Contacts of the helix formed by residues 271 - 301 (chain A) in PDB entry 2DVL


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with HIS 271 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    263A  GLN*     2.9    28.1    +      -       +      -
    264A  PHE*     4.1    18.1    -      +       +      +
    266A  LYS*     4.0    28.0    +      -       +      +
    267A  LYS      4.1     1.8    -      -       -      -
    268A  LEU*     2.7    37.0    +      -       +      +
    269A  LYS      3.8     2.0    -      -       -      +
    270A  GLU*     1.3    78.5    +      -       -      +
    272A  GLN*     1.3    67.3    +      -       -      +
    273A  ALA*     4.8     3.1    -      -       +      +
    274A  ILE*     2.9    24.8    +      -       +      +
    275A  ALA      3.0    10.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLN 272 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    270A  GLU      3.6     4.4    +      -       -      -
    271A  HIS*     1.3    69.8    -      -       -      +
    273A  ALA*     1.3    54.3    +      -       -      +
    275A  ALA*     3.0     7.6    +      -       -      +
    276A  PHE*     2.7    67.8    +      -       +      -
    364B  LEU*     4.0    17.1    -      -       +      +
   1002B  FAD      2.9    43.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 273 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    271A  HIS*     3.3     3.5    -      -       +      -
    272A  GLN*     1.3    78.3    -      -       -      +
    274A  ILE*     1.3    66.4    +      -       +      +
    276A  PHE*     3.5     6.7    +      -       -      +
    277A  LYS*     3.1    31.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 274 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    258A  ALA*     4.1    15.9    -      -       +      -
    268A  LEU*     3.3    50.3    -      -       +      +
    269A  LYS*     4.1     1.6    -      -       -      +
    271A  HIS*     2.9    11.9    +      -       +      +
    273A  ALA*     1.3    76.8    -      -       +      +
    275A  ALA*     1.3    67.7    +      -       -      +
    277A  LYS*     3.0    36.3    +      -       +      +
    278A  ILE*     3.1    14.8    +      -       +      +
    329A  GLN*     5.4     2.2    -      -       +      +
    330A  VAL*     4.6    25.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 275 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    269A  LYS*     3.4    26.2    +      -       +      +
    271A  HIS      3.0     6.9    +      -       -      +
    272A  GLN*     3.5    11.9    -      -       -      +
    274A  ILE*     1.3    77.5    -      -       -      +
    276A  PHE*     1.3    69.5    +      -       +      +
    278A  ILE*     3.4    10.2    +      -       -      +
    279A  ALA*     3.1    22.2    +      -       -      +
    364B  LEU*     6.0     2.7    -      -       +      -
    367B  ALA*     3.8    22.5    -      -       +      +
    371B  TYR*     5.8     2.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 276 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    272A  GLN*     2.7    56.6    +      -       +      +
    273A  ALA*     3.8     6.7    -      -       -      +
    275A  ALA*     1.3    78.0    -      -       +      +
    277A  LYS*     1.3    64.9    +      -       -      +
    279A  ALA*     3.4     5.7    +      -       -      +
    280A  ASP*     2.9    32.2    +      -       -      +
    360B  GLU*     3.4    40.8    -      -       +      -
    363B  ARG*     3.4    40.6    -      -       +      +
    364B  LEU*     3.7    23.1    -      -       +      -
   1002B  FAD      4.8     0.7    -      +       -      -
----------------------------------------------------------
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Residues in contact with LYS 277 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    273A  ALA*     3.1    22.6    +      -       -      +
    274A  ILE*     3.0    22.1    +      -       +      +
    276A  PHE*     1.3    75.8    -      -       -      +
    278A  ILE*     1.3    59.0    +      -       -      +
    280A  ASP*     3.2     8.4    +      -       -      +
    281A  MET*     2.9    43.8    +      -       +      +
    326A  GLU*     2.9    50.7    +      -       +      +
    329A  GLN*     4.1    17.3    -      -       +      +
    330A  VAL*     4.1    19.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 278 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    251A  PHE*     3.5    16.9    -      -       +      -
    254A  ALA*     4.1     7.0    -      -       +      +
    255A  LYS*     3.9    28.0    -      -       +      +
