Contacts of the helix formed by residues 158 - 226 (chain A) in PDB entry 1YC9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 158 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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155A ASP* 3.2 22.6 + - - -
156A PHE 3.5 0.6 - - - -
157A TRP* 1.3 79.8 - - - +
159A LYS* 1.3 64.3 + - - +
160A ASN 3.3 2.7 - - - -
161A ARG* 3.5 19.6 + - - +
162A ALA* 2.9 24.9 + - - +
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Residues in contact with LYS 159 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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153A ASP* 5.1 2.9 + - - -
155A ASP* 3.0 5.0 + - - +
157A TRP* 3.3 6.6 + - + -
158A GLY* 1.3 76.7 - - - +
160A ASN* 1.3 75.4 + - - +
162A ALA* 3.3 7.6 + - - +
163A ALA* 3.1 22.9 + - - +
319A GLY 5.5 0.2 - - - -
320A ILE* 3.6 27.8 - - + +
323A ALA* 3.8 23.6 + - + +
324A GLN* 4.0 34.8 - - + +
326A TYR 6.0 0.4 + - - -
328A ASP* 2.7 32.3 + - - +
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Residues in contact with ASN 160 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111A ILE* 3.4 41.7 + - + +
112A ARG* 4.3 10.5 - - + +
153A ASP* 2.8 40.0 + - - +
155A ASP* 2.8 29.6 + - + +
159A LYS* 1.3 88.6 - - - +
161A ARG* 1.3 67.1 + - - +
163A ALA* 3.1 9.3 + - - +
164A VAL* 3.0 24.4 + - - +
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Residues in contact with ARG 161 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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112A ARG* 3.6 40.0 - - - +
155A ASP* 2.8 14.6 + - - +
158A GLY* 3.7 18.4 + - - +
159A LYS 3.4 0.2 - - - -
160A ASN* 1.3 77.2 - - - +
162A ALA* 1.4 61.4 + - - +
164A VAL* 3.0 4.4 + - + +
165A VAL* 2.9 32.7 + - + +
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Residues in contact with ALA 162 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158A GLY 2.9 18.4 + - - +
159A LYS* 3.5 7.0 - - - +
160A ASN 3.2 0.2 - - - -
161A ARG* 1.4 75.2 - - - +
163A ALA* 1.3 58.5 + - - +
165A VAL* 4.4 1.1 - - - -
166A ALA* 2.9 30.3 + - - +
316A GLN* 3.4 46.9 - - - +
319A GLY* 5.0 3.1 - - - -
320A ILE* 3.8 9.9 - - + +
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Residues in contact with ALA 163 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108A ALA* 4.6 4.6 - - + +
111A ILE* 4.3 18.8 - - + -
159A LYS 3.1 13.6 + - - +
160A ASN* 3.1 13.4 + - - +
162A ALA* 1.3 78.0 - - - +
164A VAL* 1.3 58.4 + - - +
166A ALA* 3.4 4.8 + - - +
167A ALA* 3.0 27.0 + - - +
320A ILE* 3.7 18.8 - - + +
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Residues in contact with VAL 164 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105A ALA 5.6 1.3 - - - +
108A ALA* 3.6 24.7 - - - +
109A GLY* 3.8 15.9 - - - +
111A ILE* 3.8 1.8 - - + -
112A ARG* 3.5 30.3 - - + +
160A ASN 3.0 12.5 + - - +
161A ARG 3.0 7.4 + - - +
163A ALA* 1.3 77.7 - - - +
165A VAL* 1.3 56.8 + - + +
167A ALA* 3.1 7.5 + - + +
168A THR* 2.9 47.0 + - + +
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Residues in contact with VAL 165 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161A ARG* 2.9 29.9 + - + +
162A ALA* 3.3 6.9 + - - +
164A VAL* 1.3 76.5 - - + +
166A ALA* 1.3 52.9 + - - +
168A THR* 3.0 10.2 + - - +
169A SER* 2.7 44.0 + - - +
312A GLU* 5.0 4.7 - - + -
316A GLN* 3.5 32.5 - - + +
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Residues in contact with ALA 166 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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162A ALA 2.9 17.5 + - - +
163A ALA* 3.5 8.1 - - - +
165A VAL* 1.3 76.6 - - - +
167A ALA* 1.3 58.5 + - - +
169A SER* 3.3 3.1 + - - -
