Contacts of the helix formed by residues 94 - 123 (chain H) in PDB entry 2BKC


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with THR 94 (chain H).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     93H  LYS*     1.3    75.9    -      -       -      +
     95H  MET*     1.3    67.3    +      -       +      +
     96H  ASP*     3.5    28.8    -      -       +      +
     97H  GLN*     2.8    29.0    +      -       -      +
     98H  LEU*     3.2    23.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 95 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34H  MET*     3.3    58.1    -      -       +      -
     35H  ARG      3.6    30.6    +      -       -      +
     38H  ASN*     4.0    19.3    -      -       +      +
     39H  PHE      4.0    17.3    -      -       -      +
     42H  LEU*     3.8    22.2    -      -       +      -
     93H  LYS      3.9     0.6    +      -       -      -
     94H  THR*     1.3    75.6    -      -       +      +
     96H  ASP*     1.3    65.1    +      -       -      +
     98H  LEU*     3.6     9.3    +      -       -      +
     99H  MET*     3.0    35.8    +      -       +      +
    149H  PHE*     5.1     2.7    -      -       +      -
    150H  LEU*     5.7     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 96 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     94H  THR*     3.5    19.1    -      -       +      +
     95H  MET*     1.3    79.3    -      -       -      +
     97H  GLN*     1.3    58.3    +      -       +      +
     99H  MET*     3.2     3.8    +      -       -      +
    100H  GLU*     2.9    47.6    +      -       -      +
    149H  PHE*     5.8     1.6    -      -       -      -
    150H  LEU*     4.1    18.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 97 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     92H  PRO      4.3     1.7    -      -       -      +
     93H  LYS*     3.2    28.3    +      -       +      +
     94H  THR*     2.8    43.0    +      -       -      +
     96H  ASP*     1.3    77.1    -      -       +      +
     98H  LEU*     1.3    66.3    +      -       -      +
    100H  GLU*     3.3    15.2    +      -       -      +
    101H  ASP*     3.0    23.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 98 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29H  GLN*     5.2     7.9    -      -       +      +
     30H  ILE*     3.6    39.4    -      -       +      +
     33H  TYR*     4.7     5.2    -      -       +      +
     34H  MET*     4.3    28.9    -      -       +      +
     35H  ARG      5.4     0.4    -      -       -      +
     89H  TYR*     4.0    17.7    -      -       +      -
     93H  LYS*     3.9    39.9    -      -       +      +
     94H  THR      3.2    18.3    +      -       -      +
     95H  MET*     4.0     9.4    -      -       -      +
     97H  GLN*     1.3    76.5    -      -       -      +
     99H  MET*     1.3    63.2    +      -       +      +
    101H  ASP*     3.5     7.2    +      -       -      +
    102H  LEU*     3.1    20.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 99 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30H  ILE*     3.5    31.0    -      -       +      -
     34H  MET*     4.8     2.2    -      -       +      -
     42H  LEU*     4.0    37.2    -      -       +      -
     46H  MET*     4.0     8.7    -      -       +      -
     95H  MET*     3.0    26.2    +      -       +      +
     96H  ASP      3.2     4.0    +      -       -      +
     98H  LEU*     1.3    73.5    -      -       -      +
    100H  GLU*     1.3    55.8    +      -       -      +
    102H  LEU*     3.0    30.4    +      -       +      +
    103H  VAL*     2.8    40.2    +      -       +      +
    146H  PHE*     4.4    12.6    -      -       +      +
    149H  PHE*     4.6     5.4    -      -       +      -
    150H  LEU*     3.7    23.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 100 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     96H  ASP*     2.9    35.1    +      -       -      +
     97H  GLN*     3.7    18.1    -      -       -      +
     99H  MET*     1.3    76.8    -      -       -      +
    101H  ASP*     1.3    56.1    +      -       -      +
    103H  VAL*     3.3     7.6    +      -       +      +
    104H  GLY*     2.8    28.6    +      -       -      -
    150H  LEU*     4.2    19.1    -      -       +      +
    152H  LYS*     4.7    15.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 101 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26H  LYS*     3.2    40.2    +      -       -      +
     29H  GLN*     5.1     4.5    +      -       -      -
     30H  ILE*     4.6     4.2    -      -       -      +
     85H  GLU      5.1     0.3    -      -       -      +
     93H  LYS*     5.1    12.0    +      -       -      +
