Contacts of the helix formed by residues 8 - 34 (chain Q) in PDB entry 2BKC


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASP 8 (chain Q).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    122B  LYS*     3.5    30.3    -      -       +      +
      7Q  VAL*     1.3    74.9    -      -       -      +
      9Q  THR*     1.3    66.9    +      -       -      +
     10Q  LYS*     3.6    14.3    +      -       -      +
     11Q  GLU*     3.1    31.9    +      -       -      +
     12Q  PHE*     3.0    21.7    +      -       -      +
    119Q  LEU*     3.8     3.6    -      -       -      -
    123Q  GLU*     3.2    21.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with THR 9 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      8Q  ASP*     1.3    77.5    -      -       -      +
     10Q  LYS*     1.3    62.7    +      -       -      +
     12Q  PHE*     3.4     2.6    +      -       +      +
     13Q  LEU*     3.0    24.0    +      -       +      +
     67Q  ILE*     4.0    13.9    -      -       +      -
    119Q  LEU*     4.1     8.6    -      -       -      +
    120Q  THR*     3.4    24.9    +      -       -      +
    123Q  GLU*     2.9    32.7    +      -       -      +
    125Q  ASP*     3.5    27.3    -      -       -      +
    128Q  THR*     4.0    12.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 10 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      8Q  ASP*     3.2    13.5    +      -       -      +
      9Q  THR*     1.3    78.5    -      -       -      +
     11Q  GLU*     1.3    62.7    +      -       +      +
     13Q  LEU*     3.2     4.3    +      -       -      +
     14Q  ASN*     3.0    24.8    +      -       -      +
     64Q  LEU*     3.7    25.9    -      -       +      +
     67Q  ILE*     3.0    40.1    +      -       +      +
     68Q  GLY*     3.4    15.5    +      -       -      +
     69Q  GLY*     4.3    10.5    -      -       -      -
    155U  LEU*     5.5     3.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 11 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    122B  LYS*     5.8     0.2    +      -       -      -
      7Q  VAL*     3.4    27.0    -      -       +      +
      8Q  ASP*     3.1    36.0    +      -       -      +
     10Q  LYS*     1.3    78.9    -      -       +      +
     12Q  PHE*     1.3    58.6    +      -       -      +
     14Q  ASN*     3.8     6.5    -      -       -      +
     15Q  HIS*     2.9    29.6    +      -       -      +
     72Q  PHE*     5.8     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 12 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7Q  VAL*     5.1     9.5    -      -       +      +
      8Q  ASP      3.0    16.8    +      -       -      +
      9Q  THR*     3.7     4.0    -      -       +      +
     11Q  GLU*     1.3    74.8    -      -       -      +
     13Q  LEU*     1.3    76.6    +      -       +      +
     15Q  HIS*     3.3     7.4    +      -       +      +
     16Q  GLN*     3.1    56.4    +      -       +      +
    112Q  GLU*     3.1    32.5    -      -       +      -
    113Q  TYR*     4.1     6.1    -      +       -      -
    115Q  GLN*     4.6     4.5    -      -       +      -
    116Q  GLY*     3.6    25.4    -      -       -      -
    119Q  LEU*     3.7    17.5    -      -       +      -
    132Q  LEU*     4.1    21.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 13 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9Q  THR*     3.0    17.0    +      -       +      +
     10Q  LYS      3.6     4.0    -      -       -      +
     12Q  PHE*     1.3    92.4    -      -       +      +
     14Q  ASN*     1.3    56.6    +      -       -      +
     16Q  GLN*     3.0     4.5    +      -       +      +
     17Q  VAL*     2.9    24.3    +      -       -      +
     60Q  VAL*     3.3    28.4    -      -       +      +
     63Q  ARG*     4.1     6.5    -      -       +      -
     64Q  LEU*     3.9    35.4    -      -       +      +
     67Q  ILE*     4.0    19.1    -      -       +      -
    128Q  THR*     3.6    34.5    -      -       +      -
    131Q  MET*     4.5     6.3    -      -       +      -
    132Q  LEU*     4.4    12.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 14 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10Q  LYS      3.0    16.8    +      -       -      +