170A GLU* 3.0 33.1 + - - +
313A ALA* 3.6 32.9 - - + +
316A GLN* 3.9 4.4 - - + +
317A GLN* 4.2 18.4 - - + +
320A ILE* 5.1 0.4 - - + -
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Residues in contact with ALA 167 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101A ALA 5.2 0.3 - - - +
104A PHE* 3.9 26.0 - - + -
105A ALA* 4.1 12.1 - - - +
108A ALA* 3.3 33.9 - - + -
163A ALA 3.0 12.5 + - - +
164A VAL* 3.1 4.4 + - + +
166A ALA* 1.3 78.5 - - - +
168A THR* 1.3 58.7 + - + +
170A GLU* 3.3 6.0 + - - +
171A LEU* 2.9 25.1 + - - +
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Residues in contact with THR 168 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105A ALA* 4.9 9.6 - - + +
164A VAL* 2.9 32.3 + - + +
165A VAL* 3.0 19.6 + - - +
167A ALA* 1.3 76.3 - - + +
169A SER* 1.4 59.7 + - - +
171A LEU* 3.3 13.2 + - + +
172A ALA* 2.9 26.5 + - - +
309A TRP* 5.6 0.4 - - - -
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Residues in contact with SER 169 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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165A VAL* 2.7 26.3 + - - +
166A ALA 3.5 4.7 - - - -
168A THR* 1.4 73.9 + - - +
170A GLU* 1.3 61.2 + - - +
172A ALA* 3.2 1.8 + - - +
173A ALA* 3.0 22.7 + - - +
309A TRP* 3.3 58.3 - - - +
312A GLU* 3.8 12.2 - - - +
313A ALA* 3.9 9.6 - - - -
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Residues in contact with GLU 170 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101A ALA* 4.7 3.1 - - + +
104A PHE* 5.2 11.7 - - + -
166A ALA 3.0 19.1 + - - +
167A ALA* 3.5 11.0 - - - +
168A THR 3.3 0.2 - - - -
169A SER* 1.3 72.7 - - - +
171A LEU* 1.3 62.7 + - - +
173A ALA* 3.2 4.5 + - - +
174A ALA* 2.8 28.3 + - - +
310A ARG* 2.8 45.8 + - - +
313A ALA* 3.7 18.3 - - + +
317A GLN* 5.1 6.5 + - - +
379A ARG* 5.0 3.8 + - - -
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Residues in contact with LEU 171 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98A LEU* 4.1 9.2 - - + -
101A ALA* 3.9 11.4 - - + +
102A GLN* 3.7 43.3 - - + +
105A ALA* 4.0 22.0 - - + -
167A ALA 2.9 13.8 + - - +
168A THR* 3.5 13.0 - - + +
169A SER 3.2 0.2 - - - -
170A GLU* 1.3 78.9 - - - +
172A ALA* 1.3 57.0 + - - +
174A ALA* 3.0 3.7 + - - -
175A GLU* 2.8 44.9 + - - +
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Residues in contact with ALA 172 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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168A THR 2.9 13.5 + - - +
169A SER 3.2 2.7 + - - +
171A LEU* 1.3 76.6 - - - +
173A ALA* 1.3 61.8 + - - +
175A GLU* 3.3 16.6 + - - +
176A ALA* 3.1 21.5 + - - +
305A THR* 5.3 0.3 - - - +
309A TRP* 3.5 46.2 + - + +
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Residues in contact with ALA 173 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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169A SER 3.0 13.4 + - - +
170A GLU 3.5 8.5 - - - +
172A ALA* 1.3 78.7 - - - +
174A ALA* 1.3 57.6 + - - +
176A ALA* 3.2 4.2 + - - +
177A GLU* 2.8 33.6 + - - +
306A ALA* 3.5 33.5 - - - +
309A TRP* 3.9 3.1 - - + +
310A ARG* 3.8 27.8 - - + +
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Residues in contact with ALA 174 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97A ARG 4.7 6.1 - - - +
98A LEU* 4.0 12.4 - - + +
101A ALA* 3.4 33.0 - - + -
170A GLU 2.8 11.5 + - - +
171A LEU 3.0 5.8 + - - +
173A ALA* 1.3 73.7 - - - +
175A GLU* 1.3 59.7 + - - +
177A GLU* 3.3 12.3 + - - +
178A SER* 2.9 28.8 + - - -
310A ARG* 4.4 4.2 - - - +
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Residues in contact with GLU 175 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98A LEU* 3.8 20.4 - - + -