     97H  GLN      3.0    16.3    +      -       -      +
     98H  LEU*     3.8     8.8    -      -       -      +
    100H  GLU*     1.3    75.7    -      -       -      +
    102H  LEU*     1.3    60.8    +      -       -      +
    104H  GLY*     3.9     1.7    -      -       -      -
    105H  THR*     2.8    34.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 102 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23H  PHE*     3.6    32.5    -      -       +      -
     26H  LYS*     5.4     0.9    -      -       -      -
     27H  ILE*     5.1     1.3    -      -       +      -
     30H  ILE*     4.0    17.7    -      -       +      -
     46H  MET*     4.1     6.3    -      -       +      -
     49H  LEU*     3.9    21.5    -      -       +      -
     98H  LEU      3.1    13.3    +      -       -      +
     99H  MET*     3.0    37.6    +      -       +      +
    101H  ASP*     1.3    76.8    -      -       -      +
    103H  VAL*     1.3    59.2    +      -       -      +
    105H  THR*     3.2     5.0    +      -       -      -
    106H  LEU*     3.0    36.1    +      -       +      +
    146H  PHE*     4.1    20.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 103 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     99H  MET      2.8    20.9    +      -       -      +
    100H  GLU*     3.7     6.5    -      -       -      +
    102H  LEU*     1.3    71.8    -      -       +      +
    104H  GLY*     1.3    57.7    +      -       -      +
    106H  LEU*     3.2    11.3    +      -       +      +
    107H  GLU*     2.9    51.4    +      -       +      +
    143H  ILE*     4.9     7.0    -      -       +      +
    146H  PHE*     3.8    29.4    -      -       +      -
    147H  LYS*     4.0    25.8    -      -       +      +
    150H  LEU*     4.3    15.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 104 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100H  GLU      2.8    19.2    +      -       -      -
    101H  ASP*     3.9     2.5    -      -       -      -
    103H  VAL*     1.3    74.5    -      -       -      +
    105H  THR*     1.3    55.3    +      -       -      +
    107H  GLU*     3.6    14.4    +      -       -      +
    108H  LEU*     3.2    24.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 105 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23H  PHE*     3.5    33.0    -      -       +      -
     26H  LYS*     3.6    16.9    -      -       -      -
     84H  VAL*     3.5    32.6    -      -       +      +
     85H  GLU      5.1     0.3    +      -       -      -
    101H  ASP*     2.8    24.7    +      -       -      -
    102H  LEU      3.2     4.2    +      -       -      -
    104H  GLY*     1.3    73.3    -      -       -      +
    106H  LEU*     1.3    61.2    +      -       -      +
    108H  LEU*     3.4     7.0    +      -       +      +
    109H  LEU*     3.0    28.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 106 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23H  PHE*     3.7    14.6    -      -       +      -
     49H  LEU*     5.1     1.6    -      -       +      -
     53H  PHE*     3.6    33.2    -      -       +      -
    102H  LEU*     3.0    37.5    +      -       +      +
    103H  VAL*     3.7     9.9    -      -       +      +
    105H  THR*     1.3    76.3    -      -       -      +
    107H  GLU*     1.3    52.9    +      -       -      +
    109H  LEU*     3.3     6.0    +      -       +      +
    110H  ARG*     2.8    29.5    +      -       -      +
    139H  ILE*     3.4    20.3    -      -       +      +
    142H  HIS*     4.1    28.7    -      -       +      -
    143H  ILE*     3.8    15.7    -      -       +      -
    146H  PHE*     4.1    14.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 107 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    103H  VAL*     2.9    26.4    +      -       +      +
    104H  GLY*     3.7    14.8    -      -       -      +
    105H  THR      3.2     0.2    -      -       -      -
    106H  LEU*     1.3    73.8    -      -       -      +
    108H  LEU*     1.3    63.1    +      -       -      +
    110H  ARG*     3.4    29.1    +      -       -      +
    111H  ASP*     3.0    32.6    +      -       -      +
    143H  ILE*     4.1    16.7    -      -       +      +
    147H  LYS*     3.4    28.6    +      -       -      -
    154H  PRO      4.8     1.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 108 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19H  ASN*     4.3     1.1    -      -       -      +
     83H  SER*     3.9    22.0    -      -       -      +
     84H  VAL*     3.9    28.5    -      -       +      +
    104H  GLY      3.2    11.2    +      -       -      +
    105H  THR*     3.5    10.8    -      -       +      +
    107H  GLU*     1.3    78.9    -      -       -      +
