Contacts of the helix formed by residues 318 - 344 (chain C) in PDB entry 2CX9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 318 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243C ARG* 5.0 3.6 - - + -
246C ASP* 3.8 29.4 - - + -
247C GLY 4.5 2.2 - - - -
250C ILE* 3.9 22.7 - - + -
308C ALA* 4.1 3.6 - - - +
311C LEU* 3.8 20.2 - - + -
312C LYS* 3.5 50.5 - - + -
316C ARG 3.3 15.9 - - - -
317C PRO* 1.3 75.2 - - + +
319C THR* 1.3 62.4 + - - +
320C LEU 3.3 2.7 - - - -
321C GLU* 3.3 13.5 - - + +
322C ALA* 2.8 36.7 + - + +
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Residues in contact with THR 319 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246C ASP* 2.6 39.9 + - - +
249C ARG* 5.3 0.9 - - - +
317C PRO* 5.2 1.3 - - - +
318C PHE* 1.3 79.8 + - - +
320C LEU* 1.3 63.0 + - - +
322C ALA* 4.1 1.0 - - - +
323C ALA* 3.2 23.7 + - - +
378C VAL* 4.1 15.2 - - + +
382C ARG* 4.1 29.2 - - - +
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Residues in contact with LEU 320 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299A GLU* 5.6 4.7 - - - +
318C PHE 3.3 0.2 - - - -
319C THR* 1.3 81.0 - - - +
321C GLU* 1.3 78.0 + - - +
323C ALA* 3.3 4.5 + - - +
324C GLN* 2.9 52.0 + - - +
378C VAL* 5.6 0.4 - - - -
379C ILE* 3.6 44.4 - - + +
382C ARG* 4.3 22.6 - - + +
383C LEU* 4.4 14.8 - - + -
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Residues in contact with GLU 321 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304C LEU* 4.4 3.7 - - - +
307C LYS* 3.8 25.2 + - + +
308C ALA* 3.7 14.7 - - - +
311C LEU* 3.4 32.5 - - + +
317C PRO 3.9 3.9 - - - +
318C PHE* 3.3 20.7 + - - +
319C THR 4.1 0.2 + - - -
320C LEU* 1.3 96.5 + - - +
322C ALA* 1.3 59.4 + - - +
324C GLN* 3.6 14.1 + - - +
325C ALA* 3.0 27.5 + - - +
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Residues in contact with ALA 322 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246C ASP* 3.4 31.4 - - - +
249C ARG* 3.8 9.5 - - + +
250C ILE* 3.8 13.2 - - + -
308C ALA* 4.0 9.1 - - - +
318C PHE* 2.8 27.1 + - + +
319C THR 4.1 2.7 - - - +
321C GLU* 1.3 71.4 - - - +
323C ALA* 1.3 59.8 + - - +
325C ALA* 3.8 2.1 - - - +
326C LYS* 3.0 30.8 + - - +
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Residues in contact with ALA 323 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249C ARG* 4.5 7.6 - - - +
319C THR 3.2 17.6 + - - +
320C LEU* 3.7 4.3 - - - +
322C ALA* 1.3 78.6 - - - +
324C GLN* 1.3 57.5 + - - +
326C LYS* 4.7 0.7 - - - +
327C LEU* 3.1 31.9 + - - +
375C LEU* 3.9 24.3 - - + +
378C VAL* 4.2 15.7 - - + -
379C ILE* 3.8 19.4 - - + +
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Residues in contact with GLN 324 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295A ALA* 3.8 9.4 - - - +
296A THR* 3.4 42.1 + - + +
299A GLU* 3.5 35.0 - - - +
304C LEU* 4.1 10.4 - - + +
307C LYS* 5.1 1.0 - - - +
320C LEU* 2.9 48.4 + - + +
321C GLU* 3.8 17.2 - - - +
323C ALA* 1.3 78.1 - - - +
325C ALA* 1.3 61.2 + - - +
328C PHE* 3.1 27.0 + - - +
379C ILE* 3.9 13.4 - - + +
383C LEU* 5.0 0.5 - - - +