102A GLN* 5.4 4.1 + - - +
171A LEU* 2.8 36.2 + - + +
172A ALA* 3.6 17.3 - - - +
173A ALA 3.2 0.2 - - - -
174A ALA* 1.3 76.7 - - - +
176A ALA* 1.3 60.2 + - - +
178A SER* 2.5 25.7 + - - -
179A VAL* 3.3 11.3 + - - +
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Residues in contact with ALA 176 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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172A ALA 3.1 13.2 + - - +
173A ALA 3.2 8.0 + - - +
175A GLU* 1.3 75.4 - - - +
177A GLU* 1.3 59.9 + - - +
179A VAL* 3.1 7.4 + - - +
180A ALA 3.0 21.7 + - - -
302A ALA* 3.1 37.7 - - + +
305A THR* 4.0 14.1 - - + -
306A ALA* 4.0 11.7 - - + +
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Residues in contact with GLU 177 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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173A ALA 2.8 16.9 + - - +
174A ALA* 3.7 9.3 - - - +
175A GLU 3.3 0.4 - - - -
176A ALA* 1.3 75.3 - - - +
178A SER* 1.3 57.7 + - - +
180A ALA* 3.2 10.5 + - + +
181A ALA* 2.8 28.8 + - - +
302A ALA 5.6 0.4 - - - -
303A ASP* 6.2 1.1 - - - -
306A ALA* 3.9 12.1 - - + +
310A ARG* 2.5 44.6 + - - -
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Residues in contact with SER 178 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94A ALA* 4.7 12.0 - - - +
95A MET* 6.2 0.2 - - - -
98A LEU* 3.9 27.5 - - - +
174A ALA 2.9 13.2 + - - -
175A GLU* 2.5 23.5 + - - -
177A GLU* 1.3 76.2 - - - +
179A VAL* 1.3 62.2 + - - +
181A ALA* 3.3 8.9 + - - +
182A ARG* 3.1 21.1 + - - +
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Residues in contact with VAL 179 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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175A GLU 3.6 12.6 - - - +
176A ALA* 3.1 10.2 + - - +
178A SER* 1.3 75.9 + - - +
180A ALA* 1.3 66.6 + - - +
182A ARG* 3.1 10.1 + - + +
183A LEU* 3.0 21.7 + - + +
300A HIS 5.8 1.3 - - - +
302A ALA* 4.2 13.7 - - + -
476A GLY 5.2 8.5 - - - +
479A PHE* 3.9 47.8 - - + +
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Residues in contact with ALA 180 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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176A ALA 3.0 12.4 + - - +
177A GLU* 3.5 15.0 - - + +
179A VAL* 1.3 75.4 - - - +
181A ALA* 1.3 57.1 + - - +
183A LEU* 3.2 10.8 + - - +
184A MET* 2.8 29.7 + - - +
302A ALA* 3.9 13.2 - - + +
303A ASP* 4.9 10.5 - - + +
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Residues in contact with ALA 181 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94A ALA* 3.5 31.9 - - + -
97A ARG* 4.5 9.9 - - - +
177A GLU 2.8 13.0 + - - +
178A SER* 3.5 8.1 - - - +
179A VAL 3.1 0.2 - - - -
180A ALA* 1.3 72.3 - - - +
182A ARG* 1.3 66.8 + - - +
184A MET* 3.2 17.1 + - + +
185A ILE* 3.0 33.0 + - + +
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Residues in contact with ARG 182 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66A ALA* 2.8 27.1 + - - +
67A ASN* 3.0 23.2 + - - -
68A TRP* 5.0 2.8 - - - +
69A TRP* 3.7 20.9 - - - -
85A LEU* 3.8 31.4 - - + +
91A LEU* 6.5 0.4 - - - -
178A SER 3.1 13.5 + - - +
179A VAL* 3.1 11.2 + - - +
181A ALA* 1.3 76.1 - - - +
183A LEU* 1.3 57.1 + - - +
185A ILE* 3.3 6.7 + - - +
186A SER* 3.0 29.9 + - - +
479A PHE* 3.6 44.4 - - - +
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Residues in contact with LEU 183 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68A TRP* 4.1 15.9 - - + +
179A VAL* 3.0 13.0 + - + +
180A ALA* 3.4 13.9 - - - +
182A ARG* 1.3 77.0 - - - +
184A MET* 1.3 52.1 + - - +
186A SER* 3.6 2.7 - - - -
187A THR* 2.7 62.7 + - + +
472A ILE* 4.6 3.1 - - + -
473A HIS* 3.8 45.3 - - + +
