20.7 + - - +
599C LEU* 3.7 24.6 - - - +
601C LEU* 1.3 78.1 - - - +
603C ALA* 1.3 63.2 + - - +
605C ALA* 4.0 6.5 - - + +
606C SER* 2.8 34.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 603 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
599C LEU 2.9 15.4 + - - +
600C VAL* 3.1 12.8 + - + +
602C ARG* 1.3 75.3 - - - +
604C GLN* 1.3 59.6 + - + +
606C SER* 3.2 9.3 + - - -
607C GLU* 2.9 28.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 604 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600C VAL* 2.9 33.0 - - + +
601C LEU* 2.9 23.4 + - + +
603C ALA* 1.3 78.6 - - + +
605C ALA* 1.3 61.1 + - - +
607C GLU* 3.3 12.9 + - - +
608C ILE* 3.2 31.0 + - + +
----------------------------------------------------------
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Residues in contact with ALA 605 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
601C LEU* 2.9 20.2 + - + +
602C ARG* 4.0 7.0 - - + +
604C GLN* 1.3 73.2 - - - +
606C SER* 1.3 66.7 + - - +
608C ILE* 3.3 11.7 + - - +
609C LEU* 3.0 20.8 + - - +
----------------------------------------------------------
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Residues in contact with SER 606 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
602C ARG* 2.8 22.6 + - - +
603C ALA* 3.3 13.0 - - - -
605C ALA* 1.3 77.3 - - - +
607C GLU* 1.3 62.3 + - - +
609C LEU* 3.1 11.7 + - - +
610C LEU* 3.0 31.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 607 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
603C ALA 2.9 12.7 + - - +
604C GLN* 3.7 14.1 - - - +
605C ALA 3.2 0.4 - - - -
606C SER* 1.3 75.1 - - - +
608C ILE* 1.3 66.4 + - + +
610C LEU* 3.0 11.8 + - - +
611C GLU* 3.0 23.6 + - + +
----------------------------------------------------------
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Residues in contact with ILE 608 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604C GLN* 3.2 19.2 + - + +
605C ALA* 3.6 10.3 - - - +
606C SER 3.2 0.4 - - - -
607C GLU* 1.3 80.3 - - + +
609C LEU* 1.3 60.3 + - - +
611C GLU* 3.5 21.1 + - - +
612C GLU* 3.2 36.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 609 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
605C ALA 3.0 13.0 + - - +
606C SER* 3.1 12.5 + - - +
608C ILE* 1.3 73.4 - - - +
610C LEU* 1.3 70.9 + - + +
612C GLU* 3.0 20.0 + - + +
613C LEU* 3.0 45.1 + - + +
----------------------------------------------------------
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Residues in contact with LEU 610 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
610B LEU* 5.1 18.4 - - + -
606C SER* 3.0 21.0 + - - +
607C GLU* 3.6 9.6 - - - +
609C LEU* 1.3 79.5 - - + +
611C GLU* 1.3 65.1 + - - +
613C LEU* 3.3 22.9 + - + +
614C GLN* 2.9 30.8 + - + +
----------------------------------------------------------
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Residues in contact with GLU 611 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
607C GLU* 3.0 13.4 + - + +
608C ILE* 3.7 27.9 - - - +
610C LEU* 1.3 76.5 - - - +
612C GLU* 1.3 68.2 + - - +
614C GLN* 3.1 17.6 + - - +
615C GLN* 3.0 43.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 612 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608C ILE* 3.2 30.9 + - - +
609C LEU* 3.0 22.5 + - + +
611C GLU* 1.3 87.5 - - - +
613C LEU* 1.3 64.1 + - + +
615C GLN* 2.9 23.7 + - - +
616C GLY* 2.9 11.3 + - - -
----------------------------------------------------------
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Residues in contact with LEU 613 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
609C LEU* 3.0 38.3 + - + +
610C LEU* 3.3 26.2 + - + +
612C GLU* 1.3 76.0 - - + +
614C GLN* 1.3 64.1 + - + +