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Residues in contact with ALA 325 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250C ILE* 5.6 1.6 - - - -
253C ALA* 3.7 4.3 - - + -
301C ALA 5.0 1.4 - - - +
304C LEU* 3.7 38.5 - - + +
305C TYR* 3.7 16.2 - - + +
308C ALA* 4.5 1.6 - - + -
321C GLU 3.0 18.6 + - - +
322C ALA* 3.8 7.0 - - - +
323C ALA 3.3 0.2 - - - -
324C GLN* 1.3 77.2 - - - +
326C LYS* 1.3 56.6 + - - +
328C PHE* 4.1 0.5 - - - +
329C ALA* 2.9 34.3 + - - +
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Residues in contact with LYS 326 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249C ARG* 3.7 30.7 - - + +
252C ILE* 4.0 18.6 - - + -
253C ALA* 3.7 10.9 - - - +
322C ALA 3.0 17.5 + - - +
323C ALA 4.0 0.4 - - - +
325C ALA* 1.3 73.5 - - - +
327C LEU* 1.3 54.5 + - - +
330C SER* 2.6 43.0 + - - +
365C THR 2.9 25.4 + - - +
366C ARG* 3.9 11.1 + - - +
368C GLY 2.9 21.8 + - - -
369C GLU* 4.0 7.2 - - - -
370C GLY 2.5 29.5 + - - -
371C THR 4.4 0.4 - - - -
372C SER 4.5 0.4 - - - +
375C LEU* 3.3 18.0 - - + +
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Residues in contact with LEU 327 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292A ALA 5.2 2.5 - - - +
293A GLU* 5.3 5.2 - - + -
296A THR* 4.1 17.5 - - + +
323C ALA 3.1 19.1 + - - +
324C GLN 3.9 1.1 - - - +
326C LYS* 1.3 76.8 - - - +
328C PHE* 1.3 60.3 + - - +
330C SER* 2.8 18.1 + - - -
331C GLU* 3.0 29.9 + - + +
372C SER* 3.5 40.8 - - - +
375C LEU* 3.7 11.6 - - + +
376C LYS* 3.9 27.8 - - + -
379C ILE* 3.8 21.5 - - + -
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Residues in contact with PHE 328 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296A THR* 4.0 15.7 - - + -
297A GLU* 4.1 16.6 - - + -
300A ALA* 4.9 0.7 - - + -
328A PHE* 3.6 38.4 - + - -
297C GLU* 3.3 39.3 - - + -
300C ALA* 3.8 9.6 - - + -
301C ALA* 3.7 19.3 - - + -
304C LEU* 3.7 16.8 - - + -
324C GLN 3.1 16.9 + - - +
325C ALA 4.1 0.4 - - - +
327C LEU* 1.3 79.6 - - - +
329C ALA* 1.3 60.4 + - - +
331C GLU* 4.1 3.0 - - + +
332C ALA* 2.9 37.6 + - + +
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Residues in contact with ALA 329 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253C ALA* 3.4 32.1 - - + +
256C ALA* 3.7 3.1 - - + -
257C VAL* 3.8 6.3 - - + -
298C LEU* 5.2 0.4 - - - +
301C ALA* 3.7 26.8 - - + +
325C ALA 2.9 19.5 + - - +
328C PHE* 1.3 76.7 - - - +
330C SER* 1.3 55.9 + - - +
332C ALA* 3.9 0.2 - - - +
333C ALA* 2.7 38.6 + - - +
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Residues in contact with SER 330 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
252C ILE* 5.7 0.2 - - - -
256C ALA* 3.8 5.1 - - - +
326C LYS* 2.6 28.4 + - - +
327C LEU* 2.8 17.0 + - - -
329C ALA* 1.3 76.9 - - - +
331C GLU* 1.3 61.7 + - - -
333C ALA* 3.9 0.5 - - - +
334C VAL* 3.1 30.0 + - - +
365C THR* 3.3 44.3 + - - -
366C ARG* 3.7 9.4 - - - +
372C SER* 4.1 6.2 + - - -
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Residues in contact with GLU 331 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327C LEU* 3.0 26.3 + - + +
328C PHE* 4.1 3.8 - - + +
330C SER* 1.3 81.9 + - - +