    109H  LEU*     1.3    62.7    +      -       +      +
    111H  ASP*     3.2     5.7    +      -       -      +
    112H  GLU*     2.9    57.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 109 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16H  GLN*     3.4    25.6    -      -       -      +
     19H  ASN*     3.9    21.5    -      -       +      +
     20H  LEU*     4.2    15.3    -      -       +      -
     23H  PHE*     3.8    38.1    -      -       +      -
     53H  PHE*     4.5     8.7    -      -       +      -
     84H  VAL*     4.3     3.6    -      -       +      -
    105H  THR*     3.0    18.7    +      -       +      +
    106H  LEU*     3.6    10.5    -      -       -      +
    107H  GLU      3.3     0.2    -      -       -      -
    108H  LEU*     1.3    78.8    -      -       +      +
    110H  ARG*     1.3    68.0    +      -       -      +
    112H  GLU*     3.8     0.8    -      -       -      -
    113H  TYR*     2.9    35.6    +      -       +      -
    139H  ILE*     4.2    12.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 110 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    106H  LEU      2.8    17.7    +      -       -      +
    107H  GLU*     3.4    31.6    +      -       -      +
    109H  LEU*     1.3    73.0    -      -       -      +
    111H  ASP*     1.3    80.1    +      -       -      +
    113H  TYR*     3.3     5.8    +      -       -      +
    114H  LYS*     3.0    26.9    +      -       +      +
    136H  LYS*     4.3    18.3    -      -       +      +
    139H  ILE*     3.9    14.9    -      -       +      +
    140H  ASP*     3.3    27.2    +      -       -      +
    143H  ILE*     3.8    28.3    -      -       +      +
    155H  LEU*     4.0    23.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 111 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    107H  GLU*     3.0    23.5    +      -       -      +
    108H  LEU*     3.2     5.2    +      -       -      +
    109H  LEU      3.2     0.4    -      -       -      -
    110H  ARG*     1.3   103.1    +      -       -      +
    112H  GLU*     1.3    66.0    +      -       +      +
    114H  LYS*     3.4    11.5    +      -       -      +
    115H  GLN*     3.3    25.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 112 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12H  PHE*     3.0    24.0    -      -       +      -
     15H  HIS*     3.2     8.6    +      -       -      -
     16H  GLN*     3.2    18.1    +      -       -      +
     19H  ASN*     3.0    19.8    +      -       -      -
     83H  SER*     2.7    28.5    +      -       -      -
    108H  LEU*     2.9    39.1    +      -       +      +
    109H  LEU*     4.1     3.6    -      -       -      +
    111H  ASP*     1.3    77.6    -      -       +      +
    113H  TYR*     1.3    57.4    +      -       -      +
    115H  GLN*     3.2    19.5    +      -       -      +
    116H  GLY      3.1    10.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 113 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12H  PHE*     4.0     6.3    -      +       -      -
     16H  GLN*     3.5    37.2    -      -       +      +
     20H  LEU*     3.6    23.8    -      -       +      +
     56H  GLN*     2.9    19.0    +      -       -      -
     60H  VAL*     4.7     2.9    -      -       +      +
    109H  LEU*     2.9    36.3    +      -       +      +
    110H  ARG*     3.7     5.4    -      -       -      +
    112H  GLU*     1.3    73.3    -      -       -      +
    114H  LYS*     1.3    60.9    +      -       -      +
    116H  GLY      3.3     0.3    +      -       -      -
    117H  ILE*     2.8    36.1    +      -       +      +
    132H  LEU*     3.9    24.8    -      -       +      +
    135H  PHE*     3.4    41.7    -      +       +      -
    136H  LYS*     4.4    11.9    -      -       +      -
    139H  ILE*     4.1    14.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 114 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    124C  GLY      4.5     9.9    -      -       -      -
    126C  ASP*     4.1    19.7    +      -       -      -
    110H  ARG*     3.0    14.8    +      -       +      +
    111H  ASP*     3.5    15.7    -      -       -      +
    113H  TYR*     1.3    77.6    -      -       -      +
    115H  GLN*     1.3    60.6    +      -       +      +
    117H  ILE*     3.3    14.4    +      -       -      +
    118H  GLU*     3.1    48.2    +      -       -      +
    136H  LYS*     4.5    20.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 115 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12H  PHE*     4.6     3.9    -      -       +      -
    111H  ASP*     3.3    10.4    +      -       -      +
    112H  GLU*     3.2    25.0    +      -       -      +
    113H  TYR      3.2     0.6    -      -       -      -