616C GLY* 3.1 2.9 + - - +
617C LEU* 2.9 29.0 + - + +
----------------------------------------------------------
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Residues in contact with GLN 614 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392C SO4 2.7 39.4 + - - -
610C LEU* 2.9 16.6 + - + +
611C GLU* 3.3 22.1 + - - +
612C GLU 3.1 0.2 - - - -
613C LEU* 1.3 77.7 - - - +
615C GLN* 1.3 61.6 + - + +
617C LEU* 3.3 10.0 + - + +
618C SER* 3.0 24.8 + - - -
----------------------------------------------------------
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Residues in contact with GLN 615 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611C GLU* 3.0 44.3 + - + +
612C GLU* 2.9 16.7 + - - +
614C GLN* 1.3 76.1 - - + +
616C GLY* 1.3 57.9 + - - +
618C SER* 3.2 9.1 + - - -
619C GLN* 3.0 26.3 + - - +
622C ARG* 5.3 1.0 + - - -
----------------------------------------------------------
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Residues in contact with GLY 616 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
612C GLU 2.9 12.1 + - - -
613C LEU* 3.1 5.3 + - - -
615C GLN* 1.3 75.5 - - - +
617C LEU* 1.3 64.6 + - - +
619C GLN* 3.1 8.8 + - - +
620C ALA* 2.9 21.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 617 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
617B LEU* 4.5 21.1 - - + -
613C LEU* 2.9 19.7 + - + +
614C GLN* 3.7 8.7 - - + +
615C GLN 3.3 0.2 - - - -
616C GLY* 1.3 75.8 - - - +
618C SER* 1.3 58.3 + - - +
620C ALA* 3.1 11.5 + - + +
621C LYS* 2.8 28.7 + - - +
----------------------------------------------------------
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Residues in contact with SER 618 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
614C GLN 3.0 14.2 + - - -
615C GLN* 3.4 11.9 - - - -
617C LEU* 1.3 74.0 - - - +
619C GLN* 1.3 66.1 + - - +
621C LYS* 3.3 10.6 + - - +
622C ARG* 3.0 42.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 619 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615C GLN 3.0 13.6 + - - +
616C GLY* 3.1 9.8 + - - +
618C SER* 1.3 75.7 - - - +
620C ALA* 1.3 57.2 + - - +
622C ARG* 2.4 41.6 + - - +
623C ASP* 2.8 57.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 620 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
616C GLY 2.9 13.7 + - - +
617C LEU* 3.1 17.0 + - + +
619C GLN* 1.3 74.6 - - - +
621C LYS* 1.3 65.1 + - - +
623C ASP* 3.2 11.3 + - - +
624C VAL* 3.0 26.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 621 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
617C LEU 2.8 19.3 + - - +
618C SER* 3.3 10.7 + - - +
620C ALA* 1.3 68.5 - - - +
622C ARG* 1.3 67.7 + - + +
624C VAL* 3.2 8.8 + - + +
625C GLN* 2.9 48.9 + - + +
----------------------------------------------------------
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Residues in contact with ARG 622 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615C GLN 5.3 0.6 + - - -
618C SER* 3.0 32.4 + - - +
619C GLN* 2.4 50.5 + - - +
621C LYS* 1.3 77.6 - - + +
623C ASP* 1.3 64.6 + - - +
625C GLN* 3.0 18.2 + - - +
626C GLU* 2.8 23.9 + - - +
----------------------------------------------------------
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Residues in contact with ASP 623 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
619C GLN* 2.8 46.6 + - - +
620C ALA* 3.2 14.4 + - - +
622C ARG* 1.3 74.7 - - - +
624C VAL* 1.3 57.9 + - + +
626C GLU* 3.2 16.5 + - - +
627C GLN* 2.9 28.3 + - - +
----------------------------------------------------------
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Residues in contact with VAL 624 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
624B VAL* 5.6 9.9 - - + -