476A GLY* 4.0 22.0 - - - +
477A GLY* 3.9 20.9 - - - +
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Residues in contact with MET 184 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90A SER* 6.0 3.8 - - - +
97A ARG* 5.2 9.4 - - - +
180A ALA 2.8 15.2 + - - +
181A ALA* 3.2 20.1 + - + +
183A LEU* 1.3 75.3 - - - +
185A ILE* 1.3 62.4 - - + +
187A THR* 3.7 5.9 + - - -
188A SER* 3.0 34.0 + - - -
473A HIS* 5.6 4.9 - - - +
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Residues in contact with ILE 185 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84A ALA* 3.9 25.6 - - + +
85A LEU* 3.8 25.8 - - + -
88A SER* 5.1 1.8 - - - +
90A SER* 3.9 21.3 - - - +
91A LEU* 3.7 35.4 - - + +
94A ALA* 5.3 0.7 - - + -
181A ALA* 3.0 25.1 + - + +
182A ARG* 3.6 6.7 - - - +
184A MET* 1.3 80.1 - - + +
186A SER* 1.3 65.5 + - - +
188A SER* 2.9 19.8 + - - -
189A ILE* 3.2 15.1 + - + +
265A LEU 5.0 4.0 - - - +
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Residues in contact with SER 186 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68A TRP* 3.2 27.1 + - - -
69A TRP* 3.9 21.0 - - - -
81A ILE* 3.8 21.6 - - - +
85A LEU* 4.8 3.4 - - - -
182A ARG* 3.0 18.8 + - - +
183A LEU* 3.2 9.2 + - - -
185A ILE* 1.3 78.4 - - - +
187A THR* 1.3 58.9 + - - +
189A ILE* 3.4 2.3 + - - +
190A ALA* 2.9 27.5 + - - +
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Residues in contact with THR 187 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68A TRP* 3.7 18.8 - - + -
183A LEU* 2.7 48.2 + - + +
184A MET* 3.7 5.0 + - - -
186A SER* 1.3 73.7 + - - +
188A SER* 1.3 62.6 + - - +
190A ALA* 3.9 1.7 - - - +
191A ASN* 2.9 45.5 + - - -
469A LEU* 5.1 4.3 - - + +
472A ILE* 4.9 1.1 - - + -
473A HIS* 3.5 36.3 - - + +
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Residues in contact with SER 188 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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184A MET* 3.0 21.7 + - - -
185A ILE* 2.9 19.1 + - - -
187A THR* 1.3 77.3 + - - +
189A ILE* 1.3 55.5 + - - +
191A ASN* 3.9 4.9 - - - +
192A ALA* 3.0 28.8 + - - +
265A LEU* 3.8 26.4 + - - +
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Residues in contact with ILE 189 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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77A LEU* 4.3 5.8 - - + -
80A LEU* 4.1 21.5 - - + +
81A ILE* 3.6 24.7 - - + -
84A ALA* 3.4 33.7 - - + -
185A ILE* 3.2 22.8 + - + +
186A SER* 3.7 4.0 - - - +
188A SER* 1.3 79.5 + - - +
190A ALA* 1.3 59.7 + - - +
192A ALA* 3.2 3.5 + - - +
193A TYR* 2.9 27.4 + - - +
262A LEU* 3.7 11.4 - - + +
265A LEU* 3.9 29.4 - - + +
266A VAL* 3.7 10.3 - - + -
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Residues in contact with ALA 190 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68A TRP* 3.9 12.3 - - + -
77A LEU* 4.2 12.6 - - + -
81A ILE* 4.6 5.6 - - + -
186A SER 2.9 18.3 + - - +
187A THR* 3.9 3.4 - - - +
189A ILE* 1.3 75.8 - - - +
191A ASN* 1.3 58.4 + - - +
193A TYR* 3.2 8.4 + - - +
194A ALA 2.8 24.6 + - - -
465A PHE* 4.3 2.1 - - + -
469A LEU* 3.4 37.4 - - + +
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Residues in contact with ASN 191 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187A THR* 2.9 37.2 + - - +
188A SER* 4.0 5.5 - - - +
190A ALA* 1.3 71.3 - - - +
192A ALA* 1.3 65.6 + - - +
194A ALA* 3.3 5.2 + - - +
195A GLU* 3.1 21.0 + - - +
466A SER* 4.5 12.1 + - - +
469A LEU* 3.6 28.1 + - - +
470A ALA* 5.3 0.7 + - - +
473A HIS* 5.9 3.2 - - - +
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Residues in contact with ALA 192 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A SER 3.0 17.7 + - - +
