Contacts of the helix formed by residues 230 - 266 (chain A) in PDB entry 1YC9


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with THR 230 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    224A  TYR*     3.6     4.0    -      -       -      -
    229A  GLU*     1.3    92.6    +      -       -      +
    231A  LEU*     1.3    72.4    +      -       -      +
    232A  GLY*     2.9    12.2    +      -       -      -
    233A  SER*     3.1    20.2    -      -       -      +
    234A  VAL*     3.3    24.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 231 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    224A  TYR*     3.5    42.5    -      -       +      +
    230A  THR*     1.3    76.6    +      -       -      +
    232A  GLY*     1.3    52.7    +      -       -      +
    234A  VAL*     3.2    15.4    +      -       +      +
    235A  SER*     2.8    50.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 232 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    230A  THR*     2.9    10.7    +      -       -      -
    231A  LEU*     1.3    78.5    -      -       -      +
    233A  SER*     1.3    54.8    +      -       -      +
    235A  SER*     3.3     6.0    +      -       -      -
    236A  GLN*     2.9    30.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 233 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    220A  LEU*     3.6    12.3    -      -       -      +
    229A  GLU*     2.7    39.5    +      -       -      -
    230A  THR*     3.1    13.6    +      -       -      +
    231A  LEU      3.3     0.2    -      -       -      -
    232A  GLY*     1.3    71.3    -      -       -      +
    234A  VAL*     1.3    66.2    +      -       -      +
    236A  GLN*     3.3     3.9    +      -       -      +
    237A  ALA*     3.0    24.8    +      -       -      +
    440A  TYR*     3.8    22.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 234 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    217A  VAL*     5.1     1.7    -      -       +      +
    220A  LEU*     3.6    25.8    -      -       +      +
    221A  GLU*     3.8    15.0    -      -       +      +
    224A  TYR*     3.6    30.1    -      -       +      -
    229A  GLU*     4.7     1.1    -      -       +      -
    230A  THR      3.3    15.7    +      -       -      +
    231A  LEU*     3.2    20.1    +      -       +      +
    233A  SER*     1.3    74.9    -      -       -      +
    235A  SER*     1.3    58.7    +      -       -      +
    237A  ALA*     3.3     3.9    +      -       -      +
    238A  LYS*     3.0    53.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 235 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    231A  LEU*     2.8    32.9    +      -       -      +
    232A  GLY*     3.7     6.5    -      -       -      -
    233A  SER      3.2     0.2    -      -       -      -
    234A  VAL*     1.3    77.3    -      -       -      +
    236A  GLN*     1.3    58.2    +      -       -      +
    238A  LYS*     3.3    10.5    +      -       -      +
    239A  ALA*     2.9    28.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 236 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    232A  GLY      2.9    17.3    +      -       -      +
    233A  SER*     3.6     5.6    -      -       -      +
    235A  SER*     1.3    77.6    -      -       -      +
    237A  ALA*     1.3    56.0    +      -       -      +
    239A  ALA*     3.1    15.4    +      -       -      +
    240A  VAL*     2.8    37.1    +      -       -      +
    440A  TYR*     3.9     7.6    -      -       +      -
    444A  LEU*     3.6    27.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 237 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    213A  ARG*     4.7     2.1    -      -       -      +
    216A  THR*     4.8     2.9    -      -       +      -
    217A  VAL*     3.4    28.1    -      -       +      +
    220A  LEU*     3.9    13.2    -      -       +      -
    233A  SER      3.0    16.6    +      -       -      +
    234A  VAL*     3.6     4.5    -      -       -      +
    236A  GLN*     1.3    75.6    -      -       -      +
    238A  LYS*     1.3    59.0    +      -       -      +
    240A  VAL*     3.5     4.1    +      -       -      +
    241A  ALA*     3.0    22.9    +      -       -      +