    258A  ALA*     4.5     7.6    -      -       +      -
    269A  LYS*     6.1     0.2    -      -       +      -
    274A  ILE*     3.1    15.0    +      -       +      +
    275A  ALA*     3.6     9.9    -      -       -      +
    277A  LYS*     1.3    76.5    -      -       -      +
    279A  ALA*     1.3    62.3    +      -       -      +
    281A  MET*     3.2    29.1    +      -       +      +
    282A  HIS*     3.0    18.5    +      -       -      +
    330A  VAL*     4.4     7.6    -      -       +      -
    367B  ALA*     5.8     0.7    -      -       +      -
    370B  LEU*     3.7    19.5    -      -       +      -
    371B  TYR*     4.0    27.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 279 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    275A  ALA      3.1    13.8    +      -       -      +
    276A  PHE*     3.7     9.9    -      -       -      +
    277A  LYS      3.3     0.2    -      -       -      -
    278A  ILE*     1.3    76.7    -      -       -      +
    280A  ASP*     1.3    56.8    +      -       -      +
    282A  HIS*     3.0     5.5    +      -       -      +
    283A  VAL*     2.9    31.7    +      -       -      +
    314B  LEU*     5.7     0.2    -      -       +      -
    363B  ARG*     4.0    20.4    -      -       +      +
    366B  ILE*     3.5    36.1    -      -       +      +
    367B  ALA*     4.2     2.9    -      -       +      +
    370B  LEU*     4.1     4.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 280 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    276A  PHE*     2.9    20.7    +      -       -      +
    277A  LYS*     3.6     7.7    -      -       -      +
    279A  ALA*     1.3    73.9    -      -       -      +
    281A  MET*     1.3    67.2    +      -       +      +
    283A  VAL*     3.5     6.1    +      -       -      +
    284A  LYS*     3.3    39.1    +      -       -      +
    314B  LEU*     4.3     6.9    -      -       -      +
    363B  ARG*     2.8    39.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with MET 281 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    251A  PHE*     3.6    25.4    -      -       +      -
    254A  ALA*     4.3     4.3    -      -       +      -
    277A  LYS*     2.9    26.3    +      -       +      +
    278A  ILE*     3.5    38.8    -      -       +      +
    279A  ALA      3.2     0.2    -      -       -      -
    280A  ASP*     1.3    77.5    -      -       +      +
    282A  HIS*     1.3    64.4    +      -       -      +
    284A  LYS*     3.4     9.4    -      -       +      +
    285A  ILE*     3.1    30.6    +      -       -      +
    323A  VAL*     3.9    39.7    -      -       +      +
    326A  GLU*     4.3    12.8    -      -       +      +
    327A  ALA*     4.2     8.1    -      -       -      -
    330A  VAL*     3.8    19.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 282 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    251A  PHE*     4.1    14.1    -      -       +      -
    278A  ILE      3.0    12.3    +      -       -      +
    279A  ALA      3.0     7.4    +      -       -      +
    281A  MET*     1.3    76.5    -      -       -      +
    283A  VAL*     1.3    67.2    +      -       +      +
    285A  ILE*     3.3     7.3    +      -       -      +
    286A  ALA*     2.9    41.4    +      -       +      +
    289A  ARG*     6.3     0.9    -      -       -      -
    307B  LEU*     3.5    43.1    -      -       +      +
    308B  GLU*     6.0     0.8    -      -       -      +
    311B  ALA*     4.6     7.4    -      -       +      +
    366B  ILE*     4.2     8.3    -      -       +      -
    370B  LEU*     3.8    25.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 283 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    279A  ALA      2.9    18.8    +      -       -      +
    280A  ASP*     3.9     7.0    -      -       -      +
    281A  MET      3.3     0.2    -      -       -      -
    282A  HIS*     1.3    81.1    -      -       +      +
    284A  LYS*     1.3    58.9    +      -       -      +
    286A  ALA*     3.2     5.2    +      -       -      +
    287A  ALA*     2.9    27.4    +      -       -      +
    291B  LEU*     4.5     4.7    -      -       +      +
    311B  ALA*     4.0    18.4    -      -       +      +
    314B  LEU*     4.2    13.2    -      -       +      -
    315B  PHE*     3.8    39.7    -      -       +      +
    366B  ILE*     3.8    26.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 284 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    280A  ASP*     3.3    30.5    +      -       -      +
    281A  MET*     3.4    10.8    -      -       +      +