332C ALA* 1.3 61.6 + - - +
334C VAL* 3.7 1.7 + - - +
335C LYS* 3.3 22.7 + - - +
366C ARG* 2.9 38.8 + - - +
372C SER* 2.7 32.2 + - - +
373C GLU* 5.1 1.0 - - - +
376C LYS* 5.9 4.0 - - - +
342D GLN* 4.7 0.3 + - - -
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Residues in contact with ALA 332 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294C ALA* 6.0 0.2 - - - -
297C GLU* 3.8 41.6 - - + +
298C LEU* 4.7 7.4 - - + +
328C PHE* 2.9 32.2 + - + +
329C ALA* 3.9 3.6 - - - +
331C GLU* 1.3 76.0 - - - +
333C ALA* 1.3 65.6 + - - +
335C LYS* 3.4 4.4 + - - +
336C ALA* 3.0 23.4 + - - +
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Residues in contact with ALA 333 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
256C ALA* 3.1 36.8 - - + +
257C VAL 4.5 0.2 - - - +
260C GLY* 4.1 12.8 - - - +
298C LEU* 4.2 7.1 - - + +
329C ALA 2.7 24.0 + - - +
330C SER 3.9 1.8 - - - +
332C ALA* 1.3 74.0 - - - +
334C VAL* 1.3 57.6 - - + +
336C ALA* 3.1 2.8 + - - +
337C CYS* 2.9 35.1 + - - -
362C ALA* 4.8 7.0 - - + -
365C THR* 5.2 0.2 - - - +
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Residues in contact with VAL 334 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330C SER 3.1 18.2 + - - +
331C GLU 4.1 2.0 - - - +
333C ALA* 1.3 75.0 - - - +
335C LYS* 1.3 58.7 + - - +
337C CYS* 3.4 5.4 + - - -
338C ASP* 3.0 23.3 + - + +
359C TRP* 3.4 28.5 - - + +
362C ALA* 3.5 35.2 - - + +
363C ARG* 3.8 10.3 - - - -
365C THR* 4.2 0.7 - - - +
366C ARG* 3.5 39.3 - - + +
338D ASP* 5.0 0.9 - - - +
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Residues in contact with LYS 335 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293C GLU* 3.6 27.1 + - - +
294C ALA* 6.1 2.0 - - - +
297C GLU* 3.3 34.1 + - - +
331C GLU 3.3 16.5 + - - +
332C ALA* 3.7 4.7 - - - +
333C ALA 3.2 0.4 - - - -
334C VAL* 1.3 77.1 - - - +
336C ALA* 1.3 66.1 + - - +
338C ASP* 3.1 7.1 + - - +
339C GLU* 2.9 42.3 + - + +
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Residues in contact with ALA 336 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
260C GLY 4.3 7.9 - - - +
263C ALA* 4.4 3.8 - - - +
264C LEU* 5.3 3.1 + - + -
294C ALA* 3.9 29.6 - - + +
298C LEU* 4.3 18.8 - - + -
332C ALA 3.0 18.1 + - - +
333C ALA* 3.1 5.6 + - - +
335C LYS* 1.3 77.7 - - - +
337C CYS* 1.3 63.8 + - - +
339C GLU* 3.3 6.3 + - - +
340C ALA* 3.0 22.3 + - - +
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Residues in contact with CYS 337 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259C LEU 3.9 12.6 - - - -
260C GLY* 4.1 3.1 - - - -
263C ALA* 3.7 25.6 - - + -
333C ALA 2.9 23.8 + - - +
334C VAL* 3.6 6.3 - - - +
336C ALA* 1.3 78.7 - - - +
338C ASP* 1.3 61.4 + - - +
340C ALA* 3.2 4.5 + - - +
341C ILE* 3.1 24.9 + - - +
355C VAL 4.5 1.6 - - - +
358C TYR* 3.9 22.0 - - + -
359C TRP* 3.7 22.7 - - + +
362C ALA* 4.0 11.4 - - - -
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Residues in contact with ASP 338 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
334C VAL 3.0 17.4 + - - +
335C LYS* 3.1 8.7 + - + +
337C CYS* 1.3 77.2 - - - +
339C GLU* 1.3 59.0 + - + +
