Contacts of the helix formed by residues 93 - 132 (chain A) in PDB entry 2BAM
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 93 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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77A GLU* 3.2 5.8 - - - -
78A LYS* 2.9 42.7 + - + +
80A LEU* 4.1 25.7 - - + +
92A PRO* 1.3 73.5 - - - +
94A ASP* 1.4 64.0 + - - +
95A VAL 3.4 21.5 - - - +
96A TYR* 4.1 12.3 - - + -
109A GLY* 3.8 19.5 - - - -
110A MET 4.1 7.0 - - - +
111A GLU* 4.0 8.1 - - - +
126A LYS* 3.4 32.1 - - + -
127A LEU* 4.2 16.8 - - + -
136A ILE* 4.7 2.0 - - + -
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Residues in contact with ASP 94 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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65A TYR* 2.9 21.8 + - - +
76A ARG* 3.0 16.7 + - - -
77A GLU* 2.8 28.4 + - - +
93A ILE* 1.4 72.0 - - - +
95A VAL* 1.3 66.1 + - + +
110A MET 3.4 10.1 + - - +
111A GLU* 2.9 15.8 + - - +
112A PHE 2.7 21.8 + - - +
501A CA 2.6 21.6 - - - -
502A CA 2.5 28.3 - - - -
5D G 3.0 3.5 + - - -
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Residues in contact with VAL 95 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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65A TYR* 3.9 15.7 - - + -
68A LEU* 4.2 18.2 - - + -
69A GLU* 5.5 1.3 - - + -
74A TRP* 3.7 34.3 - - + -
75A TYR 3.2 20.0 - - - +
76A ARG* 4.2 9.2 - - + -
93A ILE* 3.4 7.4 + - - +
94A ASP* 1.3 92.5 - - + +
96A TYR* 1.3 64.9 + - - +
110A MET* 2.9 47.3 + - + +
111A GLU* 5.4 0.2 - - - -
112A PHE* 5.5 1.3 - - + +
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Residues in contact with TYR 96 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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74A TRP* 3.8 3.4 - - - -
75A TYR* 2.7 42.9 + + + +
78A LYS* 3.6 53.4 + - + -
80A LEU* 6.0 0.4 - - + -
93A ILE* 4.1 5.8 - - + -
95A VAL* 1.3 79.4 - - - +
97A LYS* 1.3 61.8 + - - +
98A GLU* 2.7 43.3 + - + -
107A ARG* 3.4 24.6 - - + +
108A VAL 3.2 13.9 - - - -
135A GLU* 3.8 8.3 + - + -
136A ILE* 3.6 32.5 - - + -
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Residues in contact with LYS 97 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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24A GLN* 4.4 4.2 - - - +
28A GLU* 3.1 22.8 + - - -
72A TYR* 2.7 31.3 + - - +
73A ASN* 4.1 11.8 + - - +
74A TRP* 3.6 26.0 - - + +
75A TYR* 4.9 0.4 - - - +
96A TYR* 1.3 84.2 - - - +
98A GLU* 1.3 74.9 + - - +
99A PHE* 3.5 39.5 - - + -
107A ARG* 3.5 2.8 - - - +
108A VAL 3.0 30.7 + - - +
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Residues in contact with GLU 98 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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96A TYR* 2.7 40.0 + - + +
97A LYS* 1.3 84.3 - - - +
99A PHE* 1.3 62.2 + - - +
100A ILE* 3.7 19.2 + - + +
105A LEU* 3.7 25.7 - - + +
106A LYS 3.5 4.5 - - - -
107A ARG* 4.2 11.6 - - + +
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Residues in contact with PHE 99 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21A LEU* 3.2 41.3 - - + +
24A GLN* 3.8 17.9 - - - -
25A ALA* 3.5 36.6 - - + -
28A GLU* 3.8 15.9 - - - -
74A TRP* 3.6 16.8 - + - -
97A LYS* 3.5 53.4 - - + +
98A GLU* 1.3 72.1 - - - +
100A ILE* 1.3 59.7 + - - +
105A LEU* 3.5 1.4 - - - -
106A LYS* 2.7 46.7 + - + +
108A VAL* 4.2 11.0 - - + -
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Residues in contact with ILE 100 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21A LEU* 4.2 6.5 - - - +
98A GLU* 3.7 21.4 + - + +
99A PHE* 1.3 73.8 - - - +
101A GLU* 1.3 70.0 + - - +