    283A  VAL*     1.3    80.8    -      -       -      +
    285A  ILE*     1.3    57.6    +      -       -      +
    287A  ALA*     4.3     5.6    -      -       -      -
    288A  ALA*     2.9    30.0    +      -       -      +
    315A  PHE*     3.7    12.8    -      -       +      -
    319A  ALA*     4.1    13.7    -      -       +      +
    322A  GLU*     3.1    40.4    +      -       +      +
    323A  VAL*     3.5    26.0    -      -       +      +
    326A  GLU*     6.3     1.0    -      -       -      +
    315B  PHE*     5.4     3.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 285 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    244A  VAL*     4.2    13.1    -      -       +      +
    247A  ALA*     3.7    31.0    -      -       +      +
    248A  ARG*     4.0     5.8    -      -       +      +
    251A  PHE*     3.5    38.8    -      -       +      -
    281A  MET      3.1    22.6    +      -       -      +
    282A  HIS*     3.6     6.7    -      -       -      +
    284A  LYS*     1.3    75.4    -      -       -      +
    286A  ALA*     1.3    58.2    +      -       -      +
    288A  ALA*     3.3     6.3    +      -       -      +
    289A  ARG*     2.9    56.2    +      -       -      +
    319A  ALA*     5.4     0.9    -      -       -      -
    323A  VAL*     4.0     8.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 286 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    282A  HIS*     2.9    35.2    +      -       +      +
    283A  VAL*     3.6     5.6    -      -       -      +
    285A  ILE*     1.3    75.9    -      -       -      +
    287A  ALA*     1.3    59.5    +      -       -      +
    289A  ARG*     3.4    14.0    +      -       -      +
    290A  ALA*     2.9    31.0    +      -       -      +
    291B  LEU*     3.7    16.3    -      -       +      +
    294B  GLU*     4.9     9.0    -      -       -      +
    311B  ALA*     5.6     2.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 287 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    283A  VAL      2.9    16.8    +      -       -      +
    284A  LYS*     3.8     1.6    -      -       -      +
    286A  ALA*     1.3    76.2    -      -       -      +
    288A  ALA*     1.3    64.3    +      -       -      +
    290A  ALA*     3.3     4.0    +      -       -      +
    291A  LEU*     3.0    27.0    +      -       -      +
    315A  PHE*     3.7    25.6    -      -       +      -
    287B  ALA*     4.3    11.5    -      -       +      +
    291B  LEU*     3.7    27.3    -      -       +      +
    315B  PHE*     4.3     5.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 288 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    244A  VAL*     3.8    19.7    -      -       +      -
    284A  LYS      2.9    19.7    +      -       -      +
    285A  ILE*     3.5     7.4    -      -       -      +
    287A  ALA*     1.3    76.7    -      -       -      +
    289A  ARG*     1.3    64.1    +      -       -      +
    291A  LEU*     3.2     6.0    +      -       -      +
    292A  VAL*     3.0    24.8    +      -       -      +
    312A  ALA      5.9     0.2    -      -       -      -
    315A  PHE*     3.7    18.8    -      -       +      -
    316A  ALA*     4.0    16.1    -      -       -      +
    319A  ALA*     4.4     4.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 289 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69A  LEU*     4.2    13.4    -      -       +      +
     72A  GLU*     2.8    42.7    +      -       -      +
    244A  VAL*     4.0    12.7    -      -       +      +
    248A  ARG*     3.8    15.0    -      -       -      +
    282A  HIS*     6.3     0.6    -      -       -      -
    285A  ILE*     2.9    44.4    +      -       -      +
    286A  ALA*     3.8    11.9    -      -       -      +
    288A  ALA*     1.3    75.1    -      -       -      +
    290A  ALA*     1.3    62.6    +      -       -      +
    292A  VAL*     3.0     7.6    +      -       +      +
    293A  LEU*     2.9    40.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 290 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    286A  ALA      2.9    17.9    +      -       -      +
    287A  ALA*     3.6     7.0    -      -       -      +
    289A  ARG*     1.3    76.6    -      -       -      +
    291A  LEU*     1.3    63.2    +      -       -      +
    293A  LEU*     3.3     7.4    +      -       -      +
    294A  GLU*     3.0    24.3    +      -       -      +
    297A  ARG*     5.2     0.7    +      -       -      -
    290B  ALA*     3.7    31.7    -      -       +      +
    291B  LEU*     4.6     3.4    -      -       +      -