     11Q  GLU*     3.8     7.4    -      -       -      +
     13Q  LEU*     1.3    72.5    -      -       -      +
     15Q  HIS*     1.3    67.8    +      -       -      +
     17Q  VAL*     3.2    11.3    +      -       -      +
     18Q  ALA      3.1    17.8    +      -       -      -
     64Q  LEU*     3.7    11.2    -      -       +      +
     70Q  SER      3.3    20.2    +      -       -      -
     71Q  PRO*     3.3     5.9    -      -       -      +
     72Q  PHE*     2.8    67.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 15 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11Q  GLU      2.9    19.7    +      -       -      +
     12Q  PHE*     3.5     9.2    -      -       +      +
     13Q  LEU      3.3     0.2    -      -       -      -
     14Q  ASN*     1.3    76.4    -      -       -      +
     16Q  GLN*     1.3    62.4    +      -       -      +
     18Q  ALA*     3.3     8.0    +      -       -      +
     19Q  ASN*     3.0    29.8    +      -       -      -
     72Q  PHE*     4.4     5.1    -      -       -      -
     81Q  ASN*     2.7    32.2    +      -       +      -
     82Q  ALA      4.0     0.2    -      -       -      -
     83Q  SER*     3.0    39.9    +      -       -      -
    112Q  GLU*     3.3    19.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLN 16 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12Q  PHE*     3.1    53.7    +      -       +      +
     13Q  LEU*     3.0    10.3    +      -       +      +
     15Q  HIS*     1.3    82.2    +      -       -      +
     17Q  VAL*     1.3    66.2    +      -       -      +
     18Q  ALA      3.1     1.3    -      -       -      -
     19Q  ASN*     3.0    25.7    +      -       -      +
     20Q  LEU*     2.9    41.2    +      -       +      +
     60Q  VAL*     4.4     8.5    -      -       +      -
    109Q  LEU*     4.0     3.5    -      -       -      +
    112Q  GLU*     3.1    23.9    +      -       -      +
    113Q  TYR*     3.7    25.5    -      -       +      +
    132Q  LEU*     5.8     0.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 17 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13Q  LEU      2.9    19.4    +      -       -      +
     14Q  ASN*     3.2    21.3    +      -       -      +
     16Q  GLN*     1.3    76.8    -      -       -      +
     18Q  ALA*     1.3    62.5    +      -       -      +
     20Q  LEU*     4.1     1.8    -      -       -      +
     21Q  ASN*     3.0    34.4    +      -       -      +
     57Q  MET*     4.2    10.3    -      -       -      +
     60Q  VAL*     3.7    17.9    -      -       +      +
     61Q  ALA*     4.2    17.7    -      -       +      -
     64Q  LEU*     4.7     2.2    -      -       +      -
     71Q  PRO*     4.5     5.4    -      -       +      -
     72Q  PHE*     3.9    22.7    -      -       +      +
     78Q  PHE*     3.9    11.2    -      -       +      -
     32S  TRP*     4.4    12.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 18 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     14Q  ASN      3.1    10.6    +      -       -      +
     15Q  HIS      3.4     9.2    -      -       -      +
     16Q  GLN      3.1     0.6    -      -       -      -
     17Q  VAL*     1.3    76.3    -      -       -      +
     19Q  ASN*     1.3    66.0    +      -       -      +
     20Q  LEU      3.2     0.9    +      -       -      -
     21Q  ASN*     3.5     2.8    +      -       -      +
     22Q  VAL*     3.3    24.6    +      -       -      +
     72Q  PHE*     4.4     2.9    -      -       +      -
     78Q  PHE*     3.7    38.5    -      -       +      +
     81Q  ASN*     4.1    11.7    -      -       +      -
     82Q  ALA*     4.0    13.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 19 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15Q  HIS*     3.0    14.2    +      -       -      +
     16Q  GLN*     3.0    25.1    +      -       -      +
     18Q  ALA*     1.3    76.6    -      -       -      +
     20Q  LEU*     1.3    58.9    +      -       +      +
     22Q  VAL*     3.4     3.6    +      -       -      +
     23Q  PHE*     3.0    27.5    +      -       -      +
     82Q  ALA*     3.6     5.2    -      -       -      -
     83Q  SER*     2.9    34.9    +      -       -      -
     84Q  VAL*     3.2    22.6    +      -       +      +
