Contacts of the helix formed by residues 367 - 434 (chain A) in PDB entry 1YC9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 367 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366A GLY* 1.3 76.3 - - - +
368A ARG* 1.3 61.4 + - - +
370A GLU* 2.9 27.3 + - - -
371A GLY* 2.8 27.2 + - - -
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Residues in contact with ARG 368 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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360A TYR* 5.7 5.1 + - - -
362A PRO* 5.3 4.4 - - - +
365A THR* 3.3 40.9 + - - +
366A GLY 3.6 0.4 - - - -
367A GLY* 1.3 77.3 - - - +
369A LEU* 1.3 83.9 + - - +
372A GLN* 3.0 51.2 + - - +
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Residues in contact with LEU 369 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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321A ALA 4.9 1.7 - - - +
324A GLN* 3.6 48.9 - - + +
325A PHE* 3.5 41.6 - - + -
362A PRO* 3.8 26.2 - - + -
365A THR* 3.1 18.8 + - + +
368A ARG* 1.3 103.0 - - + +
370A GLU* 1.3 64.3 + - - +
372A GLN* 3.4 6.6 + - - +
373A LEU* 3.1 19.4 + - - +
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Residues in contact with GLU 370 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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325A PHE* 3.9 24.3 - - + -
364A PHE* 5.8 3.8 - - - -
365A THR* 3.4 13.3 + - - -
366A GLY 5.0 1.9 + - - -
367A GLY* 2.9 36.7 + - - +
369A LEU* 1.3 76.2 - - - +
371A GLY* 1.3 59.1 + - - +
373A LEU* 3.3 6.4 + - - +
374A THR* 3.0 29.6 + - - -
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Residues in contact with GLY 371 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367A GLY* 2.8 19.0 + - - -
368A ARG 4.0 0.2 - - - -
370A GLU* 1.3 74.6 - - - +
372A GLN* 1.3 59.8 + - - +
374A THR* 3.3 7.7 + - - -
375A SER* 2.9 32.9 + - - -
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Residues in contact with GLN 372 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ALA* 4.1 4.6 - - + +
324A GLN* 2.9 35.8 + - - +
368A ARG* 3.0 53.2 + - + +
369A LEU* 3.6 7.3 - - - +
370A GLU 3.2 0.2 - - - -
371A GLY* 1.3 73.3 - - - +
373A LEU* 1.3 59.3 + - - +
375A SER* 3.4 6.9 + - - -
376A ALA* 2.9 29.3 + - - +
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Residues in contact with LEU 373 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318A VAL* 3.9 9.6 - - + +
321A ALA* 3.7 24.8 - - + +
322A GLN* 3.8 28.7 - - + +
325A PHE* 4.1 21.8 - - + -
369A LEU 3.1 14.1 + - - +
370A GLU* 3.5 8.3 - - - +
371A GLY 3.2 0.2 - - - -
372A GLN* 1.3 73.8 - - - +
374A THR* 1.3 65.4 + - - +
376A ALA 3.1 1.2 + - - -
377A GLU* 2.8 52.1 + - + +
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Residues in contact with THR 374 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A GLU 3.0 15.0 + - - -
371A GLY* 3.3 11.1 + - - -
373A LEU* 1.3 76.3 - - - +
375A SER* 1.3 58.9 + - - +
377A GLU* 3.3 15.7 + - - +
378A ALA* 3.0 28.6 + - + +
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Residues in contact with SER 375 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371A GLY 2.9 17.1 + - - -
372A GLN* 3.7 7.4 - - - -
373A LEU 3.3 0.2 - - - -
374A THR* 1.3 77.5 - - - +
376A ALA* 1.3 58.2 + - - +
378A ALA* 3.3 7.8 + - - +
379A ARG* 2.9 28.1 + - - +
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Residues in contact with ALA 376 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314A ALA 4.6 1.7 - - - +
317A GLN* 3.8 29.2 - - + +
318A VAL* 3.4 15.9 - - - +
321A ALA* 3.9 10.5 - - + -
372A GLN 2.9 17.2 + - - +
373A LEU 3.6 4.0 - - - +
375A SER* 1.3 74.7 - - - +
377A GLU* 1.3 64.6 + - - +
379A ARG* 3.2 7.8 + - - +
380A TYR 3.0 18.0 + - - -