102A ASN 4.5 10.3 - - - +
103A SER 5.6 0.9 - - - -
104A GLU 3.5 12.1 - - - +
105A LEU* 3.4 27.4 - - + -
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Residues in contact with GLU 101 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A LYS* 4.0 27.4 + - - +
21A LEU* 3.5 31.1 - - + +
100A ILE* 1.3 79.3 - - - +
102A ASN* 1.3 88.0 + - - +
104A GLU* 2.9 28.0 + - + +
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Residues in contact with ASN 102 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100A ILE* 4.5 9.4 - - - +
101A GLU* 1.3 102.9 + - - +
103A SER* 1.3 84.7 + - - +
104A GLU* 3.6 12.4 + - - +
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Residues in contact with SER 103 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100A ILE* 5.6 0.7 - - - -
102A ASN* 1.3 92.7 + - - +
104A GLU* 1.3 60.0 + - - -
105A LEU* 3.7 4.9 + - - +
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Residues in contact with GLU 104 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19A ASP* 2.9 38.1 - - - +
21A LEU* 3.2 20.5 - - + +
99A PHE 4.0 0.3 - - - +
100A ILE* 3.5 7.3 - - - +
101A GLU* 2.9 38.1 + - + +
102A ASN* 3.6 10.7 + - - +
103A SER* 1.3 78.8 - - - +
105A LEU* 1.3 63.1 + - - +
106A LYS* 3.5 19.6 - - - +
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Residues in contact with LEU 105 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98A GLU* 3.7 31.9 - - + +
99A PHE 3.5 4.0 - - - +
100A ILE* 3.4 33.9 - - + -
103A SER 3.7 4.8 + - - +
104A GLU* 1.3 76.9 - - - +
106A LYS* 1.3 83.0 + - - +
107A ARG* 4.2 22.8 + - + +
137A ASP* 4.2 8.0 - - - +
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Residues in contact with LYS 106 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A LEU* 4.2 17.5 - - + -
19A ASP* 3.8 21.0 + - - +
21A LEU* 4.2 4.3 - - + -
22A ILE* 3.9 26.9 - - + -
98A GLU* 3.5 2.1 - - - -
99A PHE* 2.7 54.4 + - + +
104A GLU* 3.5 35.9 + - - +
105A LEU* 1.3 82.9 + - - +
107A ARG* 1.3 62.3 + - - +
137A ASP* 3.9 20.2 + - + -
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Residues in contact with ARG 107 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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96A TYR* 3.4 24.9 - - + +
97A LYS 3.5 4.3 - - - -
98A GLU* 4.2 11.4 - - + +
105A LEU* 4.2 23.9 + - + +
106A LYS* 1.3 76.9 - - - +
108A VAL* 1.3 61.8 + - - +
134A GLY* 2.7 34.6 + - - -
135A GLU* 3.2 29.7 + - - +
136A ILE* 3.5 2.9 + - - +
137A ASP* 2.6 68.0 + - - +
138A LEU 3.2 5.0 + - - -
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Residues in contact with VAL 108 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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22A ILE* 4.1 10.1 - - + -
25A ALA* 4.0 21.1 - - + -
74A TRP* 3.8 27.4 - - + -
96A TYR* 3.2 7.0 - - - -
97A LYS 3.0 29.2 + - - -
99A PHE* 4.2 10.1 - - + -
106A LYS 5.0 0.2 - - - -
107A ARG* 1.3 77.6 - - - +
109A GLY* 1.3 72.4 + - - +
110A MET* 4.8 0.4 - - + -
136A ILE* 4.2 2.5 - - - -
138A LEU* 3.5 27.8 - - + +
140A ILE* 3.9 22.0 - - + -
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Residues in contact with GLY 109 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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93A ILE* 3.8 15.7 - - - -
95A VAL 3.7 5.4 - - - -
108A VAL* 1.3 78.6 - - - +
110A MET* 1.3 62.8 + - - +
127A LEU* 3.7 7.9 - - - -
136A ILE* 3.7 17.4 - - - +
138A LEU 2.8 11.4 + - - +
139A ALA* 3.2 4.0 - - - -
140A ILE 3.1 19.8 + - - -
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Residues in contact with MET 110 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A VAL* 3.2 40.6 - - + -