    108Q  LEU*     4.3     1.4    -      -       -      +
    109Q  LEU*     3.9    12.5    -      -       +      +
    112Q  GLU*     3.0    29.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 20 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16Q  GLN*     2.9    27.9    +      -       +      +
     17Q  VAL      4.8     0.2    -      -       -      +
     19Q  ASN*     1.3    75.3    -      -       -      +
     21Q  ASN*     1.3    56.6    +      -       -      +
     23Q  PHE*     3.5     6.2    -      -       +      +
     24Q  THR*     2.7    37.5    +      -       -      -
     53Q  PHE*     4.1    31.4    -      -       +      +
     56Q  GLN*     4.6     2.2    -      -       -      +
     57Q  MET*     3.8    35.4    -      -       +      +
     60Q  VAL*     4.3     9.9    -      -       +      -
    109Q  LEU*     3.9    32.8    -      -       +      -
    113Q  TYR*     3.4    25.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 21 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17Q  VAL*     3.0    22.6    +      -       -      +
     18Q  ALA      4.0     4.0    -      -       -      +
     20Q  LEU*     1.3    75.4    -      -       -      +
     22Q  VAL*     1.3    63.1    +      -       -      +
     24Q  THR*     3.6    12.4    -      -       -      +
     25Q  VAL*     3.4    26.7    +      -       -      +
     57Q  MET*     3.7    33.7    -      -       -      +
     78Q  PHE*     3.3    48.4    -      -       +      -
     25S  VAL*     4.1    12.5    -      -       -      +
     28S  HIS*     5.5     1.2    -      -       -      -
     32S  TRP*     5.1     0.4    -      -       -      -
     50S  TYR*     5.6     1.0    +      -       -      -
     75S  LEU*     4.1     4.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 22 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     18Q  ALA      3.3    15.2    +      -       -      +
     19Q  ASN      3.7     7.4    -      -       -      +
     21Q  ASN*     1.3    75.6    -      -       -      +
     23Q  PHE*     1.3    58.3    +      -       -      +
     25Q  VAL*     3.4     4.5    +      -       -      +
     26Q  LYS*     3.0    25.2    +      -       -      +
     78Q  PHE      4.5     5.4    -      -       -      +
     79Q  LEU*     5.2     5.6    -      -       +      -
     82Q  ALA*     3.7    18.4    -      -       +      -
     84Q  VAL*     3.4    34.5    -      -       +      +
     85Q  GLU      4.6     0.4    -      -       -      +
     86Q  GLU*     4.1    30.5    -      -       +      +
     75S  LEU*     4.2    23.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 23 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19Q  ASN      3.0    17.4    +      -       -      +
     20Q  LEU*     3.2     8.5    +      -       +      +
     22Q  VAL*     1.3    74.2    -      -       -      +
     24Q  THR*     1.3    68.4    +      -       -      +
     26Q  LYS*     3.1    13.2    +      -       +      +
     27Q  ILE*     3.0    37.2    +      -       +      +
     49Q  LEU*     5.2     0.4    -      -       +      -
     53Q  PHE*     3.7    47.8    -      +       +      -
     84Q  VAL*     4.7     4.5    -      -       +      -
    102Q  LEU*     3.7    22.7    -      -       +      -
    105Q  THR*     3.4    32.8    -      -       +      -
    106Q  LEU*     3.6    21.3    -      -       +      -
    109Q  LEU*     3.7    20.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 24 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20Q  LEU      2.7    20.9    +      -       -      -
     21Q  ASN*     3.6    19.1    -      -       -      +
     23Q  PHE*     1.3    76.5    -      -       -      +
     25Q  VAL*     1.3    67.9    +      -       +      +
     27Q  ILE*     3.2    18.9    +      -       -      +
     28Q  HIS      3.3     8.8    +      -       -      -
     50Q  TYR*     3.5    40.6    +      -       +      +
     53Q  PHE*     4.5     4.4    -      -       -      +
     54Q  GLY*     4.1    22.9    +      -       -      -
     57Q  MET*     5.8     3.1    -      -       +      +
     50S  TYR*     5.7     3.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 25 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     21Q  ASN      3.4     8.6    +      -       -      +
     22Q  VAL      3.9     3.1    -      -       -      +