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Residues in contact with GLU 377 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318A VAL* 3.9 17.4 - - + +
322A GLN* 5.4 2.6 + - - -
373A LEU* 2.8 49.2 + - + +
374A THR* 3.7 12.8 + - - +
376A ALA* 1.3 75.6 - - - +
378A ALA* 1.3 57.4 + - - +
380A TYR* 3.2 4.9 + - - +
381A GLN* 3.0 44.3 + - - +
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Residues in contact with ALA 378 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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374A THR* 3.0 18.8 + - + +
375A SER* 3.5 9.0 - - - +
377A GLU* 1.3 73.4 - - - +
379A ARG* 1.3 60.3 + - - +
381A GLN* 3.3 13.3 + - - +
382A GLU* 2.9 29.6 + - - +
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Residues in contact with ARG 379 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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170A GLU* 5.0 4.8 + - - -
310A ARG* 4.1 29.9 + - - +
314A ALA* 4.1 13.3 - - + +
317A GLN* 4.2 16.0 - - - +
375A SER 2.9 16.8 + - - +
376A ALA* 3.2 7.8 + - - +
378A ALA* 1.3 75.8 - - - +
380A TYR* 1.3 58.9 + - - +
382A GLU* 2.8 37.1 + - - +
383A ALA* 2.8 48.6 + - - +
386A GLN* 2.9 26.3 + - - +
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Residues in contact with TYR 380 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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311A ALA* 3.6 18.6 - - + -
314A ALA* 3.6 10.0 - - + +
315A ALA* 3.5 33.0 - - + -
318A VAL* 3.8 15.3 - - + -
376A ALA 3.0 13.4 + - - +
377A GLU* 3.4 9.4 - - - +
379A ARG* 1.3 77.0 - - - +
381A GLN* 1.3 64.9 + - + +
383A ALA* 3.2 1.4 + - - +
384A VAL* 2.9 54.7 + - + +
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Residues in contact with GLN 381 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A GLU* 3.0 38.6 + - + +
378A ALA* 3.7 10.7 - - - +
380A TYR* 1.3 85.3 - - + +
382A GLU* 1.3 61.6 + - - +
384A VAL* 3.4 6.6 + - - +
385A ALA* 3.0 23.8 + - - +
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Residues in contact with GLU 382 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378A ALA 2.9 17.2 + - - +
379A ARG* 2.8 39.6 + - - +
381A GLN* 1.3 74.3 - - - +
383A ALA* 1.3 51.7 + - - +
385A ALA* 3.1 7.3 + - - +
386A GLN* 2.8 51.5 + - + +
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Residues in contact with ALA 383 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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307A ALA* 4.5 2.4 - - - +
310A ARG* 5.2 1.3 - - + -
311A ALA* 3.8 29.5 - - - +
314A ALA* 4.0 6.7 - - + -
379A ARG* 2.8 38.6 + - - +
380A TYR 3.7 4.3 - - - +
382A GLU* 1.3 77.5 - - - +
384A VAL* 1.3 54.8 + - - +
386A GLN* 3.3 12.7 + - - +
387A TYR* 2.9 28.1 + - - +
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Residues in contact with VAL 384 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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311A ALA* 4.4 8.5 - - + -
380A TYR* 2.9 57.5 + - + +
381A GLN* 3.8 6.5 - - - +
383A ALA* 1.3 72.4 - - - +
385A ALA* 1.3 61.8 + - - +
387A TYR* 3.2 10.0 + - + +
388A ASN* 2.9 44.0 + - - +
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Residues in contact with ALA 385 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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381A GLN 3.0 17.5 + - - +
382A GLU* 3.5 7.9 - - + +
384A VAL* 1.3 76.8 - - - +
386A GLN* 1.3 53.7 + - + +
388A ASN* 3.2 10.1 + - - +
389A GLY* 2.8 31.7 + - - -
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Residues in contact with GLN 386 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307A ALA* 4.6 6.1 - - + -
379A ARG* 2.9 29.9 + - - +
382A GLU* 2.8 34.3 + - + +
383A ALA* 3.6 10.2 - - - +
384A VAL 3.2 0.2 - - - -
385A ALA* 1.3 73.2 - - + +
387A TYR* 1.3 62.4 + - - +
389A GLY* 3.3 2.7 + - - +