189A ILE 3.2 3.6 + - - +
191A ASN* 1.3 75.2 - - - +
193A TYR* 1.3 57.3 + - - +
195A GLU* 3.2 1.8 + - - -
196A LEU* 2.9 23.0 + - - +
258A GLN* 3.0 28.7 - - - +
261A ALA* 5.5 2.0 - - + -
262A LEU* 3.7 14.8 - - + +
265A LEU* 3.6 23.6 - - + -
----------------------------------------------------------
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Residues in contact with TYR 193 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74A ASP* 2.7 37.1 + - - -
76A GLN* 2.9 30.2 + - + +
77A LEU* 3.8 27.1 - - + -
80A LEU* 3.8 29.2 - - + -
189A ILE 2.9 14.0 + - - +
190A ALA 3.2 10.3 + - - +
192A ALA* 1.3 74.3 - - - +
194A ALA* 1.3 57.8 + - - +
196A LEU* 3.1 12.8 + - + +
197A ALA* 2.9 29.6 + - - +
262A LEU* 3.9 11.8 - - + +
276A ILE* 5.2 0.4 - - + -
279A PRO* 3.4 27.0 - - + +
281A ILE* 3.8 20.4 - - + -
465A PHE* 4.6 1.6 - + - -
----------------------------------------------------------
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Residues in contact with ALA 194 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190A ALA 2.8 13.9 + - - +
191A ASN* 3.3 12.1 + - - +
193A TYR* 1.3 74.3 - - - +
195A GLU* 1.3 58.2 + - - +
197A ALA* 3.3 4.3 + - - +
198A ARG* 3.0 26.3 + - - +
462A SER* 3.7 8.2 + - - +
465A PHE* 3.6 30.1 - - + -
466A SER* 3.8 20.4 - - - +
469A LEU* 4.1 8.1 - - + -
----------------------------------------------------------
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Residues in contact with GLU 195 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
191A ASN 3.1 9.5 + - - +
192A ALA* 3.4 8.7 - - - +
193A TYR 3.2 0.2 - - - -
194A ALA* 1.3 77.3 - - - +
196A LEU* 1.3 59.9 + - - +
198A ARG* 2.8 47.1 + - - +
199A LEU* 2.8 41.4 + - + +
258A GLN* 3.5 26.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU 196 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192A ALA 2.9 14.0 + - - +
193A TYR* 3.1 13.9 + - + +
195A GLU* 1.3 76.5 - - - +
197A ALA* 1.3 62.0 + - - +
199A LEU* 3.2 5.6 + - - +
200A TYR* 3.0 44.5 + - + -
255A ILE* 3.8 27.1 - - + +
258A GLN* 3.9 17.0 - - + +
259A LYS* 4.1 7.6 - - + +
262A LEU* 3.6 22.0 - - + -
276A ILE* 3.7 22.4 - - + -
277A GLU 4.1 5.6 - - - +
279A PRO* 4.0 14.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA 197 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
193A TYR 2.9 12.4 + - - +
194A ALA* 3.6 11.2 - - - +
196A LEU* 1.3 76.3 - - - +
198A ARG* 1.3 57.1 + - - +
200A TYR* 3.3 3.0 + - - +
201A ALA* 2.9 29.8 + - - +
279A PRO* 3.8 27.7 - - + +
281A ILE* 5.1 10.1 - - + -
462A SER* 5.7 0.9 - - - +
465A PHE* 5.3 3.6 - - + -
----------------------------------------------------------
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Residues in contact with ARG 198 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194A ALA 3.0 8.5 + - - +
195A GLU* 2.8 47.9 + - - +
197A ALA* 1.3 76.2 - - - +
199A LEU* 1.3 76.3 + - - +
201A ALA* 3.3 6.0 + - - +
202A ASN* 2.9 47.8 + - - +
455A ARG* 5.9 1.0 - - - +
458A VAL 4.8 0.9 - - - +
459A ASN* 2.9 45.7 + - - +
462A SER* 3.4 35.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 199 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
195A GLU* 2.8 35.4 + - + +
196A LEU* 3.2 5.4 + - - +
198A ARG* 1.3 96.3 - - - +
200A TYR* 1.3 54.8 + - - +
202A ASN* 3.2 5.0 + - + +
203A GLN* 2.8 34.3 + - - +
251A ILE* 3.5 18.4 - - + +
254A SER* 3.7 45.8 - - - +
255A ILE* 3.6 16.4 - - + +
258A GLN* 4.0 17.7 - - + +
----------------------------------------------------------
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Residues in contact with TYR 200 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196A LEU* 3.0 37.5 + - + -
197A ALA* 3.7 8.7 - - - +