     23Q  PHE      3.3     0.4    -      -       -      -
     24Q  THR*     1.3    80.9    -      -       +      +
     26Q  LYS*     1.3    65.7    +      -       -      +
     28Q  HIS*     3.3    12.1    +      -       +      +
     29Q  GLN*     3.0    20.3    +      -       -      +
     32Q  TRP*     6.0     0.7    -      -       +      -
     86Q  GLU*     4.7     1.6    -      -       -      +
     21S  ASN*     4.3    10.1    -      -       -      +
     73S  SER*     3.3    29.8    -      -       -      +
     74S  THR*     3.7     7.6    -      -       -      +
     75S  LEU*     3.5    26.5    -      -       +      -
     78S  PHE*     3.6    25.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 26 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22Q  VAL*     3.0    16.2    +      -       +      +
     23Q  PHE*     3.1    11.6    +      -       +      +
     25Q  VAL*     1.3    76.0    -      -       -      +
     27Q  ILE*     1.3    66.0    +      -       -      +
     29Q  GLN*     3.2    19.7    +      -       -      +
     30Q  ILE*     3.1    35.6    +      -       +      +
     84Q  VAL*     4.3    10.8    -      -       -      -
     85Q  GLU*     2.6    31.3    +      -       -      +
     86Q  GLU*     4.1    11.9    -      -       +      +
     87Q  ALA      5.0     2.0    -      -       -      +
    101Q  ASP*     2.7    36.6    +      -       -      +
    102Q  LEU*     5.3     0.4    -      -       -      -
    105Q  THR*     3.7    27.6    -      -       +      +
     73S  SER      5.2     1.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 27 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23Q  PHE*     3.0    57.8    +      -       +      +
     24Q  THR*     3.2    11.6    +      -       -      +
     26Q  LYS*     1.3    77.1    -      -       -      +
     28Q  HIS*     1.3    64.0    +      -       -      +
     30Q  ILE*     3.2    11.0    +      -       +      +
     31Q  HIS*     3.1    20.4    +      -       +      +
     46Q  MET*     3.3    43.9    -      -       +      +
     49Q  LEU*     4.1    32.1    -      -       +      +
     50Q  TYR*     3.9    13.0    -      -       +      +
     53Q  PHE*     4.5     3.4    -      -       +      -
    102Q  LEU*     5.2     3.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 28 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24Q  THR*     3.3     4.0    +      -       +      +
     25Q  VAL*     3.7    13.7    -      -       +      +
     26Q  LYS      3.3     0.2    -      -       -      -
     27Q  ILE*     1.3    79.7    -      -       -      +
     29Q  GLN*     1.3    53.3    +      -       -      +
     31Q  HIS*     3.1    12.5    +      +       -      +
     32Q  TRP*     2.7    64.9    +      +       +      -
     47Q  ASP*     5.6     4.7    -      -       -      -
     50Q  TYR*     3.1    56.4    +      +       +      +
     21S  ASN*     5.6     0.4    -      -       -      -
     54S  GLY      5.6     1.0    +      -       -      -
     57S  MET*     3.6    27.7    -      -       +      +
     58S  ASP*     3.3    25.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 29 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25Q  VAL      3.0    14.4    +      -       -      +
     26Q  LYS*     3.5    25.1    -      -       -      +
     27Q  ILE      3.2     0.2    -      -       -      -
     28Q  HIS*     1.3    75.7    -      -       -      +
     30Q  ILE*     1.3    68.3    +      -       -      +
     32Q  TRP*     4.4     3.3    -      -       -      -
     33Q  TYR*     3.0    40.3    +      -       +      +
     86Q  GLU*     5.8     0.7    -      -       -      +
     87Q  ALA      2.9    27.2    +      -       -      +
     89Q  TYR*     4.1    19.2    +      -       +      +
     93Q  LYS*     6.3     0.8    -      -       -      +
     98Q  LEU*     5.2     5.0    -      -       +      +
    101Q  ASP*     5.2     4.9    +      -       -      -
     73S  SER*     2.9    44.7    +      -       -      +
     74S  THR*     3.8     1.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 30 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23Q  PHE*     6.3     0.4    -      -       +      -
     26Q  LYS*     3.1    39.9    +      -       +      +
     27Q  ILE*     3.2    10.1    +      -       +      +
