Contacts of the helix formed by residues 96 - 125 (chain C) in PDB entry 2CHP
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 96 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39C LYS* 5.6 3.6 - - - +
95C THR* 1.3 79.9 - - - +
97C ALA* 1.3 65.2 - - - +
98C SER* 3.7 7.0 + - - -
99C GLU* 3.0 36.1 + - - +
100C MET* 3.0 27.6 + - - +
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Residues in contact with ALA 97 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C VAL* 4.3 15.4 - - + +
39C LYS* 4.3 14.8 + - - +
42C HIS* 5.3 6.1 - - + -
46C LEU* 3.6 27.5 - - + +
96C SER* 1.3 73.0 - - - +
98C SER* 1.3 58.4 + - - +
100C MET* 3.3 5.4 + - - +
101C VAL* 3.0 34.6 + - - +
151C TYR* 3.7 11.4 - - - +
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Residues in contact with SER 98 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96C SER* 3.3 7.0 + - - -
97C ALA* 1.3 76.1 - - - +
99C GLU* 1.3 60.4 + - - +
101C VAL* 4.6 0.4 - - - -
102C GLN* 2.8 31.5 + - - +
151C TYR* 4.5 7.4 + - - -
152C LEU* 3.8 24.6 - - - +
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Residues in contact with GLU 99 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93C ASN 4.5 1.8 - - - +
94C GLU* 3.7 20.1 - - + +
95C THR* 2.9 27.5 + - - -
96C SER* 3.0 30.8 + - - +
98C SER* 1.3 78.5 - - - +
100C MET* 1.3 56.3 + - - +
102C GLN* 3.8 5.7 - - - +
103C ALA* 3.0 30.0 + - - +
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Residues in contact with MET 100 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33C ARG* 5.9 1.1 - - + -
34C PHE* 3.3 64.9 - - + +
37C TYR* 3.9 35.0 - - + +
38C VAL* 4.0 22.7 - - - -
50C PHE* 4.3 7.4 - - + -
94C GLU* 4.1 19.5 - - + +
95C THR* 3.9 17.5 - - - +
96C SER 3.0 17.2 + - - +
97C ALA* 3.5 7.0 - - - +
98C SER 3.3 0.2 - - - -
99C GLU* 1.3 76.2 - - - +
101C VAL* 1.3 63.2 + - - +
103C ALA 3.3 0.3 + - - -
104C LEU* 3.1 20.1 + - - +
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Residues in contact with VAL 101 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C LEU* 4.2 19.7 - - + -
50C PHE* 4.4 9.2 - - + -
97C ALA 3.0 22.7 + - - +
98C SER 4.0 2.9 - - - +
100C MET* 1.3 73.1 - - - +
102C GLN* 1.3 63.1 + - - +
104C LEU* 3.2 11.5 + - - +
105C VAL* 3.1 20.8 + - - +
148C LEU* 3.4 47.3 - - + +
151C TYR* 4.0 20.6 - - + -
152C LEU* 3.8 15.9 - - + -
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Residues in contact with GLN 102 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98C SER 2.8 22.3 + - - +
99C GLU* 3.8 5.8 - - - +
101C VAL* 1.3 74.7 - - - +
103C ALA* 1.3 62.4 + - - +
105C VAL* 3.2 15.9 + - - +
106C ASN* 3.0 52.9 + - - +
152C LEU* 3.3 24.9 - - + +
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Residues in contact with ALA 103 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C LYS* 4.9 8.1 - - + +
34C PHE* 4.0 9.2 - - + -
94C GLU* 3.5 29.4 - - + +
99C GLU 3.0 17.1 + - - +
100C MET 3.3 5.4 + - - +
102C GLN* 1.3 76.7 - - - +
104C LEU* 1.3 61.1 + - - +
106C ASN* 3.3 12.0 + - - +
107C ASP* 3.1 28.4 + - - -
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Residues in contact with LEU 104 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27C LEU* 4.1 19.7 - - + -
30C LYS* 4.7 3.6 - - + -
31C LEU* 3.7 26.7 - - + -
34C PHE* 3.7 20.6 - - + -
50C PHE* 3.6 36.1 - - + -
53C LEU* 4.0 7.6 - - + -
100C MET 3.1 16.8 + - - +
101C VAL* 3.2 6.3 + - - +
103C ALA* 1.3 74.6 - - - +
105C VAL* 1.3 63.7 + - - +
107C ASP* 3.1 5.2 + - - +
108C TYR* 2.8 35.7 + - + -
148C LEU* 3.7 25.8 - - + -
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Residues in contact with VAL 105 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101C VAL 3.1 16.2 + - - +
102C GLN* 3.2 21.3 + - - +
104C LEU* 1.3 75.7 - - - +
106C ASN* 1.3 62.6 + - - +
108C TYR* 3.5 4.6 + - - +
109C LYS* 3.0 53.5 + - + +
145C VAL* 4.2 7.6 - - + +
148C LEU* 3.7 26.7 - - + +
149C SER* 4.0 21.5 - - - +
152C LEU* 4.4 10.5 - - + -