199A LEU* 1.3 74.3 - - - +
201A ALA* 1.3 57.3 + - - +
203A GLN* 3.2 25.1 + - - +
204A GLU* 3.0 27.7 + - - +
255A ILE* 3.8 26.4 - - + +
259A LYS* 2.9 30.6 + - - -
277A GLU* 3.9 1.6 - - - -
278A GLU* 3.6 60.7 + - + +
279A PRO* 3.7 10.5 - - + -
----------------------------------------------------------
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Residues in contact with ALA 201 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197A ALA 2.9 17.8 + - - +
198A ARG* 3.6 4.0 - - - +
199A LEU 3.2 0.2 - - - -
200A TYR* 1.3 76.2 - - - +
202A ASN* 1.3 59.9 + - - +
204A GLU* 3.2 8.1 + - - +
205A THR* 3.0 27.5 + - - -
458A VAL* 3.3 30.9 - - + +
462A SER* 6.4 0.2 - - - -
----------------------------------------------------------
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Residues in contact with ASN 202 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198A ARG* 2.9 39.9 + - - +
199A LEU* 3.6 8.3 - - + +
201A ALA* 1.3 71.9 - - - +
203A GLN* 1.3 59.6 + - - +
205A THR* 3.4 5.1 + - - -
206A VAL* 2.9 35.3 + - - +
251A ILE* 4.1 17.3 - - + -
455A ARG* 2.9 40.0 + - - +
458A VAL* 3.3 10.5 - - - +
459A ASN* 3.0 30.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 203 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
199A LEU 2.8 18.4 + - - +
200A TYR* 3.2 32.4 + - - +
202A ASN* 1.3 73.2 - - - +
204A GLU* 1.3 63.8 + - - +
207A HIS* 2.9 32.1 + - + +
248A LEU* 3.9 17.8 - - + +
251A ILE* 3.9 9.8 - - + +
252A GLN* 3.1 37.8 - - + +
255A ILE* 3.8 17.1 - - + +
----------------------------------------------------------
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Residues in contact with GLU 204 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200A TYR 3.0 13.7 + - - +
201A ALA* 3.2 10.2 + - - +
203A GLN* 1.3 76.7 - - - +
205A THR* 1.3 57.7 + - - +
207A HIS* 3.9 4.5 + - - +
208A ALA* 2.9 33.1 + - + +
278A GLU* 4.5 13.3 - - - +
----------------------------------------------------------
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Residues in contact with THR 205 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A ALA 3.0 16.5 + - - -
202A ASN* 3.7 7.4 - - - -
204A GLU* 1.3 78.8 - - - +
206A VAL* 1.3 57.8 + - - +
208A ALA* 3.8 4.7 - - - +
209A ALA* 3.0 27.5 + - - +
451A LEU* 4.0 11.0 - - + -
454A GLN* 3.7 41.2 - - + +
455A ARG* 4.0 10.5 - - + -
458A VAL* 3.6 17.7 - - - +
----------------------------------------------------------
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Residues in contact with VAL 206 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A ASN 2.9 20.8 + - - +
203A GLN 4.2 1.3 - - - +
205A THR* 1.3 73.8 - - - +
207A HIS* 1.3 61.1 + - - +
209A ALA* 3.3 6.6 + - - +
210A LEU* 2.8 28.3 + - - +
244A VAL* 3.6 31.5 - - + +
247A GLU* 4.4 4.5 - - + -
248A LEU* 3.8 21.8 - - + +
251A ILE* 3.7 13.0 - - + -
451A LEU* 4.4 6.7 - - + -
455A ARG* 3.7 37.5 - - - +
----------------------------------------------------------
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Residues in contact with HIS 207 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203A GLN* 2.9 23.1 + - + +
204A GLU* 3.9 4.9 + - - +
206A VAL* 1.3 77.5 - - - +
208A ALA* 1.3 64.2 + - - +
210A LEU* 3.1 3.3 + - + +
211A GLN* 3.0 62.4 + - + +
248A LEU* 4.1 30.1 - - + +
252A GLN* 5.6 4.0 - - - -
----------------------------------------------------------
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Residues in contact with ALA 208 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A GLU* 2.9 20.1 + - + +
205A THR* 3.8 4.9 - - - +
207A HIS* 1.3 76.2 + - - +
209A ALA* 1.3 66.2 + - - +
211A GLN* 3.2 17.2 + - - +