     29Q  GLN*     1.3    81.8    -      -       -      +
     31Q  HIS*     1.3    55.3    +      -       -      +
     34Q  MET*     2.9    57.6    +      -       +      +
     46Q  MET*     3.8     9.2    -      -       -      -
     98Q  LEU*     3.7    45.4    -      -       +      +
     99Q  MET*     3.4    19.7    -      -       +      -
    101Q  ASP*     5.0     2.7    -      -       -      +
    102Q  LEU*     4.2    20.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 31 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27Q  ILE*     3.1    12.6    +      -       +      +
     28Q  HIS*     3.3    16.4    -      +       -      +
     30Q  ILE*     1.3    79.2    -      -       -      +
     32Q  TRP*     1.3    80.5    +      +       -      +
     34Q  MET*     3.3    23.1    +      -       -      +
     39Q  PHE*     4.4    11.5    -      +       -      -
     43Q  GLY*     3.1    42.9    +      -       -      -
     46Q  MET*     3.8    12.0    -      -       +      +
     47Q  ASP*     3.5    23.2    +      -       -      -
     58S  ASP*     4.7     4.4    +      -       -      -
     62S  GLU*     4.1    16.6    +      -       -      -
    144Y  TRP*     4.8    11.0    -      +       -      -
----------------------------------------------------------
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Residues in contact with TRP 32 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25Q  VAL*     6.0     0.4    -      -       +      -
     28Q  HIS*     2.7    46.3    +      +       +      +
     29Q  GLN      3.8     3.4    -      -       -      +
     31Q  HIS*     1.3    89.1    -      +       -      +
     33Q  TYR*     1.3    67.0    +      -       +      +
     34Q  MET      3.9     2.1    +      -       -      +
     17S  VAL*     4.3     5.4    -      -       +      -
     21S  ASN*     5.0     2.2    -      -       -      -
     57S  MET*     3.6    31.2    -      -       +      -
     58S  ASP*     3.7    18.1    +      -       -      -
     61S  ALA*     3.4    24.7    -      -       +      +
     62S  GLU*     4.9     5.8    -      -       +      +
     65S  LEU*     3.7    40.9    -      -       +      +
     71S  PRO*     3.7    22.0    -      -       +      -
     72S  PHE      3.3    24.0    -      -       -      -
     73S  SER*     4.0    18.4    -      -       -      -
     78S  PHE*     4.9     3.8    -      +       -      -
    144Y  TRP*     4.4     9.5    +      +       -      -
----------------------------------------------------------
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Residues in contact with TYR 33 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29Q  GLN*     3.0    28.7    +      -       +      +
     30Q  ILE*     3.7     1.6    -      -       -      -
     32Q  TRP*     1.3    78.9    -      -       +      +
     34Q  MET*     1.3    65.5    +      -       -      +
     35Q  ARG*     3.6    10.8    +      -       -      +
     89Q  TYR*     3.5    74.9    +      +       +      +
     93Q  LYS      5.6     0.7    -      -       -      +
     98Q  LEU*     4.4     5.6    -      -       +      +
     65S  LEU*     5.0     3.1    -      -       +      -
     69S  GLY      5.6     0.2    -      -       -      -
     70S  SER*     3.3    19.6    -      -       -      -
     71S  PRO*     2.3    61.0    +      -       +      -
     73S  SER*     3.7    14.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with MET 34 (chain Q). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30Q  ILE*     2.9    45.3    +      -       +      +
     31Q  HIS*     3.3    14.1    -      -       -      +
     32Q  TRP      3.6     2.9    -      -       -      +
     33Q  TYR*     1.3    79.8    -      -       -      +
     35Q  ARG*     1.3    64.4    -      -       -      +
     39Q  PHE*     3.5    28.8    -      -       +      +
     42Q  LEU*     3.8    10.8    -      -       +      -
     43Q  GLY*     3.5    30.5    -      -       -      -
     46Q  MET*     3.9    10.5    -      -       +      -
     95Q  MET*     3.5    36.6    -      -       +      -
     98Q  LEU*     3.9    10.5    -      -       +      -
     99Q  MET*     4.1     2.5    -      -       +      -
    144Y  TRP*     5.7     0.5    +      -       -      -
    148Y  ALA*     4.0     3.3    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il