Contacts of the helix formed by residues 22 - 52 (chain E) in PDB entry 1ZLL
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN 22 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20E MET* 2.7 16.6 + - - +
21E PRO* 1.3 70.8 - - - +
23E GLN* 1.3 60.7 + - + +
24E ALA 2.9 0.7 - - - -
25E ARG* 2.5 46.0 + - - +
26E GLN* 3.4 23.3 + - - +
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Residues in contact with GLN 23 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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14A ARG* 4.0 24.8 + - - +
21E PRO* 2.3 29.5 + - + +
22E GLN* 1.3 73.0 - - + +
24E ALA* 1.3 61.5 + - - +
26E GLN* 3.6 5.8 + - - +
27E LYS* 3.0 30.1 + - + +
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Residues in contact with ALA 24 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20E MET* 4.9 5.6 - - + -
21E PRO* 3.9 27.5 + - + +
22E GLN 2.6 5.5 + - - -
23E GLN* 1.3 74.2 - - - +
25E ARG* 1.3 65.2 + - - +
27E LYS* 4.0 19.5 - - - +
28E LEU* 2.7 44.1 + - + +
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Residues in contact with ARG 25 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31D LEU* 5.2 11.7 - - - +
20E MET* 3.5 33.7 - - + +
22E GLN* 2.5 27.8 + - - +
24E ALA* 1.3 76.5 - - - +
26E GLN* 1.3 74.4 + - + +
28E LEU* 3.8 4.3 - - - +
29E GLN* 3.2 54.8 + - + +
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Residues in contact with GLN 26 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22E GLN* 3.4 28.8 + - - +
23E GLN* 4.2 7.0 - - - +
24E ALA 3.4 0.2 - - - -
25E ARG* 1.3 88.1 - - + +
27E LYS* 1.3 64.3 + - - +
28E LEU 3.1 1.0 + - - -
29E GLN* 3.3 12.0 + - + +
30E ASN* 3.3 14.6 + - - +
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Residues in contact with LYS 27 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23E GLN* 3.0 14.4 + - + +
24E ALA* 3.6 23.9 - - - +
26E GLN* 1.3 78.2 - - - +
28E LEU* 1.3 76.0 + - - +
30E ASN* 5.2 2.0 - - - -
31E LEU* 2.8 59.2 + - + +
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Residues in contact with LEU 28 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20E MET* 5.4 7.9 - - + -
24E ALA* 2.7 42.3 + - + +
25E ARG* 3.8 7.0 - - - +
27E LYS* 1.3 90.3 - - + +
29E GLN* 1.3 60.3 + - + +
31E LEU* 4.5 3.1 - - + -
32E PHE* 2.6 45.7 + - + +
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Residues in contact with GLN 29 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30D ASN* 4.1 13.5 + - - +
31D LEU* 5.8 3.3 - - - +
34D ASN* 4.8 21.4 + - - +
25E ARG* 3.2 58.0 + - + +
26E GLN* 4.0 5.2 - - + +
28E LEU* 1.3 77.2 - - + +
30E ASN* 1.3 62.8 + - - +
32E PHE* 3.7 5.7 - - - +
33E ILE* 3.2 31.5 + - + +
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Residues in contact with ASN 30 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26E GLN 3.3 11.7 + - - +
27E LYS* 4.3 1.6 - - - +
28E LEU 3.3 0.2 - - - -
29E GLN* 1.3 76.1 - - - +
31E LEU* 1.3 77.2 + - + +
32E PHE 3.0 0.9 + - - -
33E ILE* 3.2 13.3 + - - +
34E ASN* 3.1 37.8 + - - +
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Residues in contact with LEU 31 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27E LYS* 2.8 58.6 + - + +
28E LEU* 4.3 4.7 - - + +
30E ASN* 1.3 83.1 + - + +
32E PHE* 1.3 61.5 + - - +
34E ASN* 3.6 6.9 + - + +
35E PHE* 2.9 24.9 + - - +
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Residues in contact with PHE 32 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34D ASN* 4.8 10.3 - - + -
37D LEU* 4.7 6.7 - - + -
38D ILE* 3.5 40.6 - - + -
41D CYS* 6.2 1.6 - - - -
28E LEU* 2.6 36.2 + - + +
29E GLN* 3.7 6.1 - - - +
31E LEU* 1.3 73.4 - - - +
33E ILE* 1.3 71.4 + - + +
35E PHE* 2.6 27.1 + + + +
36E CYS* 2.7 45.1 + - - -