212A VAL* 3.3 17.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 209 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205A THR 3.0 18.6 + - - +
206A VAL 3.3 4.5 + - - +
208A ALA* 1.3 76.2 - - - +
210A LEU* 1.3 57.4 + - - +
212A VAL* 3.1 4.7 + - - -
213A ARG* 2.9 59.0 + - - +
244A VAL* 4.5 1.8 - - + -
451A LEU* 3.9 25.8 - - + -
454A GLN* 5.2 4.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU 210 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206A VAL 2.8 17.2 + - - +
207A HIS* 3.1 10.5 + - + +
209A ALA* 1.3 72.4 - - - +
211A GLN* 1.3 72.3 + - - +
213A ARG* 3.3 2.3 + - - -
214A ASN* 3.0 46.1 + - - +
241A ALA* 3.5 28.0 - - - +
244A VAL* 3.9 12.5 - - + +
245A GLU* 3.8 40.4 - - + +
248A LEU* 3.8 20.9 - - + -
----------------------------------------------------------
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Residues in contact with GLN 211 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A HIS* 3.0 60.9 + - + +
208A ALA* 3.6 9.4 - - - +
209A ALA 3.2 0.4 - - - -
210A LEU* 1.3 90.6 - - - +
212A VAL* 1.3 59.8 + - + +
214A ASN* 3.5 12.5 + - - +
215A LYS* 3.0 31.7 + - - +
----------------------------------------------------------
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Residues in contact with VAL 212 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
208A ALA 3.5 12.6 - - - +
209A ALA* 3.1 8.4 + - - +
211A GLN* 1.3 76.5 - - + +
213A ARG* 1.3 76.7 + - - +
215A LYS* 3.0 10.5 + - + +
216A THR* 2.8 32.7 + - - +
426A LEU* 5.2 10.3 - - + -
447A GLU* 3.8 14.6 - - + +
----------------------------------------------------------
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Residues in contact with ARG 213 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209A ALA* 2.9 54.1 + - - +
210A LEU* 3.7 8.5 - - - +
212A VAL* 1.3 92.5 - - - +
214A ASN* 1.3 57.0 + - - +
216A THR* 3.3 7.7 + - - -
217A VAL* 3.1 30.7 + - - +
237A ALA* 4.7 1.5 - - - +
240A VAL* 3.7 18.7 - - + +
241A ALA* 3.9 20.6 - - + +
244A VAL* 4.0 22.9 - - + +
426A LEU* 5.8 1.4 - - - +
447A GLU* 3.1 59.5 + - - +
448A GLU* 5.0 0.6 - - - +
450A LEU* 5.7 3.2 - - - +
451A LEU* 3.8 19.3 - - - +
----------------------------------------------------------
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Residues in contact with ASN 214 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
210A LEU* 3.0 38.3 + - - +
211A GLN* 3.7 14.1 + - - +
213A ARG* 1.3 73.9 - - - +
215A LYS* 1.3 63.8 + - - +
217A VAL* 3.3 9.1 + - - +
218A GLU* 3.1 30.1 + - - +
241A ALA* 3.7 19.2 - - - +
245A GLU* 5.2 4.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 215 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211A GLN* 3.0 18.0 + - + +
212A VAL* 3.0 13.2 + - + +
214A ASN* 1.3 76.3 - - + +
216A THR* 1.3 58.0 + - - +
218A GLU* 3.5 29.5 + - + +
219A LEU* 3.1 27.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 216 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212A VAL* 2.8 16.2 + - - +
213A ARG* 3.5 10.1 - - - -
214A ASN 3.2 0.2 - - - -
215A LYS* 1.3 75.6 - - - +
217A VAL* 1.3 65.5 + - - +
219A LEU* 3.5 6.6 + - + +
220A LEU* 2.9 34.5 + - + +
237A ALA* 4.8 3.8 - - + -
430A THR* 6.1 0.5 - - - +
440A TYR* 3.9 27.8 - - + +
443A VAL* 4.6 8.3 - - + +
447A GLU* 3.1 24.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL 217 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213A ARG 3.1 17.1 + - - +
214A ASN* 3.5 10.8 - - - +
216A THR* 1.3 76.3 - - - +
218A GLU* 1.3 59.5 + - + +
220A LEU* 3.1 4.8 + - - +
221A GLU* 2.8 48.2 + - + +
234A VAL* 5.4 1.5 - - + +
237A ALA* 3.4 40.8 - - + +
238A LYS* 3.8 31.6 - - + +
241A ALA* 4.3 8.5 - - + -
----------------------------------------------------------