390A THR* 2.8 30.0 + - - +
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Residues in contact with TYR 387 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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304A ILE* 3.7 35.6 - - + +
307A ALA* 3.8 17.6 - - + +
308A ARG* 3.6 45.8 + - + -
311A ALA* 4.9 4.5 - - + -
383A ALA 2.9 14.9 + - - +
384A VAL* 3.2 12.8 + - + +
386A GLN* 1.3 75.7 - - - +
388A ASN* 1.3 79.1 + - - +
390A THR* 3.0 5.2 + - - -
391A LEU* 2.9 39.3 + - + +
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Residues in contact with ASN 388 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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384A VAL* 2.9 35.4 + - - +
385A ALA* 3.6 7.6 - - - +
387A TYR* 1.3 91.9 - - - +
389A GLY* 1.3 57.4 + - - +
391A LEU* 3.2 13.2 + - - +
392A VAL* 2.9 35.2 + - + +
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Residues in contact with GLY 389 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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385A ALA 2.8 16.4 + - - -
386A GLN* 3.7 2.7 - - - -
387A TYR 3.2 0.2 - - - -
388A ASN* 1.3 75.9 - - - +
390A THR* 1.3 57.5 + - - +
392A VAL* 3.7 7.5 - - - +
393A GLN* 2.9 30.8 + - - +
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Residues in contact with THR 390 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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303A ASP* 3.5 35.5 - - + +
304A ILE* 3.7 24.2 - - + +
307A ALA* 4.1 9.2 - - - +
386A GLN* 2.8 19.4 + - - +
387A TYR* 3.0 11.6 + - - -
389A GLY* 1.3 74.5 - - - +
391A LEU* 1.3 58.7 + - - +
393A GLN* 3.4 6.3 + - + +
394A ALA* 2.9 28.4 + - - +
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Residues in contact with LEU 391 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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295A VAL* 5.2 5.8 - - + -
298A LEU* 3.2 35.0 - - + -
304A ILE* 4.2 16.3 - - + +
387A TYR* 2.9 36.0 + - + +
388A ASN* 3.3 15.3 - - - +
390A THR* 1.3 73.6 - - - +
392A VAL* 1.3 65.1 + - + +
394A ALA* 3.2 1.0 + - - +
395A LEU* 3.0 40.3 + - + +
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Residues in contact with VAL 392 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388A ASN* 2.9 23.7 + - + +
389A GLY* 3.7 8.1 - - - +
390A THR 3.3 0.2 - - - -
391A LEU* 1.3 79.6 - - + +
393A GLN* 1.3 59.2 + - - +
395A LEU* 3.3 10.5 + - + +
396A HIS* 2.9 29.0 + - + +
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Residues in contact with GLN 393 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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301A ARG* 5.5 2.2 - - - +
303A ASP* 6.2 0.2 - - - +
389A GLY 2.9 17.0 + - - +
390A THR* 3.8 6.3 - - - +
392A VAL* 1.3 78.4 - - - +
394A ALA* 1.3 58.6 + - - +
396A HIS* 2.9 30.8 + - - +
397A GLU* 3.0 61.9 + - - +
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Residues in contact with ALA 394 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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298A LEU* 4.0 9.4 - - + -
301A ARG* 3.5 37.8 + - - +
304A ILE* 3.8 16.8 - - + -
390A THR 2.9 19.0 + - - +
391A LEU 3.2 4.0 + - - +
393A GLN* 1.3 73.2 - - - +
395A LEU* 1.3 61.2 - - - +
397A GLU* 3.3 2.8 + - - +
398A ILE* 3.0 35.4 + - - +
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Residues in contact with LEU 395 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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295A VAL* 4.0 33.7 - - + +
297A LEU* 5.1 2.0 - - + -
298A LEU* 3.8 27.6 - - + -
391A LEU* 3.0 35.8 + - + +
392A VAL* 3.7 8.3 - - + +
394A ALA* 1.3 77.6 - - - +
396A HIS* 1.3 54.8 + - - +
398A ILE* 3.5 5.8 + - + +
399A ALA* 2.8 30.3 + - - +