68A LEU* 4.9 6.7 - - - -
74A TRP* 4.2 18.2 - - + -
93A ILE* 4.1 3.3 - - - +
94A ASP* 3.4 6.4 + - - +
95A VAL* 2.9 49.8 + - + +
109A GLY* 1.3 74.1 - - - +
111A GLU* 1.3 74.0 + - - +
112A PHE* 5.7 0.2 - - + -
127A LEU* 3.8 7.3 - - - +
140A ILE* 3.2 40.8 - - + +
142A LEU* 3.4 22.7 - - + -
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Residues in contact with GLU 111 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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92A PRO 5.0 1.0 - - - +
93A ILE* 4.0 9.2 - - - +
94A ASP* 3.1 30.4 + - - -
110A MET* 1.3 81.4 - - - +
112A PHE* 1.3 59.0 + - - +
113A GLU* 3.8 9.4 - - + +
123A SER* 3.1 42.1 + - - +
126A LYS* 5.5 2.4 + - - +
127A LEU* 4.2 15.9 - - + +
140A ILE 2.9 4.2 + - - +
141A ILE* 3.2 7.8 - - + +
142A LEU 2.9 23.7 + - - -
501A CA 2.8 22.2 - - - -
4D G 5.1 0.4 - - - +
5D G 2.8 14.8 + - - -
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Residues in contact with PHE 112 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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33A ILE* 3.6 33.7 - - + -
60A ILE* 3.8 12.8 - - + -
61A LYS* 3.4 41.3 - - + -
64A CYS* 4.3 11.0 - - + -
65A TYR* 3.7 22.9 - + + +
94A ASP* 2.7 8.5 + - - +
95A VAL* 5.8 1.1 - - + -
110A MET* 4.6 1.1 - - + +
111A GLU* 1.3 73.2 - - - +
113A GLU* 1.3 57.9 + - - +
114A THR* 3.2 43.4 + - + -
142A LEU* 3.6 18.8 - - + -
179A PHE* 3.7 9.9 - + - -
501A CA 2.4 31.0 - - - -
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Residues in contact with GLU 113 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111A GLU* 3.8 13.6 - - + +
112A PHE* 1.3 76.5 - - - +
114A THR* 1.3 61.0 + - - +
115A GLY* 3.1 25.3 + - - -
119A SER* 2.9 27.2 + - - +
120A ALA* 3.8 19.1 - - + -
123A SER* 2.5 31.3 + - - +
141A ILE* 4.6 6.5 - - + -
142A LEU 2.5 17.6 + - - +
143A MET* 3.5 5.2 - - + +
144A PRO* 3.2 24.8 - - - +
157A THR* 3.6 22.2 + - + +
501A CA 4.5 2.0 - - - -
5D G 3.8 3.1 + - - +
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Residues in contact with THR 114 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57A VAL* 3.2 42.7 + - + +
60A ILE* 4.5 6.3 - - + -
61A LYS* 3.3 10.2 + - - -
112A PHE* 3.2 36.8 + - + -
113A GLU* 1.3 78.3 - - - +
115A GLY* 1.3 65.0 + - - +
144A PRO* 4.1 17.0 - - + -
156A VAL* 3.6 14.9 - - - +
157A THR* 4.9 0.4 - - - -
179A PHE* 4.2 4.3 - - + -
6D A 3.2 20.2 + - - +
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Residues in contact with GLY 115 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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113A GLU* 3.1 12.1 + - - -
114A THR* 1.3 81.0 - - - +
116A ASN* 1.3 64.3 + - - +
119A SER* 4.3 4.5 - - - -
156A VAL* 3.4 4.2 - - - -
157A THR* 2.8 26.1 + - - -
5D G 4.2 16.1 - - - -
6D A 3.6 13.7 + - - -
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Residues in contact with ASN 116 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115A GLY* 1.3 74.6 - - - +
117A ILE* 1.3 78.7 + - - +
118A SER* 2.9 29.1 + - - +
119A SER* 2.7 32.5 + - - +
155A ARG* 3.4 16.7 + - - +
156A VAL* 4.1 1.3 - - - +
157A THR* 3.2 3.8 + - - -
118B SER* 5.1 1.1 - - - +
122B ARG* 4.6 1.6 + - - -
5C G 2.9 33.6 + - - +
6C A 3.7 6.4 - - - +
6D A 4.1 18.9 + - - +
7D T 3.0 24.7 + - - +
8D C 4.0 0.2 - - - +
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Residues in contact with ILE 117 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115A GLY 3.5 1.0 + - - -
116A ASN* 1.3 83.0 + - - +
118A SER* 1.3 62.9 + - - +
120A ALA* 3.1 11.8 + - + +
121A HIS* 3.3 16.1 - - - +
155A ARG* 2.9 38.9 + - - +
156A VAL 4.2 7.2 - - - +