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Residues in contact with ASN 106 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102C GLN* 3.0 43.5 + - - +
103C ALA* 3.6 12.2 - - - +
104C LEU 3.2 0.4 - - - -
105C VAL* 1.3 76.3 - - - +
107C ASP* 1.3 66.3 + - - +
109C LYS* 3.7 7.2 - - - +
110C GLN* 3.1 24.2 + - - +
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Residues in contact with ASP 107 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27C LEU* 3.7 22.5 - - + +
30C LYS* 2.7 43.1 + - - +
88C ILE* 4.0 29.2 - - + +
103C ALA 3.1 14.5 + - - +
104C LEU 3.8 4.9 - - - +
106C ASN* 1.3 80.5 - - - +
108C TYR* 1.3 57.8 + - - +
110C GLN* 3.3 8.6 + - - +
111C ILE* 2.9 37.6 + - + +
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Residues in contact with TYR 108 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24C TRP* 4.0 16.4 - + - -
27C LEU* 3.4 32.2 - - + +
31C LEU* 4.2 4.7 - - + +
53C LEU* 3.6 37.6 + - + +
56C HIS* 5.2 4.9 + + - -
104C LEU* 2.8 35.7 + - + +
107C ASP* 1.3 74.5 - - - +
109C LYS* 1.3 55.1 + - - +
111C ILE* 3.4 5.2 + - + +
112C SER* 3.1 29.5 + - - -
141C VAL* 3.6 29.5 - - + +
144C GLN* 4.3 14.6 - - + -
145C VAL* 3.5 22.0 - - + -
148C LEU* 3.9 27.8 - - + -
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Residues in contact with LYS 109 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105C VAL* 3.0 38.0 + - + +
106C ASN* 3.7 7.9 - - - +
107C ASP 3.3 0.2 - - - -
108C TYR* 1.3 74.7 - - - +
110C GLN* 1.3 59.3 + - - +
112C SER* 3.5 6.5 + - - -
113C SER* 3.1 25.6 + - - -
145C VAL* 3.7 31.6 - - + +
149C SER* 5.0 3.3 + - - -
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Residues in contact with GLN 110 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C ASN* 6.1 0.2 - - - +
87C SER* 3.1 31.9 + - - +
88C ILE* 3.6 17.8 - - + +
106C ASN 3.1 17.2 + - - +
107C ASP* 3.3 8.6 + - - +
109C LYS* 1.3 72.8 - - - +
111C ILE* 1.3 68.3 + - - +
113C SER* 3.3 6.5 + - - -
114C GLU* 2.9 54.7 + - + +
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Residues in contact with ILE 111 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20C GLN* 4.2 15.1 - - - +
23C ASN* 4.4 24.2 - - + +
24C TRP* 3.8 38.6 - - + +
27C LEU* 4.2 23.3 - - + -
88C ILE* 4.6 13.9 - - + -
107C ASP 2.9 25.1 + - - +
108C TYR* 3.7 7.6 - - + +
110C GLN* 1.3 77.9 - - + +
112C SER* 1.3 54.1 + - - +
114C GLU* 3.4 3.9 + - - +
115C SER* 2.6 46.4 + - - +
137C LEU* 6.0 0.9 - - + -
141C VAL* 4.4 9.9 - - + -
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Residues in contact with SER 112 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108C TYR 3.1 16.6 + - - -
109C LYS* 3.9 7.2 - - - -
110C GLN 3.2 0.2 - - - -
111C ILE* 1.3 76.7 - - - +
113C SER* 1.3 61.3 + - - +
115C SER* 3.2 8.3 + - - -
116C LYS* 3.0 34.2 + - - +
138C ILE* 3.7 7.1 - - - +
141C VAL* 3.6 18.4 - - - -
142C GLU* 2.8 33.4 + - - +
145C VAL* 6.0 0.4 - - - -
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Residues in contact with SER 113 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109C LYS 3.1 17.0 + - - -
110C GLN* 3.3 7.5 + - - -
112C SER* 1.3 75.7 - - - +
114C GLU* 1.3 66.1 + - - +
116C LYS* 3.4 14.3 + - - +
117C PHE* 3.4 17.8 + - - +
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Residues in contact with GLU 114 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19C THR* 4.4 2.1 - - - +
20C GLN* 3.0 28.6 + - - +
23C ASN* 3.4 3.3 + - - -
87C SER* 2.7 27.0 + - - -
110C GLN* 2.9 48.3 + - + +
111C ILE 3.9 2.5 - - - +
113C SER* 1.3 81.1 - - - +
115C SER* 1.3 56.0 + - - +
117C PHE* 3.1 10.1 + - - +
118C VAL* 3.0 30.4 + - - +
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Residues in contact with SER 115 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20C GLN* 4.4 4.5 + - - -
24C TRP* 5.5 0.3 + - - -
111C ILE* 2.6 38.2 + - - +
112C SER* 3.6 5.1 - - - -
114C GLU* 1.3 68.9 - - - +
116C LYS* 1.3 67.1 + - - +
118C VAL* 3.1 11.3 + - - +
119C ILE* 3.0 25.1 + - - +
134C PHE* 3.8 26.1 - - - +
137C LEU* 5.1 5.4 - - - +