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Residues in contact with HIS 396 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A VAL* 2.9 16.6 + - + +
393A GLN* 2.9 36.8 + - - +
395A LEU* 1.3 75.2 - - - +
397A GLU* 1.3 59.1 + - + +
399A ALA* 3.3 6.6 + - + +
400A ASP* 2.9 53.0 + - - +
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Residues in contact with GLU 397 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301A ARG* 2.9 35.9 + - - +
393A GLN* 3.0 48.7 + - - +
394A ALA 3.3 4.7 + - - +
396A HIS* 1.3 76.9 - - + +
398A ILE* 1.3 57.2 + - - +
400A ASP* 3.3 8.2 + - - +
401A VAL* 3.0 32.1 + - - +
473A HIS* 4.4 17.2 + - - -
474A ALA* 4.2 9.4 - - + -
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Residues in contact with ILE 398 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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297A LEU* 4.0 38.8 - - + +
298A LEU* 3.2 35.0 - - + -
394A ALA* 3.0 14.7 + - + +
395A LEU* 3.9 7.0 - - + +
397A GLU* 1.3 73.8 - - - +
399A ALA* 1.3 64.8 + - - +
401A VAL* 3.3 5.2 + - + +
402A VAL* 3.0 33.5 + - + +
471A LEU* 5.7 4.9 - - + -
474A ALA* 3.8 34.1 - - + +
475A LEU* 4.7 7.4 - - + -
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Residues in contact with ALA 399 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A LEU 2.8 23.4 + - - +
396A HIS* 3.6 8.3 - - + +
398A ILE* 1.3 72.9 - - - +
400A ASP* 1.3 59.7 + - - +
402A VAL* 3.5 7.7 + - - +
403A THR* 2.9 33.4 + - - +
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Residues in contact with ASP 400 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A HIS* 2.9 45.3 + - - +
397A GLU* 3.6 7.3 - - - +
398A ILE 3.2 0.2 - - - -
399A ALA* 1.3 74.5 - - - +
401A VAL* 1.3 61.8 + - + +
403A THR* 3.2 7.7 + - - +
404A SER* 2.9 36.4 + - - +
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Residues in contact with VAL 401 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397A GLU 3.0 20.0 + - - +
398A ILE* 3.3 8.0 + - - +
400A ASP* 1.3 75.2 - - + +
402A VAL* 1.3 53.8 + - + +
404A SER* 4.1 0.5 - - - -
405A SER* 2.7 52.3 + - - +
467A LEU* 3.9 14.3 - - + +
470A ALA* 3.5 36.8 - - + +
471A LEU* 3.8 35.9 - - + +
474A ALA* 4.1 7.4 - - + -
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Residues in contact with VAL 402 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297A LEU* 6.3 0.7 - - + -
398A ILE* 3.0 30.5 + - + +
399A ALA* 3.6 10.3 - - - +
401A VAL* 1.3 75.2 - - + +
403A THR* 1.3 68.3 + - - +
405A SER* 4.4 4.3 - - - -
406A GLN* 2.9 55.3 + - + +
471A LEU* 6.2 2.9 - - + -
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Residues in contact with THR 403 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399A ALA* 2.9 21.6 + - - +
400A ASP* 3.5 10.6 + - - +
402A VAL* 1.3 79.3 - - - +
404A SER* 1.3 65.9 + - - +
406A GLN* 3.8 7.6 - - - +
407A ALA* 3.1 24.0 + - + +
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Residues in contact with SER 404 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400A ASP* 2.9 19.7 + - - +
401A VAL 4.1 0.2 - - - -
403A THR* 1.3 79.2 - - - +
405A SER* 1.3 66.5 + - - +
407A ALA* 3.3 7.0 + - - +
408A LEU* 3.1 24.3 + - - +
463A ARG* 3.4 23.4 + - - -
467A LEU* 3.6 26.8 - - - +
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Residues in contact with SER 405 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
401A VAL* 2.7 37.1 + - - +
402A VAL* 3.8 5.2 - - - -
404A SER* 1.3 77.5 - - - +
406A GLN* 1.3 62.0 + - - +
408A LEU* 3.3 15.4 + - - +
409A GLN* 4.4 2.4 + - - +
467A LEU* 3.9 21.3 + - - +
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Residues in contact with GLN 406 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402A VAL* 2.9 41.2 + - + +
403A THR* 3.8 6.9 - - - +
405A SER* 1.3 78.9 - - - +
407A ALA* 1.3 59.4 + - - +
408A LEU 3.5 0.3 + - - -