341C ILE* 3.2 5.7 + - - +
342C GLN* 3.1 11.1 + - - +
359C TRP* 3.8 12.3 - - + +
334D VAL* 5.2 1.3 - - - +
359D TRP* 3.7 14.5 - - - -
363D ARG* 2.7 48.9 + - - -
366D ARG* 2.8 29.1 + - - -
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Residues in contact with GLU 339 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290C LYS* 2.9 58.2 + - + +
293C GLU* 5.6 1.6 - - - +
335C LYS* 2.9 40.0 + - + +
336C ALA* 3.3 7.8 + - - +
338C ASP* 1.3 75.8 - - + +
340C ALA* 1.3 60.7 + - - +
342C GLN* 3.5 8.3 - - - +
343C ILE* 2.8 37.3 + - + +
366D ARG* 4.7 8.6 + - - -
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Residues in contact with ALA 340 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263C ALA* 3.7 33.0 - - + +
267C ALA* 4.1 15.3 - - + -
336C ALA 3.0 12.8 + - - +
337C CYS 3.4 9.6 - - - +
338C ASP 3.2 0.4 - - - -
339C GLU* 1.3 75.6 - - - +
341C ILE* 1.3 65.1 + - - +
343C ILE* 3.3 0.5 + - - +
344C LEU* 3.0 30.3 + - - +
355C VAL* 4.1 16.2 - - + -
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Residues in contact with ILE 341 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337C CYS 3.1 10.6 + - - +
338C ASP* 3.4 15.5 - - - +
340C ALA* 1.3 79.4 - - - +
342C GLN* 1.3 60.9 + - - +
344C LEU 3.4 0.5 + - - -
345C GLY* 3.2 22.2 + - - +
348C GLY* 3.7 21.7 - - - +
349C TYR* 4.6 1.8 - - + +
355C VAL* 3.7 28.7 - - + +
356C GLU* 4.2 7.2 - - - -
359C TRP* 3.6 35.0 - - + -
208D LEU* 4.7 6.1 - - + -
359D TRP* 4.4 10.5 - - + -
363D ARG* 3.7 24.0 - - + +
367D ILE* 4.4 7.2 - - + +
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Residues in contact with GLN 342 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290C LYS* 4.2 9.2 - - - +
338C ASP 3.1 9.1 + - - +
339C GLU* 3.5 16.8 - - - +
340C ALA 3.2 0.2 - - - -
341C ILE* 1.3 75.6 - - - +
343C ILE* 1.3 64.7 + - - +
345C GLY* 3.0 14.8 + - - -
363D ARG* 3.0 36.2 + - - +
366D ARG* 3.1 37.6 + - - +
367D ILE* 3.8 7.5 - - - +
371D THR* 4.1 8.1 - - - +
372D SER* 4.0 6.2 + - - +
373D GLU* 2.8 41.0 + - - +
----------------------------------------------------------
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Residues in contact with ILE 343 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267C ALA* 4.0 28.9 - - + +
270C TYR* 3.9 12.5 - - + -
271C ALA* 4.4 5.8 - - + -
281C ILE* 4.4 16.8 - - + +
287C VAL* 4.3 26.2 - - + -
290C LYS* 3.8 33.2 - - + +
291C LEU* 3.9 26.2 - - + -
339C GLU* 2.8 24.2 + - + +
340C ALA 3.3 4.5 + - - +
342C GLN* 1.3 77.0 - - - +
344C LEU* 1.3 66.5 + - + +
345C GLY* 3.2 1.2 + - - -
----------------------------------------------------------
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Residues in contact with LEU 344 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266C TYR* 4.1 27.6 - - + -
267C ALA* 4.3 11.7 - - - -
270C TYR* 3.5 58.7 + - + -
340C ALA 3.0 20.6 + - - +
342C GLN 3.3 0.2 - - - -
343C ILE* 1.3 76.4 - - + +
345C GLY* 1.3 63.7 + - - +
346C GLY 3.3 0.5 + - - -
347C TYR* 3.2 34.2 + - + +
348C GLY* 3.5 20.4 - - - +
353C TYR* 4.9 7.2 - - + -
355C VAL* 4.3 11.4 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il