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Residues in contact with ILE 33 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A ILE* 6.4 0.9 - - + -
33D ILE* 6.0 5.2 - - + -
34D ASN* 5.7 6.7 - - + -
37D LEU* 4.1 21.1 - - + -
29E GLN* 3.2 19.5 + - + +
30E ASN* 3.2 11.8 + - - +
32E PHE* 1.3 80.4 - - + +
34E ASN* 1.3 75.2 + - - +
36E CYS* 2.8 22.7 + - - +
37E LEU* 3.1 23.8 + - + +
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Residues in contact with ASN 34 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A GLN* 4.6 16.5 - - - +
32A PHE* 5.2 2.8 - - + -
33A ILE* 4.7 19.5 - - - +
30E ASN* 3.1 32.0 + - - +
31E LEU* 3.9 9.9 - - + +
32E PHE 3.2 0.8 - - - -
33E ILE* 1.3 85.7 - - - +
35E PHE* 1.3 63.9 + - - +
36E CYS 3.2 0.3 + - - -
37E LEU* 3.3 12.8 + - + +
38E ILE* 3.3 28.8 + - + +
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Residues in contact with PHE 35 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31E LEU 2.9 15.9 + - - +
32E PHE* 2.6 30.3 + + + +
34E ASN* 1.3 73.6 - - - +
36E CYS* 1.3 55.8 + - - -
38E ILE* 3.4 13.4 + - + +
39E LEU* 2.8 53.0 + - + -
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Residues in contact with CYS 36 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37D LEU* 4.0 26.7 - - + -
41D CYS* 5.3 4.0 - - - -
32E PHE* 2.7 74.2 + - - -
33E ILE* 2.8 10.2 + - - +
35E PHE* 1.3 72.2 - - - +
37E LEU* 1.3 68.8 + - + +
39E LEU* 2.8 10.2 + - - +
40E ILE* 2.8 34.1 + - + +
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Residues in contact with LEU 37 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A PHE* 4.7 3.1 - - + -
33A ILE* 3.7 42.6 - - + -
36A CYS* 4.6 19.5 - - + -
37A LEU* 6.0 6.3 - - + -
40A ILE* 5.3 5.8 - - + +
37D LEU* 5.6 7.4 - - + -
33E ILE* 3.1 21.5 + - + +
34E ASN* 3.3 16.4 + - - +
36E CYS* 1.3 80.6 - - + +
38E ILE* 1.3 56.1 + - - +
40E ILE* 3.4 12.8 + - + +
41E CYS* 2.5 35.7 + - - -
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Residues in contact with ILE 38 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A PHE* 3.6 33.2 - - + -
34E ASN* 3.3 19.2 + - + +
35E PHE* 3.8 12.1 - - + +
36E CYS 3.2 0.6 - - - -
37E LEU* 1.3 75.3 - - - +
39E LEU* 1.3 63.1 + - - +
41E CYS* 3.3 8.9 + - + +
42E LEU* 3.1 40.1 + - + +
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Residues in contact with LEU 39 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41D CYS* 3.8 36.6 - - + -
45D ILE* 6.1 3.1 - - + -
35E PHE* 2.8 43.4 + - + +
36E CYS* 2.8 7.8 + - - +
38E ILE* 1.3 78.8 - - - +
40E ILE* 1.3 64.5 + - + +
42E LEU* 3.5 3.7 + - - +
43E LEU* 3.0 44.8 + - + +
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Residues in contact with ILE 40 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A ILE* 5.2 10.8 - - + -
37D LEU* 5.0 15.3 - - + +
40D ILE* 4.8 12.1 - - + -
41D CYS* 4.2 23.1 - - - -
44D LEU* 4.4 19.3 - - + -
36E CYS* 2.8 37.6 + - + +
37E LEU* 3.9 11.7 - - + +
39E LEU* 1.3 72.7 - - + +
41E CYS* 1.3 65.9 + - - +
43E LEU* 3.2 8.9 - - - +
44E LEU* 3.1 36.1 + - + +
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Residues in contact with CYS 41 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A PHE* 5.4 3.8 - - + -
36A CYS* 4.8 10.1 - - - -
39A LEU* 4.2 27.8 - - + -
40A ILE* 4.4 18.8 - - - -
43A LEU* 5.3 1.1 - - - -
37E LEU 2.5 32.7 + - - -
38E ILE* 3.5 11.2 - - + +
39E LEU 3.1 0.2 - - - -
40E ILE* 1.3 76.1 - - - +
42E LEU* 1.3 68.3 + - + +
43E LEU 2.7 4.8 + - - -
44E LEU* 3.0 17.0 + - - +
45E ILE* 3.1 18.7 + - + +
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Residues in contact with LEU 42 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38E ILE* 3.1 31.6 + - + +
39E LEU* 4.1 4.7 - - - +
41E CYS* 1.3 79.1 - - + +
43E LEU* 1.3 66.5 + - + +
45E ILE* 3.6 17.6 + - + +
46E CYS* 3.1 29.4 + - - -