409A GLN* 4.4 5.0 + - - +
410A ALA* 5.2 2.4 + - - +
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Residues in contact with ALA 407 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
403A THR* 3.1 20.5 + - + +
404A SER* 3.3 7.5 + - - +
406A GLN* 1.3 78.1 - - - +
408A LEU* 1.3 64.4 + - - +
409A GLN 3.4 1.0 + - - -
410A ALA* 3.6 6.9 + - - +
411A ARG* 3.4 32.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 408 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
404A SER 3.1 15.3 + - - +
405A SER* 3.3 9.2 + - - +
406A GLN 3.3 2.0 - - - -
407A ALA* 1.3 77.3 - - - +
409A GLN* 1.3 65.9 + - - +
411A ARG* 3.1 8.8 + - + +
412A ILE* 2.9 32.6 + - + +
460A LEU* 3.7 39.5 - - + +
463A ARG* 4.0 15.3 - - - +
464A ALA* 3.5 40.6 - - + +
467A LEU* 4.1 10.8 - - + -
----------------------------------------------------------
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Residues in contact with GLN 409 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405A SER 4.4 2.7 + - - +
406A GLN 4.4 4.7 + - - +
407A ALA 3.4 0.6 - - - -
408A LEU* 1.3 80.6 - - - +
410A ALA* 1.3 57.9 + - - +
412A ILE* 3.3 23.5 + - - +
413A ASN* 2.8 60.6 + - - +
416A GLU* 4.9 0.8 + - - -
----------------------------------------------------------
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Residues in contact with ALA 410 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406A GLN 5.2 1.7 + - - +
407A ALA* 3.6 7.7 + - - +
408A LEU 3.3 0.6 - - - -
409A GLN* 1.3 74.9 - - - +
411A ARG* 1.3 62.1 + - + +
413A ASN* 3.5 11.0 - - - +
414A LYS* 2.9 38.6 + - + +
----------------------------------------------------------
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Residues in contact with ARG 411 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407A ALA* 3.4 27.7 + - + +
408A LEU* 3.1 10.5 + - - +
410A ALA* 1.3 75.4 - - + +
412A ILE* 1.3 57.8 + - - +
414A LYS* 3.9 4.0 - - - +
415A THR* 2.7 38.5 + - - -
460A LEU* 3.7 33.8 - - + +
463A ARG* 4.0 25.9 - - - +
----------------------------------------------------------
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Residues in contact with ILE 412 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408A LEU* 2.9 31.9 + - + +
409A GLN* 3.5 28.0 - - - +
411A ARG* 1.3 74.4 - - - +
413A ASN* 1.3 54.1 + - - +
415A THR* 3.2 1.9 + - - -
416A GLU* 2.7 54.4 + - - +
457A LEU* 4.1 10.2 - - + +
460A LEU* 3.7 45.5 - - + +
461A GLN* 4.3 12.1 - - + +
464A ALA* 5.1 3.6 - - + -
----------------------------------------------------------
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Residues in contact with ASN 413 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A GLN* 2.8 51.9 + - - +
410A ALA* 3.5 10.5 - - - +
411A ARG 3.3 0.2 - - - -
412A ILE* 1.3 75.1 - - - +
414A LYS* 1.3 65.6 + - + +
416A GLU* 3.3 16.1 + - - +
417A GLN* 3.0 37.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 414 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410A ALA* 2.9 23.1 + - + +
411A ARG* 4.1 3.8 - - - +
413A ASN* 1.3 77.8 - - + +
415A THR* 1.3 59.5 + - - +
417A GLN* 2.7 40.7 + - - +
418A ALA* 3.0 25.8 + - - +
----------------------------------------------------------
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Residues in contact with THR 415 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
411A ARG* 2.7 22.2 + - - -
412A ILE* 3.7 3.6 - - - -
414A LYS* 1.3 75.1 - - - +
416A GLU* 1.3 59.4 + - - +
418A ALA* 3.2 6.9 + - + +
419A VAL* 2.9 28.0 + - - +
453A ASN* 3.8 13.5 - - + +
456A ALA* 3.9 12.6 - - + -
457A LEU* 3.6 33.4 - - - +
460A LEU* 3.2 16.0 - - + +
----------------------------------------------------------
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Residues in contact with GLU 416 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A GLN* 4.9 0.7 + - - -