    440A  TYR*     3.2    26.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 238 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    217A  VAL*     3.8    24.7    -      -       +      +
    221A  GLU*     3.1    38.4    +      -       -      -
    234A  VAL*     3.0    34.2    +      -       +      +
    235A  SER*     3.7     9.0    -      -       -      +
    236A  GLN      3.3     0.2    -      -       -      -
    237A  ALA*     1.3    75.2    -      -       -      +
    239A  ALA*     1.3    57.9    +      -       -      +
    241A  ALA*     3.3     3.1    +      -       -      +
    242A  ALA*     3.0    30.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 239 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    235A  SER      2.9    13.4    +      -       -      +
    236A  GLN*     3.3    22.0    -      -       -      +
    238A  LYS*     1.3    71.6    -      -       -      +
    240A  VAL*     1.3    66.2    +      -       -      +
    242A  ALA*     3.3     6.5    +      -       -      +
    243A  SER*     2.9    25.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 240 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    213A  ARG*     3.7    31.4    -      -       +      +
    236A  GLN*     2.8    21.9    +      -       +      +
    237A  ALA*     3.6     9.0    -      -       -      +
    239A  ALA*     1.3    76.1    -      -       -      +
    241A  ALA*     1.3    57.1    +      -       -      +
    243A  SER*     3.3     6.7    +      -       -      -
    244A  VAL*     2.9    37.6    +      -       +      +
    440A  TYR*     4.0    13.0    -      -       -      +
    444A  LEU*     4.0    19.7    -      -       +      -
    447A  GLU*     4.5     7.0    -      -       +      +
    448A  GLU*     5.7     6.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 241 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    210A  LEU*     3.5    10.7    -      -       +      +
    213A  ARG*     3.9    21.8    -      -       +      -
    214A  ASN*     3.7    22.9    -      -       -      +
    217A  VAL*     4.3    11.4    -      -       +      -
    237A  ALA      3.0    16.8    +      -       -      +
    238A  LYS*     3.8     4.3    -      -       -      +
    239A  ALA      3.3     0.2    -      -       -      -
    240A  VAL*     1.3    76.3    -      -       -      +
    242A  ALA*     1.3    57.3    +      -       -      +
    244A  VAL      3.4     0.3    +      -       -      -
    245A  GLU*     2.9    25.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 242 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    238A  LYS      3.0    17.5    +      -       -      +
    239A  ALA*     3.7     5.4    -      -       -      +
    241A  ALA*     1.3    75.5    -      -       -      +
    243A  SER*     1.3    59.1    +      -       -      +
    245A  GLU*     3.3     8.0    +      -       -      +
    246A  ALA*     2.8    29.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 243 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    239A  ALA      2.9    17.0    +      -       -      -
    240A  VAL*     3.4     7.4    -      -       -      -
    242A  ALA*     1.3    78.4    -      -       -      +
    244A  VAL*     1.3    57.2    +      -       -      +
    246A  ALA*     3.3     7.8    +      -       -      +
    247A  GLU*     3.0    27.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 244 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    206A  VAL*     3.6    33.3    -      -       +      +
    209A  ALA*     4.5     7.0    -      -       +      -
    210A  LEU*     3.9    17.7    -      -       +      +
    213A  ARG*     4.0    19.5    -      -       +      +
    240A  VAL*     2.9    26.6    +      -       +      +
    241A  ALA      3.9     3.8    -      -       -      +
    243A  SER*     1.3    74.4    -      -       -      +
    245A  GLU*     1.3    58.1    +      -       -      +
    247A  GLU*     3.2     8.1    +      -       -      +
    248A  LEU*     3.0    23.4    +      -       -      +
    451A  LEU*     4.3    19.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 245 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    210A  LEU*     3.8    33.3    -      -       +      +
    214A  ASN*     5.2     3.8    +      -       -      +
    241A  ALA      2.9    17.4    +      -       -      +