157A THR* 3.6 19.2 - - + +
158A ASN 4.1 7.6 - - - +
161A GLU* 3.6 24.2 - - + +
162A LEU* 3.8 39.0 - - + +
122B ARG* 3.8 17.5 - - - +
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Residues in contact with SER 118 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116A ASN* 2.9 21.3 + - - -
117A ILE* 1.3 78.9 - - - +
119A SER* 1.3 60.1 + - - +
121A HIS* 3.2 22.5 + - - +
122A ARG 3.6 1.9 + - - -
116B ASN* 5.2 1.7 - - - +
118B SER* 3.0 35.5 + - - +
119B SER* 3.6 30.0 + - - -
122B ARG* 3.9 18.5 + - - +
5C G 5.3 1.4 + - - -
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Residues in contact with SER 119 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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113A GLU* 2.9 25.3 + - - +
115A GLY* 4.3 3.0 - - - -
116A ASN* 2.7 24.9 + - - -
118A SER* 1.3 82.6 + - - +
120A ALA* 1.3 58.4 + - - -
122A ARG* 3.1 29.8 + - - +
123A SER* 3.1 15.4 + - - -
118B SER* 3.6 13.9 - - - -
5D G 3.4 13.5 + - - -
6D A 6.1 0.4 - - - -
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Residues in contact with ALA 120 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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113A GLU* 3.5 16.5 + - + -
116A ASN 3.4 1.8 + - - -
117A ILE* 3.1 14.1 + - + +
119A SER* 1.3 78.0 - - - +
121A HIS* 1.3 59.5 + - - +
123A SER* 3.3 2.7 + - - -
124A MET* 2.9 27.9 + - - +
141A ILE* 4.3 3.9 - - + +
143A MET* 5.4 0.2 - - - -
157A THR* 3.5 31.9 - - + +
162A LEU* 4.0 19.5 - - + +
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Residues in contact with HIS 121 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117A ILE* 3.3 31.7 + - - +
118A SER* 3.2 12.5 + - - +
120A ALA* 1.3 77.6 - - - +
122A ARG* 1.3 57.9 + - - +
124A MET* 3.3 7.0 + - - +
125A ASN* 2.9 34.1 + - - -
161A GLU 5.2 0.6 + - - -
162A LEU* 3.7 17.2 - - + +
165A TYR* 3.3 46.8 - + - -
121B HIS* 3.8 16.8 - - + -
122B ARG* 3.8 33.9 - - + +
125B ASN* 3.5 20.7 + - - +
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Residues in contact with ARG 122 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118A SER 3.6 4.6 + - - +
119A SER* 3.1 37.2 + - - +
121A HIS* 1.3 78.9 - - - +
123A SER* 1.3 52.5 + - - +
125A ASN* 3.1 2.9 + - - +
126A LYS* 2.8 40.1 + - - +
116B ASN* 4.6 2.4 + - - -
117B ILE* 4.0 20.3 - - - +
118B SER* 3.7 19.6 - - - +
121B HIS* 3.5 41.0 - - - +
165B TYR* 4.3 10.4 - - - +
4D G 3.3 63.2 + - - +
5D G 4.3 14.5 + - - -
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Residues in contact with SER 123 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111A GLU* 3.1 37.4 + - - +
113A GLU* 2.5 29.6 + - - -
119A SER 3.1 2.2 + - - -
120A ALA* 3.4 10.8 - - - -
121A HIS 3.3 0.2 - - - -
122A ARG* 1.3 81.3 + - - +
124A MET* 1.3 60.6 + - - +
126A LYS* 3.5 7.3 + - - +
127A LEU* 3.2 29.5 + - - +
141A ILE* 4.4 5.6 - - - -
5D G 4.4 2.1 + - - -
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Residues in contact with MET 124 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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120A ALA 2.9 16.5 + - - +
121A HIS* 3.6 3.1 - - - +
123A SER* 1.3 76.5 - - - +
125A ASN* 1.3 59.8 + - - +
127A LEU* 3.4 3.6 + - - +
128A LEU* 2.9 45.1 + - + +
141A ILE* 3.8 14.5 - - + +
162A LEU* 4.3 14.1 - - + -
165A TYR* 4.0 36.1 - - + +
168A LEU* 4.8 4.9 - - + -
169A THR* 3.9 15.7 - - - +
174A PHE* 4.0 14.2 - - + -
176A PHE* 4.0 16.4 - - - -
125B ASN* 3.7 27.8 - - - +
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Residues in contact with ASN 125 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121A HIS 2.9 15.7 + - - +
122A ARG 3.6 3.8 - - - +