    114H  LYS*     1.3    75.7    -      -       +      +
    116H  GLY*     1.3    59.2    +      -       -      +
    118H  GLU*     3.3    15.2    +      -       -      +
    119H  LEU*     2.9    32.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 116 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12H  PHE*     3.5    37.5    -      -       -      -
    112H  GLU      3.1    10.5    +      -       -      -
    113H  TYR      3.3     1.3    +      -       -      -
    115H  GLN*     1.3    72.8    -      -       -      +
    117H  ILE*     1.3    61.4    +      -       -      +
    119H  LEU*     3.5     5.6    -      -       -      +
    120H  THR*     2.9    32.4    +      -       -      -
    132H  LEU*     3.6     7.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 117 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    126C  ASP*     3.9    29.6    -      -       +      +
    127C  VAL*     6.3     0.2    -      -       +      -
    113H  TYR      2.8    28.7    +      -       -      +
    114H  LYS*     3.5    15.0    -      -       -      +
    115H  GLN      3.2     0.2    -      -       -      -
    116H  GLY*     1.3    77.2    -      -       -      +
    118H  GLU*     1.3    59.7    +      -       +      +
    120H  THR*     3.2    11.4    -      -       -      +
    121H  ASP*     2.9    26.1    +      -       +      +
    129H  ASN*     3.2    18.8    +      -       -      +
    132H  LEU*     3.7    23.8    -      -       +      +
    133H  ILE*     3.9    30.1    -      -       +      +
    136H  LYS*     4.3    18.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 118 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    114H  LYS*     3.1    43.1    +      -       -      +
    115H  GLN*     3.7    15.9    -      -       -      +
    117H  ILE*     1.3    77.9    -      -       +      +
    119H  LEU*     1.3    62.3    +      -       -      +
    121H  ASP*     3.2     8.0    +      -       -      +
    122H  LYS*     3.1    50.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 119 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7H  VAL*     3.9    27.1    -      -       +      +
      8H  ASP*     3.7     7.4    -      -       -      +
      9H  THR*     3.6    22.9    -      -       -      +
     12H  PHE*     3.6    39.0    -      -       +      -
    115H  GLN*     2.9    16.7    +      -       +      +
    116H  GLY*     3.5     5.4    -      -       -      +
    118H  GLU*     1.3    75.2    -      -       -      +
    120H  THR*     1.3    57.3    +      -       -      +
    122H  LYS*     3.6     6.5    +      -       -      +
    123H  GLU*     3.1    42.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 120 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9H  THR*     3.6    18.4    +      -       -      +
    116H  GLY      2.9    14.9    +      -       -      +
    117H  ILE*     3.2     8.3    -      -       -      +
    119H  LEU*     1.3    74.4    -      -       -      +
    121H  ASP*     1.3    62.1    +      -       -      +
    123H  GLU*     3.7     2.6    +      -       -      -
    124H  GLY      3.3     1.6    +      -       -      -
    125H  ASP*     3.0    33.4    +      -       -      +
    128H  THR*     3.4    27.7    -      -       -      +
    129H  ASN*     3.0    49.1    -      -       +      +
    132H  LEU*     4.5     2.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 121 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    117H  ILE*     2.9    14.7    +      -       +      +
    118H  GLU*     3.2    11.2    +      -       -      +
    120H  THR*     1.3    77.8    -      -       -      +
    122H  LYS*     1.3    64.3    +      -       +      +
    124H  GLY*     3.0    20.1    +      -       -      -
    129H  ASN*     4.0    13.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 122 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    118H  GLU*     3.1    49.5    +      -       -      +
    119H  LEU*     4.1     5.7    -      -       -      +
    121H  ASP*     1.3    82.5    -      -       +      +
    123H  GLU*     1.3    58.9    +      -       -      +
    124H  GLY      3.6     0.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 123 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7H  VAL      4.7     1.4    -      -       -      +
      8H  ASP*     3.9    13.6    -      -       -      +
      9H  THR*     2.9    39.2    +      -       -      +
    119H  LEU*     3.1    30.3    +      -       -      +
    120H  THR      4.1     4.9    -      -       -      +
    121H  ASP      3.2     0.4    -      -       -      -
    122H  LYS*     1.3    76.1    -      -       -      +
    124H  GLY*     1.3    60.6    +      -       -      +
    125H  ASP*     3.6     6.2    +      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il