    242A  ALA*     3.6     6.9    -      -       -      +
    244A  VAL*     1.3    78.6    -      -       -      +
    246A  ALA*     1.3    56.9    +      -       -      +
    248A  LEU*     3.2     7.4    +      -       +      +
    249A  LEU*     3.0    43.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 246 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    242A  ALA      2.8    20.2    +      -       -      +
    243A  SER*     3.3     9.6    +      -       -      +
    245A  GLU*     1.3    71.6    -      -       -      +
    247A  GLU*     1.3    62.6    +      -       -      +
    249A  LEU*     3.2    12.7    +      -       -      +
    250A  GLY*     3.1    19.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 247 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    206A  VAL*     4.4     6.1    -      -       +      -
    243A  SER      3.0    13.8    +      -       -      +
    244A  VAL*     3.4    12.1    -      -       -      +
    245A  GLU      3.2     0.2    -      -       -      -
    246A  ALA*     1.3    75.8    -      -       -      +
    248A  LEU*     1.3    56.9    +      -       -      +
    250A  GLY*     3.2     3.8    +      -       -      -
    251A  ILE*     2.9    35.8    +      -       +      +
    451A  LEU*     6.5     0.9    -      -       +      -
    455A  ARG*     2.6    45.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 248 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    203A  GLN*     3.9    43.1    -      -       +      +
    206A  VAL*     3.8    12.0    -      -       +      +
    207A  HIS*     4.1    29.8    -      -       +      +
    210A  LEU*     3.8    25.6    -      -       +      -
    244A  VAL      3.0    12.9    +      -       -      +
    245A  GLU*     3.2    13.2    +      -       +      +
    247A  GLU*     1.3    74.8    -      -       -      +
    249A  LEU*     1.3    59.3    +      -       +      +
    251A  ILE*     3.3     4.8    +      -       +      +
    252A  GLN*     2.9    51.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 249 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    245A  GLU*     3.0    33.1    +      -       +      +
    246A  ALA*     3.2    12.5    +      -       -      +
    248A  LEU*     1.3    77.3    -      -       +      +
    250A  GLY*     1.3    58.4    +      -       -      +
    252A  GLN*     3.3    20.4    +      -       +      +
    253A  GLU*     2.9    29.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 250 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    246A  ALA      3.1    12.8    +      -       -      -
    247A  GLU*     3.2     4.2    +      -       -      -
    249A  LEU*     1.3    75.1    -      -       -      +
    251A  ILE*     1.3    63.0    +      -       -      +
    253A  GLU*     3.3    11.5    +      -       -      +
    254A  SER*     3.0    26.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 251 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    199A  LEU*     3.5    35.0    -      -       +      +
    202A  ASN*     4.0    12.3    -      -       +      +
    203A  GLN*     3.9    16.6    -      -       +      +
    206A  VAL*     3.7    34.1    -      -       +      -
    247A  GLU*     2.9    22.1    +      -       +      +
    248A  LEU*     3.3     7.2    +      -       -      +
    250A  GLY*     1.3    74.5    -      -       -      +
    252A  GLN*     1.3    56.8    -      -       -      +
    254A  SER*     3.2     7.7    +      -       -      -
    255A  ILE*     2.8    30.2    +      -       +      +
    455A  ARG*     3.7    20.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 252 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    203A  GLN*     3.1    33.1    -      -       +      +
    207A  HIS*     5.6     3.6    -      -       -      -
    248A  LEU*     2.9    39.6    +      -       +      +
    249A  LEU*     3.3    27.3    +      -       +      +
    251A  ILE*     1.3    74.3    -      -       -      +
    253A  GLU*     1.3    64.1    +      -       -      +
    255A  ILE*     3.3     9.6    +      -       -      +
    256A  GLN*     3.2    21.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 253 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    249A  LEU      2.9    13.8    +      -       -      +