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Residues in contact with GLU 218 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214A ASN* 3.1 17.2 + - - +
215A LYS* 3.6 38.1 + - + +
216A THR 3.2 0.2 - - - -
217A VAL* 1.3 79.5 - - + +
219A LEU* 1.3 66.9 + - - +
221A GLU* 3.9 11.1 - - - +
222A LYS* 3.2 23.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 219 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215A LYS 3.1 17.6 + - - +
216A THR* 3.8 7.0 - - + +
217A VAL 3.3 0.2 - - - -
218A GLU* 1.3 79.1 - - - +
220A LEU* 1.3 59.2 + - + +
222A LYS* 3.3 27.5 + - - +
223A ARG* 2.9 40.4 + - + +
433A TYR* 3.9 27.8 - - + -
434A GLN* 4.1 31.4 - - + +
----------------------------------------------------------
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Residues in contact with LEU 220 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216A THR* 2.9 35.3 + - + +
217A VAL* 3.6 4.0 - - - +
219A LEU* 1.3 81.2 - - + +
221A GLU* 1.3 58.0 + - - +
223A ARG* 3.7 6.3 - - - +
224A TYR* 2.8 30.0 + - - +
229A GLU* 4.1 5.7 - - + +
233A SER* 3.6 28.5 - - - +
234A VAL* 3.6 12.9 - - + +
237A ALA* 3.9 8.5 - - + -
433A TYR* 3.4 37.9 - - + +
440A TYR* 3.4 34.8 - - + -
----------------------------------------------------------
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Residues in contact with GLU 221 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217A VAL* 2.8 27.3 + - - +
218A GLU* 3.9 11.2 - - - +
219A LEU 3.2 0.2 - - - -
220A LEU* 1.3 74.9 - - - +
222A LYS* 1.3 60.3 + - - +
224A TYR* 3.5 9.9 + - + +
225A ALA* 2.9 29.8 + - - +
234A VAL* 3.8 20.0 - - + +
238A LYS* 3.1 32.0 + - - -
----------------------------------------------------------
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Residues in contact with LYS 222 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218A GLU 3.2 14.6 + - - +
219A LEU* 3.5 27.8 - - + +
221A GLU* 1.3 76.3 - - - +
223A ARG* 1.3 68.9 + - - +
225A ALA* 3.3 7.8 + - - +
226A ASN* 3.1 39.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 223 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
219A LEU* 2.9 33.1 + - + +
220A LEU 3.7 4.7 - - - +
222A LYS* 1.3 78.4 - - + +
224A TYR* 1.3 64.3 + - - +
226A ASN* 3.0 12.1 + - - +
228A LEU* 2.9 66.4 + - + +
229A GLU* 3.8 9.6 + - + -
433A TYR* 3.0 69.8 + - - -
434A GLN* 4.5 7.5 + - - +
436A GLY* 4.4 15.6 - - - +
438A ALA 5.8 0.6 + - - -
----------------------------------------------------------
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Residues in contact with TYR 224 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220A LEU 2.8 22.8 + - - +
221A GLU* 3.8 7.2 - - + +
223A ARG* 1.3 72.0 - - - +
225A ALA* 1.3 66.5 + - + +
227A GLY* 3.0 13.7 + - - -
229A GLU* 3.1 30.7 - - - +
230A THR* 3.6 9.4 - - - +
231A LEU* 3.5 48.3 - - + +
234A VAL* 3.6 20.9 - - + -
----------------------------------------------------------
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Residues in contact with ALA 225 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221A GLU 2.9 18.8 + - - +
222A LYS* 3.4 9.6 - - - +
223A ARG 3.2 0.2 - - - -
224A TYR* 1.3 81.6 - - + +
226A ASN* 1.3 63.1 + - - +
227A GLY 3.3 2.5 + - - -
----------------------------------------------------------
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Residues in contact with ASN 226 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
222A LYS* 3.1 33.2 + - - +
223A ARG* 3.0 6.8 + - - +
225A ALA* 1.3 80.6 - - - +
227A GLY* 1.3 61.9 + - - +
228A LEU* 3.2 26.3 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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