620C ALA 3.0 13.8 + - - +
621C LYS* 3.6 11.9 - - + +
623C ASP* 1.3 76.0 - - + +
625C GLN* 1.3 65.5 + - + +
627C GLN* 3.2 14.3 + - - +
628C MET* 2.8 35.1 + - + +
----------------------------------------------------------
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Residues in contact with GLN 625 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
621C LYS* 2.9 37.7 + - + +
622C ARG* 3.0 25.9 + - - +
624C VAL* 1.3 80.6 - - + +
626C GLU* 1.3 57.9 + - - +
628C MET* 3.3 14.7 + - + +
629C ALA* 2.8 31.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 626 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
622C ARG 2.8 11.7 + - - +
623C ASP* 3.3 20.0 - - - +
625C GLN* 1.3 77.4 - - - +
627C GLN* 1.3 63.2 + - - +
629C ALA* 3.2 14.7 + - - +
630C VAL* 3.2 23.5 + - + +
----------------------------------------------------------
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Residues in contact with GLN 627 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
627B GLN* 3.0 42.2 + - - +
631B LEU* 4.4 15.5 - - + +
623C ASP 2.9 13.1 + - - +
624C VAL* 3.6 16.3 - - - +
626C GLU* 1.3 72.9 - - - +
628C MET* 1.3 71.1 + - - +
630C VAL* 3.2 9.3 + - + +
631C LEU* 3.1 34.4 + - + +
----------------------------------------------------------
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Residues in contact with MET 628 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
624C VAL* 2.8 24.1 + - + +
625C GLN* 3.4 13.2 - - + +
627C GLN* 1.3 80.6 + - - +
629C ALA* 1.3 68.4 + - - +
631C LEU* 3.0 13.6 + - + +
632C MET* 2.9 56.0 + - + +
----------------------------------------------------------
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Residues in contact with ALA 629 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
625C GLN 2.8 20.5 + - - +
626C GLU* 3.2 7.4 + - - +
628C MET* 1.3 76.4 - - + +
630C VAL* 1.3 63.6 + - + +
632C MET* 3.6 8.9 + - - +
633C GLN* 3.2 31.3 + - - +
----------------------------------------------------------
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Residues in contact with VAL 630 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B DTT 4.8 10.3 - - + +
626C GLU* 3.2 23.1 - - + +
627C GLN* 3.9 7.9 - - + +
628C MET 3.1 0.4 - - - -
629C ALA* 1.3 73.8 - - + +
631C LEU* 1.3 75.2 + - + +
633C GLN* 2.8 29.7 + - + +
634C SER* 2.9 21.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 631 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B DTT 3.7 33.4 - - + +
627B GLN* 4.1 23.3 - - - +
631B LEU* 5.3 4.9 - - + -
627C GLN* 3.1 25.5 + - + +
628C MET* 3.1 16.6 - - + +
630C VAL* 1.3 83.6 - - + +
632C MET* 1.3 58.6 + - + +
634C SER* 3.2 6.5 + - - -
635C ARG* 2.8 28.7 + - - +
----------------------------------------------------------
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Residues in contact with MET 632 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
628C MET* 2.9 49.9 + - + +
629C ALA* 3.8 9.0 - - - +
631C LEU* 1.3 72.6 - - + +
633C GLN* 1.3 67.4 + - - +
635C ARG* 3.0 37.8 + - - +
636C GLU* 3.4 12.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 633 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
629C ALA* 3.2 19.2 + - - +
630C VAL* 2.8 25.7 + - - +
632C MET* 1.3 72.5 - - + +
634C SER* 1.3 53.5 + - - +
636C GLU* 2.4 41.3 + - - +
637C GLN* 3.4 10.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 634 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B DTT 2.8 47.9 + - - +
630C VAL* 2.9 20.6 + - - +
631C LEU 3.3 4.2 + - - -
633C GLN* 1.3 71.2 - - - +
635C ARG* 1.3 54.6 + - - +
636C GLU 3.1 2.5 - - - -
637C GLN* 3.7 20.1 - - - +
638C VAL* 3.5 23.0 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il