    250A  GLY*     3.5    13.2    -      -       -      +
    251A  ILE      3.3     0.2    -      -       -      -
    252A  GLN*     1.3    75.8    -      -       -      +
    254A  SER*     1.3    57.2    +      -       -      +
    256A  GLN*     3.0     8.5    +      -       +      +
    257A  LEU*     2.9    48.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 254 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    199A  LEU*     3.7    25.9    -      -       -      +
    250A  GLY      3.0    15.0    +      -       -      -
    251A  ILE*     3.2    10.1    +      -       -      -
    253A  GLU*     1.3    74.6    -      -       -      +
    255A  ILE*     1.3    57.5    +      -       -      +
    257A  LEU*     3.3    13.9    +      -       -      +
    258A  GLN*     2.8    33.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 255 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    196A  LEU*     3.8     3.2    -      -       +      +
    199A  LEU*     3.6    41.1    -      -       +      +
    200A  TYR*     3.8    34.3    -      -       +      +
    203A  GLN*     3.8    38.8    -      -       +      +
    251A  ILE*     2.8    22.4    +      -       +      +
    252A  GLN*     3.5     9.4    -      -       -      +
    253A  GLU      3.2     0.4    -      -       -      -
    254A  SER*     1.3    71.8    -      -       -      +
    256A  GLN*     1.3    59.2    +      -       -      +
    258A  GLN*     3.2     4.1    +      -       -      +
    259A  LYS*     2.9    43.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 256 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    252A  GLN      3.2     8.5    +      -       -      +
    253A  GLU*     3.0    10.7    +      -       -      +
    255A  ILE*     1.3    79.7    -      -       +      +
    257A  LEU*     1.3    59.8    +      -       +      +
    259A  LYS*     3.2    25.9    +      -       -      +
    260A  ASN*     3.0    54.5    +      -       -      +
    273A  ALA*     4.2     8.8    +      -       -      +
    274A  ALA*     5.8     1.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 257 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    253A  GLU*     2.9    42.5    +      -       +      +
    254A  SER*     3.6    14.1    -      -       -      +
    256A  GLN*     1.3    75.7    -      -       +      +
    258A  GLN*     1.3    60.1    +      -       -      +
    260A  ASN*     3.3    19.9    +      -       +      +
    261A  ALA*     3.0    26.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 258 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    192A  ALA*     3.0    42.8    -      -       -      +
    195A  GLU*     3.5    23.2    -      -       -      +
    196A  LEU*     3.9    20.9    -      -       +      +
    199A  LEU*     4.0    10.9    -      -       +      +
    254A  SER      2.8    20.1    +      -       -      +
    255A  ILE      3.5     4.9    -      -       -      +
    257A  LEU*     1.3    76.6    -      -       -      +
    259A  LYS*     1.3    57.0    +      -       -      +
    261A  ALA*     3.2    10.6    +      -       -      +
    262A  LEU*     3.0    29.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 259 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    196A  LEU*     4.1     5.4    -      -       +      -
    200A  TYR*     2.9    30.8    +      -       -      -
    255A  ILE*     2.9    29.9    +      -       +      +
    256A  GLN*     3.2    26.3    +      -       -      +
    258A  GLN*     1.3    73.9    -      -       -      +
    260A  ASN*     1.3    66.6    +      -       -      +
    262A  LEU*     3.4     2.3    +      -       -      -
    263A  ALA      3.0    18.9    +      -       -      -
    273A  ALA*     3.4    34.6    +      -       +      +
    276A  ILE*     3.0    48.0    +      -       +      +
    277A  GLU*     4.8     0.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 260 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    256A  GLN*     3.0    43.2    +      -       -      +
    257A  LEU*     3.4    25.1    -      -       +      +
    259A  LYS*     1.3    74.3    -      -       -      +
    261A  ALA*     1.3    62.2    +      -       -      +
    263A  ALA*     3.3     5.7    +      -       -      +
    264A  ALA*     3.1    21.5    +      -       -      +