124A MET* 1.3 76.2 - - - +
126A LYS* 1.3 60.5 + - - +
128A LEU* 3.5 20.7 - - - +
129A LEU* 2.8 29.8 + - - +
121B HIS* 3.3 31.5 - - + +
124B MET* 3.7 6.5 - - - +
125B ASN* 3.3 37.3 + - - +
165B TYR* 3.9 4.7 - - + -
168B LEU* 3.6 23.9 - - + +
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Residues in contact with LYS 126 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A LEU* 3.5 15.6 - - + +
83A LEU* 3.6 9.2 - - + -
91A GLY 3.1 24.4 + - - +
92A PRO 3.1 14.1 + - - +
93A ILE* 3.4 30.5 - - + -
111A GLU* 5.5 3.1 + - - +
122A ARG* 2.8 27.3 + - - +
123A SER* 3.8 7.0 - - - +
125A ASN* 1.3 72.9 - - - +
127A LEU* 1.3 58.2 + - - +
129A LEU* 3.2 5.7 + - - +
130A GLY 2.9 23.2 + - - -
165B TYR* 3.2 28.0 - - - +
4D G 2.9 33.5 + - - -
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Residues in contact with LEU 127 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A LEU* 5.4 0.2 - - - -
93A ILE* 4.2 19.7 - - + -
109A GLY* 3.7 28.5 - - - -
110A MET* 3.8 5.4 - - - +
111A GLU* 4.2 8.1 - - + +
123A SER 3.2 17.8 + - - +
124A MET 3.7 3.8 - - - +
126A LYS* 1.3 76.2 - - - +
128A LEU* 1.3 61.0 + - - +
130A GLY* 4.3 0.7 - - - +
131A LEU* 2.9 34.1 + - - +
136A ILE* 3.7 16.8 - - + +
139A ALA* 3.7 13.9 - - + -
140A ILE 3.9 10.5 - - - +
141A ILE* 3.7 16.8 - - + -
174A PHE* 3.5 23.1 - - + -
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Residues in contact with LEU 128 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124A MET* 2.9 39.4 + - + +
125A ASN* 3.3 26.9 + - - +
127A LEU* 1.3 72.5 - - - +
129A LEU* 1.3 61.2 + - - +
131A LEU* 3.6 5.0 - - + +
132A LYS* 2.9 38.0 + - + +
168A LEU* 4.0 17.3 - - + +
169A THR* 3.7 35.7 - - + +
172A GLN* 3.9 13.4 + - + +
174A PHE* 3.9 8.1 - - + -
168B LEU* 4.3 14.4 - - + -
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Residues in contact with LEU 129 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A LEU* 5.2 0.2 - - + -
82A ILE* 4.5 9.0 - - + -
83A LEU* 3.8 25.6 - - + -
87A LYS* 4.5 2.0 - - - +
125A ASN 2.8 9.0 + - - +
126A LYS* 3.3 9.6 - - - +
128A LEU* 1.3 77.1 - - - +
130A GLY* 1.3 61.4 + - - +
132A LYS* 3.2 3.6 + - + +
133A HIS* 3.0 38.9 + - + +
164B PRO 3.9 10.8 - - - +
165B TYR* 3.6 29.6 - - + -
167B GLU* 3.6 38.8 - - + +
168B LEU* 3.8 21.3 - - + -
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Residues in contact with GLY 130 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A LEU* 4.0 22.8 - - - +
82A ILE* 4.9 3.4 - - - -
126A LYS 2.9 14.0 + - - -
127A LEU 3.3 4.0 + - - -
128A LEU 3.3 0.2 - - - -
129A LEU* 1.3 78.1 - - - +
131A LEU* 1.3 56.7 + - - +
133A HIS* 3.8 1.2 + - - -
134A GLY 3.5 1.9 + - - -
135A GLU* 2.9 32.7 + - - +
136A ILE* 3.4 13.8 + - - -
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Residues in contact with LEU 131 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127A LEU 2.9 20.2 + - - +
128A LEU* 3.6 6.7 - - + +
129A LEU 3.2 0.2 - - - -
130A GLY* 1.3 76.7 - - - +
132A LYS* 1.3 64.1 + - - +
134A GLY* 3.2 12.6 + - - -
136A ILE* 3.3 31.2 - - + +
137A ASP* 3.7 21.8 - - - +
138A LEU 3.9 3.6 - - - +
139A ALA* 3.6 21.1 - - + -
172A GLN* 3.5 32.9 - - + +
173A PRO* 3.8 19.3 - - + +
174A PHE* 3.8 12.8 - - + -
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Residues in contact with LYS 132 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A LEU* 2.9 17.5 + - + +
129A LEU* 3.2 5.4 + - - +
131A LEU* 1.3 76.5 - - - +
133A HIS* 1.3 63.9 + - + +
134A GLY 3.2 3.2 + - - -
172A GLN* 3.7 17.7 - - - +
167B GLU* 3.0 49.3 + - - +
168B LEU* 3.6 25.9 - - + +
170B GLU* 4.0 17.5 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il