412A ILE* 2.7 35.3 + - - +
413A ASN* 3.5 23.1 - - - +
415A THR* 1.3 71.9 - - - +
417A GLN* 1.3 57.3 + - + +
419A VAL* 3.2 3.3 + - - +
420A GLN* 2.9 41.5 + - + +
457A LEU* 3.8 27.5 - - + +
461A GLN* 4.6 9.4 + - - -
----------------------------------------------------------
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Residues in contact with GLN 417 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
413A ASN* 3.0 29.4 + - - +
414A LYS* 2.7 46.1 + - - +
415A THR 3.3 0.2 - - - -
416A GLU* 1.3 77.5 - - + +
418A ALA* 1.3 62.2 + - - +
420A GLN* 4.5 9.0 - - - +
421A GLN* 3.0 35.2 + - + +
----------------------------------------------------------
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Residues in contact with ALA 418 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414A LYS 3.0 13.9 + - - +
415A THR* 3.2 11.6 + - + +
417A GLN* 1.3 74.9 - - - +
419A VAL* 1.3 62.6 - - - +
421A GLN* 4.2 3.5 - - - +
422A ALA* 2.9 28.1 + - - +
453A ASN* 3.6 27.0 + - + +
----------------------------------------------------------
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Residues in contact with VAL 419 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415A THR 2.9 16.7 + - - +
416A GLU* 3.5 9.0 - - - +
418A ALA* 1.3 77.5 - - - +
420A GLN* 1.3 62.3 + - + +
422A ALA 3.2 0.2 + - - -
423A GLU* 2.8 35.2 + - - +
450A LEU* 3.6 9.7 - - + +
453A ASN* 3.3 40.2 - - - +
454A GLN* 3.6 24.7 - - + +
457A LEU* 4.0 18.2 - - + -
----------------------------------------------------------
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Residues in contact with GLN 420 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416A GLU* 2.9 27.1 + - + +
417A GLN* 4.0 8.7 - - - +
419A VAL* 1.3 80.6 - - + +
421A GLN* 1.3 60.1 + - + +
423A GLU* 3.3 12.5 + - - +
424A GLN* 3.1 25.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 421 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
417A GLN* 3.0 22.6 + - + +
418A ALA* 4.2 3.6 - - - +
420A GLN* 1.3 75.3 - - + +
422A ALA* 1.3 61.2 + - - +
424A GLN* 3.4 10.6 + - - +
425A ALA* 2.9 28.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA 422 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418A ALA 2.9 19.1 + - - +
419A VAL 3.6 3.6 - - - +
421A GLN* 1.3 76.3 - - - +
423A GLU* 1.3 57.8 + - - +
425A ALA* 3.3 8.9 + - - +
426A LEU* 2.9 28.8 + - - +
446A ALA 4.4 4.8 - - - +
449A SER* 3.6 24.0 - - - +
450A LEU* 3.8 23.1 - - + +
453A ASN* 3.9 4.0 - - - +
----------------------------------------------------------
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Residues in contact with GLU 423 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419A VAL* 2.8 25.2 + - - +
420A GLN* 3.6 14.2 + - - +
421A GLN 3.2 0.2 - - - -
422A ALA* 1.3 76.5 - - - +
424A GLN* 1.3 57.5 + - - +
426A LEU* 3.2 4.0 + - + +
427A HIS* 3.0 30.0 + - + +
450A LEU* 3.9 24.9 - - + +
454A GLN* 5.7 2.7 + - - -
----------------------------------------------------------
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Residues in contact with GLN 424 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420A GLN 3.1 13.7 + - - +
421A GLN* 3.6 16.8 - - - +
423A GLU* 1.3 76.5 - - - +
425A ALA* 1.3 63.6 + - - +
427A HIS* 3.2 20.8 + - - +
428A ILE* 2.9 55.7 + - + +
----------------------------------------------------------
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Residues in contact with ALA 425 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421A GLN 2.9 17.5 + - - +
422A ALA* 3.3 9.6 + - - +
424A GLN* 1.3 75.1 - - - +
426A LEU* 1.3 56.8 + - - +
428A ILE* 3.5 7.4 + - - +
429A ALA* 2.9 29.3 + - - +
446A ALA* 4.1 12.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 426 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212A VAL* 5.2 11.2 - - + -