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Residues in contact with LEU 43 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41D CYS* 5.8 1.1 - - - +
44D LEU* 4.4 25.8 - - + -
45D ILE* 4.6 15.7 - - + -
48D ILE* 3.6 29.8 - - + -
39E LEU* 3.0 43.3 + - + +
40E ILE* 3.2 14.8 - - - +
41E CYS 2.7 4.6 + - - -
42E LEU* 1.3 74.2 - - + +
44E LEU* 1.3 67.2 + - - +
46E CYS* 2.7 28.7 + - + +
47E ILE* 3.2 8.9 + - + +
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Residues in contact with LEU 44 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40A ILE* 4.1 33.4 - - + -
43A LEU* 4.2 21.8 - - + -
44A LEU* 4.4 17.3 - - + -
47A ILE* 5.2 9.7 - - + +
44D LEU* 4.2 22.4 - - + -
40E ILE* 3.4 27.8 - - + +
41E CYS* 3.0 7.4 + - - +
43E LEU* 1.3 76.7 - - + +
45E ILE* 1.3 63.8 + - - +
47E ILE* 3.4 13.8 + - + +
48E ILE* 3.0 28.6 + - + +
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Residues in contact with ILE 45 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39A LEU* 5.6 4.9 - - + -
43A LEU* 4.7 18.6 - - + -
41E CYS* 3.1 18.4 + - + +
42E LEU* 3.6 21.5 - - + +
43E LEU 3.0 0.6 - - - -
44E LEU* 1.3 77.0 - - - +
46E CYS* 1.3 65.7 + - - +
48E ILE* 3.1 11.5 + - + +
49E VAL* 2.9 39.1 + - + +
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Residues in contact with CYS 46 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48D ILE* 4.7 11.9 - - + -
42E LEU* 3.1 21.2 + - - +
43E LEU* 2.7 22.0 + - + +
45E ILE* 1.3 74.1 - - - +
47E ILE* 1.3 66.0 + - - +
49E VAL* 2.9 20.9 + - - +
50E MET* 3.1 12.3 + - - +
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Residues in contact with ILE 47 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A ILE* 6.3 3.8 - - + -
44D LEU* 4.2 28.0 - - + +
47D ILE* 5.8 8.7 - - + -
48D ILE* 3.8 34.5 - - + +
51D LEU* 4.6 19.5 - - + -
43E LEU 3.2 14.3 + - - +
44E LEU* 3.6 20.4 - - + +
46E CYS* 1.3 73.8 - - - +
48E ILE* 1.3 66.3 + - + +
50E MET* 2.9 18.8 + - + +
51E LEU* 3.1 20.5 + - + +
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Residues in contact with ILE 48 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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43A LEU* 3.4 34.3 - - + +
46A CYS* 5.0 7.6 - - + -
47A ILE* 4.2 35.0 - - + -
50A MET* 5.0 6.7 - - + -
44E LEU* 3.0 18.2 + - + +
45E ILE* 3.4 10.3 - - + +
47E ILE* 1.3 75.8 - - + +
49E VAL* 1.3 68.8 + - + +
50E MET 2.8 1.6 + - - -
51E LEU* 2.8 20.1 + - - +
52E LEU* 3.2 26.9 + - + +
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Residues in contact with VAL 49 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45E ILE* 2.9 34.0 + - + +
46E CYS* 2.9 10.7 + - - +
48E ILE* 1.3 77.5 - - + +
50E MET* 1.3 60.3 + - + +
52E LEU* 3.6 30.4 - - + +
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Residues in contact with MET 50 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48D ILE* 5.9 4.5 - - + -
51D LEU* 5.5 16.8 - - + +
52D LEU* 4.6 25.8 - - + -
46E CYS 3.1 8.8 + - - +
47E ILE* 2.9 14.4 + - - +
48E ILE 2.8 1.6 + - - -
49E VAL* 1.3 78.7 - - + +
51E LEU* 1.3 69.5 + - + +
52E LEU 3.4 3.5 + - - -
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Residues in contact with LEU 51 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A ILE* 4.4 22.9 - - + -
50A MET* 3.9 27.1 - - + +
51A LEU* 6.0 7.0 - - + -
51D LEU* 3.8 28.0 - - + -
47E ILE* 3.5 20.2 - - + +
48E ILE* 2.8 14.0 + - - +
50E MET* 1.3 73.9 - - + +
52E LEU* 1.3 69.0 + - - +
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Residues in contact with LEU 52 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50A MET* 4.1 23.6 - - + -
48E ILE* 3.2 25.4 + - + +
49E VAL* 3.6 33.4 - - + +
50E MET 3.2 4.6 - - - -
51E LEU* 1.3 84.5 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il