    270A  PRO*     4.8    13.7    -      -       +      +
    273A  ALA*     3.8    12.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 261 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    192A  ALA*     5.5     1.1    -      -       +      -
    257A  LEU      3.0    13.4    +      -       -      +
    258A  GLN*     3.2    21.5    +      -       -      +
    260A  ASN*     1.3    75.9    -      -       -      +
    262A  LEU*     1.3    58.0    +      -       -      +
    264A  ALA*     3.2     8.1    +      -       -      +
    265A  LEU*     2.8    41.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 262 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80A  LEU*     4.5    10.1    -      -       +      -
    189A  ILE*     3.7    39.7    -      -       +      +
    192A  ALA*     3.7    18.2    -      -       +      +
    193A  TYR*     3.9    16.6    -      -       +      +
    196A  LEU*     3.6    37.0    -      -       +      -
    258A  GLN      3.0    20.6    +      -       -      +
    259A  LYS*     3.7     4.3    -      -       -      +
    260A  ASN      3.3     0.2    -      -       -      -
    261A  ALA*     1.3    74.0    -      -       -      +
    263A  ALA*     1.3    65.6    +      -       -      +
    265A  LEU*     3.1     6.2    +      -       +      +
    266A  VAL*     3.1    28.5    +      -       -      +
    276A  ILE*     3.8    20.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 263 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    259A  LYS      3.0    13.5    +      -       -      +
    260A  ASN      3.3     9.4    +      -       -      +
    262A  LEU*     1.3    76.2    -      -       -      +
    264A  ALA*     1.3    61.1    +      -       -      +
    266A  VAL*     3.3    14.2    +      -       -      +
    267A  GLY      3.3     0.2    +      -       -      -
    268A  GLN*     2.9    25.7    +      -       -      +
    269A  GLY      3.5    24.5    -      -       -      +
    270A  PRO*     4.4     1.8    -      -       +      -
    272A  ARG*     4.0     7.6    -      -       +      -
    273A  ALA*     3.9    21.5    -      -       +      +
    276A  ILE*     4.3     1.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 264 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    260A  ASN      3.1    12.9    +      -       -      +
    261A  ALA*     3.2    10.7    +      -       -      +
    263A  ALA*     1.3    75.2    -      -       -      +
    265A  LEU*     1.3    59.3    +      -       +      +
    267A  GLY*     2.9    20.4    +      -       -      -
    268A  GLN      3.7    10.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 265 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     84A  ALA*     4.2     3.1    -      -       -      +
     88A  SER*     5.0     3.8    +      -       -      -
     90A  SER*     5.7     4.3    -      -       -      -
    185A  ILE*     5.0     3.8    -      -       -      +
    188A  SER*     3.8    33.4    +      -       -      +
    189A  ILE*     3.9    23.1    -      -       +      +
    192A  ALA*     3.6    31.2    -      -       +      -
    261A  ALA*     2.8    26.6    +      -       +      +
    262A  LEU*     3.1     7.6    +      -       -      +
    264A  ALA*     1.3    78.1    -      -       +      +
    266A  VAL*     1.3    60.1    +      -       -      +
    267A  GLY      3.3     0.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 266 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80A  LEU*     3.3    42.4    -      -       +      +
     83A  GLU*     4.2     6.1    -      -       +      +
     84A  ALA*     3.9    11.9    +      -       +      +
     87A  HIS      4.1     5.2    -      -       -      +
     88A  SER*     3.8    13.9    -      -       -      -
    189A  ILE*     3.7    18.4    -      -       +      -
    262A  LEU*     3.1    15.1    +      -       -      +
    263A  ALA*     3.4    16.2    -      -       -      +
    264A  ALA      3.1     0.8    -      -       -      -
    265A  LEU*     1.3    78.8    -      -       -      +
    267A  GLY*     1.3    59.3    +      -       -      +
    268A  GLN*     3.5    32.4    +      -       -      +
    272A  ARG*     4.3     6.1    -      -       +      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il