138C ILE* 3.8 22.6 - - - +
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Residues in contact with LYS 116 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112C SER* 3.0 31.9 + - - +
113C SER* 3.8 10.8 - - - +
114C GLU 3.3 0.4 - - - -
115C SER* 1.3 75.8 - - - +
117C PHE* 1.3 60.4 + - - +
119C ILE* 3.2 21.9 + - + +
120C GLY* 3.2 10.2 + - - -
138C ILE* 3.7 20.4 - - + -
142C GLU* 2.9 25.7 + - - -
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Residues in contact with PHE 117 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16C SER* 5.8 1.6 - - - -
113C SER 3.4 9.7 + - - +
114C GLU* 3.1 13.2 + - - +
116C LYS* 1.3 77.9 - - - +
118C VAL* 1.3 66.0 + - + +
120C GLY* 3.2 3.4 + - - +
121C LEU* 3.2 54.3 + - + +
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Residues in contact with VAL 118 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13C VAL* 5.6 0.9 - - + -
16C SER* 3.8 33.2 - - - +
17C LEU* 3.9 13.2 - - + -
20C GLN* 4.2 23.1 - - + +
114C GLU 3.0 18.7 + - - +
115C SER* 3.1 10.5 + - - +
117C PHE* 1.3 78.6 - - + +
119C ILE* 1.3 62.6 + - - +
121C LEU* 3.2 8.2 + - + +
122C ALA* 2.9 23.6 + - + +
130C THR* 4.8 5.6 - - + -
134C PHE* 3.8 28.9 - - + -
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Residues in contact with ILE 119 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115C SER 3.0 14.1 + - - +
116C LYS* 3.5 11.7 - - + +
117C PHE 3.2 0.4 - - - -
118C VAL* 1.3 76.1 - - - +
120C GLY* 1.3 65.1 + - - +
122C ALA* 3.8 1.1 - - - +
123C GLU* 2.9 46.4 + - - +
131C ALA* 3.9 30.5 - - + +
134C PHE* 3.9 7.4 - - + -
135C VAL* 3.6 24.2 - - + +
138C ILE* 3.3 31.4 - - + -
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Residues in contact with GLY 120 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116C LYS 3.2 9.9 + - - -
117C PHE* 3.2 3.3 + - - -
118C VAL 3.2 0.6 - - - -
119C ILE* 1.3 81.7 - - - +
121C LEU* 1.3 61.7 + - - +
123C GLU* 3.4 10.7 + - - +
124C GLU* 3.0 26.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 121 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C ASN* 5.2 1.3 - - - +
12C LEU* 3.9 49.6 - - + +
13C VAL* 3.8 12.9 - - + +
16C SER* 3.9 18.2 - - - +
117C PHE* 3.2 49.5 + - + +
118C VAL* 3.6 7.4 - - + +
120C GLY* 1.3 77.0 - - - +
122C ALA* 1.3 62.5 + - - +
124C GLU* 3.4 9.0 + - + +
125C ASN* 3.1 22.5 + - - +
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Residues in contact with ALA 122 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13C VAL* 4.0 12.7 - - + +
118C VAL* 2.9 17.4 + - + +
119C ILE 3.8 2.9 - - - +
121C LEU* 1.3 74.2 - - - +
123C GLU* 1.3 64.0 + - - +
125C ASN 3.0 9.2 + - - -
127C ASP* 2.9 44.4 + - + +
130C THR* 4.0 16.4 - - + -
131C ALA* 3.7 19.3 - - + +
----------------------------------------------------------
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Residues in contact with GLU 123 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119C ILE* 2.9 39.8 + - - +
120C GLY* 3.8 8.7 - - - +
122C ALA* 1.3 73.0 - - - +
124C GLU* 1.3 56.0 + - - +
126C GLN* 3.0 22.8 + - - +
127C ASP 4.4 4.7 + - - +
128C ASN* 5.4 9.0 - - - +
131C ALA* 4.2 13.5 - - + +
----------------------------------------------------------
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Residues in contact with GLU 124 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C ASN* 4.2 28.9 + - - +
120C GLY 3.0 18.2 + - - +
121C LEU* 3.7 9.2 - - + +
122C ALA 3.3 0.2 - - - -
123C GLU* 1.3 74.3 - - - +
125C ASN* 1.3 57.8 + - - +
126C GLN* 3.4 8.3 + - - +
----------------------------------------------------------
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Residues in contact with ASN 125 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C ASN* 3.1 34.3 - - + +
10C GLN* 3.1 36.0 - - - +
13C VAL* 4.2 11.3 - - + +
121C LEU 3.1 11.5 + - - +
122C ALA* 3.0 8.7 + - - +
124C GLU* 1.3 75.8 - - - +
126C GLN* 1.3 69.4 + - - +
127C ASP* 3.2 10.5 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il