213A ARG* 5.8 1.1 - - - +
422A ALA 2.9 16.1 + - - +
423A GLU* 3.6 5.8 - - + +
425A ALA* 1.3 74.2 - - - +
427A HIS* 1.3 57.9 + - - +
429A ALA* 3.6 0.4 - - - +
430A THR* 2.8 58.4 + - + +
443A VAL* 3.9 9.4 - - + +
446A ALA* 3.6 12.3 - - + +
447A GLU* 3.6 43.7 - - + +
450A LEU* 3.8 24.2 - - + -
----------------------------------------------------------
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Residues in contact with HIS 427 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423A GLU* 3.0 18.7 + - + +
424A GLN* 3.5 26.7 - - - +
426A LEU* 1.3 76.9 - - - +
428A ILE* 1.3 63.5 + - + +
430A THR* 3.2 8.0 + - - -
431A ASN* 2.7 61.7 + - - -
----------------------------------------------------------
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Residues in contact with ILE 428 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424A GLN* 2.9 51.2 + - + +
425A ALA* 3.9 5.6 - - - +
427A HIS* 1.3 81.8 - - + +
429A ALA* 1.3 63.5 + - - +
431A ASN* 3.8 5.4 - - - +
432A ARG* 3.0 44.7 + - + +
----------------------------------------------------------
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Residues in contact with ALA 429 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425A ALA 2.9 18.6 + - - +
426A LEU* 3.2 7.6 + - - +
428A ILE* 1.3 78.0 - - - +
430A THR* 1.3 58.3 + - - +
432A ARG* 3.7 7.0 + - - +
433A TYR* 2.9 26.5 + - - +
438A ALA* 4.3 5.9 - - - +
442A ASP* 4.0 30.3 - - + +
443A VAL* 3.5 15.9 - - + +
446A ALA* 4.5 1.1 - - + -
----------------------------------------------------------
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Residues in contact with THR 430 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216A THR* 6.1 0.4 - - - +
426A LEU* 2.8 42.6 + - + +
427A HIS* 3.2 12.8 + - - -
429A ALA* 1.3 76.6 - - - +
431A ASN* 1.3 60.1 + - - +
433A TYR* 3.1 7.1 + - - +
434A GLN* 2.7 47.0 + - - +
443A VAL* 4.1 14.1 - - + -
447A GLU* 5.8 0.7 - - - +
----------------------------------------------------------
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Residues in contact with ASN 431 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427A HIS* 2.7 57.8 + - - +
428A ILE* 3.8 5.5 - - - +
430A THR* 1.3 77.1 + - - +
432A ARG* 1.3 65.0 + - + +
434A GLN* 3.1 27.5 + - - +
435A GLY* 3.2 9.7 + - - -
----------------------------------------------------------
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Residues in contact with ARG 432 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428A ILE* 3.0 38.4 + - + +
429A ALA* 3.8 2.0 - - - +
431A ASN* 1.3 77.9 - - + +
433A TYR* 1.3 58.1 + - - +
435A GLY* 3.3 2.3 + - - +
436A GLY 3.0 9.4 + - - -
437A LEU* 3.0 77.7 + - + +
438A ALA* 3.8 25.3 - - + +
----------------------------------------------------------
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Residues in contact with TYR 433 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
219A LEU* 3.9 16.8 - - + -
220A LEU* 3.4 29.9 - - + +
223A ARG* 3.0 59.5 + - - -
229A GLU* 2.2 41.8 + - - +
429A ALA 2.9 19.6 + - - +
430A THR* 3.1 6.4 + - - +
432A ARG* 1.3 71.9 - - - +
434A GLN* 1.3 58.7 + - - +
435A GLY 2.7 11.3 + - - -
436A GLY* 3.1 6.1 + - - +
438A ALA* 3.4 22.2 - - - +
439A THR* 3.8 10.3 - - - -
440A TYR* 3.7 18.6 - + - -
443A VAL* 3.9 13.0 - - + -
----------------------------------------------------------
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Residues in contact with GLN 434 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
219A LEU* 4.1 30.0 - - + +
223A ARG* 4.5 6.5 + - - +
430A THR* 2.7 29.7 + - - +
431A ASN* 3.1 19.0 + - - +
433A TYR* 1.3 71.6 - - + +
435A GLY* 1.3 55.0 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il