    294B  GLU*     4.3    17.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 291 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    287A  ALA      3.0    14.9    +      -       -      +
    288A  ALA*     3.6     7.6    -      -       -      +
    290A  ALA*     1.3    75.0    -      -       -      +
    292A  VAL*     1.3    63.4    +      -       -      +
    294A  GLU*     3.3    17.4    +      -       -      +
    295A  ALA*     3.2    22.5    +      -       -      +
    308A  GLU*     4.9     2.0    -      -       -      +
    311A  ALA*     4.0    16.6    -      -       +      +
    312A  ALA*     4.0    15.0    -      -       +      +
    315A  PHE*     3.8    31.0    -      -       +      -
    283B  VAL*     4.4     7.9    -      -       +      +
    286B  ALA*     3.9    18.8    -      -       +      +
    287B  ALA*     3.9    37.9    -      -       +      +
    290B  ALA*     4.6     1.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 292 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68A  ALA*     3.9    26.5    -      -       +      -
    237A  VAL*     4.2    12.0    -      -       +      +
    240A  ALA*     3.6    35.0    -      -       +      -
    241A  ALA*     4.1    14.1    -      -       +      -
    244A  VAL*     4.0    11.0    -      -       +      -
    288A  ALA      3.0    18.8    +      -       -      +
    289A  ARG*     3.4    10.3    -      -       +      +
    291A  LEU*     1.3    76.6    -      -       -      +
    293A  LEU*     1.3    60.0    +      -       +      +
    295A  ALA*     3.3     5.2    +      -       -      +
    296A  ALA*     3.0    24.6    +      -       -      +
    312A  ALA*     4.1     9.9    -      -       +      -
    316A  ALA*     4.8     2.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 293 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     65A  VAL*     4.2    20.6    -      -       +      -
     68A  ALA*     4.3    17.3    -      -       +      -
     69A  LEU*     4.1    33.2    -      -       +      -
    289A  ARG*     2.9    34.7    +      -       +      +
    290A  ALA*     4.0     6.5    -      -       -      +
    292A  VAL*     1.3    76.4    -      -       +      +
    294A  GLU*     1.3    64.7    +      -       -      +
    296A  ALA*     3.5     3.6    -      -       -      +
    297A  ARG*     3.0    57.9    +      -       -      +
    294B  GLU*     5.9     2.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 294 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    290A  ALA      3.0    18.0    +      -       -      +
    291A  LEU*     3.5    17.5    -      -       -      +
    293A  LEU*     1.3    77.1    -      -       -      +
    295A  ALA*     1.3    62.5    +      -       -      +
    297A  ARG*     3.9    15.6    -      -       -      +
    298A  LYS*     3.2    23.7    +      -       +      +
    301A  ARG*     5.0     2.7    +      -       -      +
    308A  GLU*     3.8    22.6    -      -       +      +
    286B  ALA*     4.4     9.6    -      -       -      +
    290B  ALA*     4.2    20.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 295 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    237A  VAL*     4.1    18.6    -      -       +      -
    291A  LEU      3.2     8.6    +      -       -      +
    292A  VAL      3.7     7.6    -      -       -      +
    294A  GLU*     1.3    76.8    -      -       -      +
    296A  ALA*     1.3    65.8    +      -       -      +
    298A  LYS*     3.4     3.8    +      -       -      +
    299A  LYS*     3.0    24.4    +      -       -      +
    305A  PHE*     4.0     7.0    -      -       +      -
    308A  GLU*     3.7    39.5    -      -       +      +
    309A  ALA*     4.2     0.9    -      -       -      +
    312A  ALA*     4.7     3.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 296 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  SER*     3.2    42.4    -      -       -      +
     65A  VAL*     3.9     8.3    -      -       +      +
     68A  ALA*     4.6     6.5    -      -       +      -
    237A  VAL*     4.6     9.1    -      -       +      +
    292A  VAL      3.0    13.9    +      -       -      +
    293A  LEU*     3.3    13.4    +      -       -      +
    295A  ALA*     1.3    78.0    -      -       -      +
    297A  ARG*     1.3    57.7    +      -       -      +
    299A  LYS*     3.2     7.8    -      -       -      +
    300A  ASP*     3.0    23.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 297 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     65A  VAL*     3.9    21.1    -      -       +      +
    290A  ALA      5.2     0.8    +      -       -      -
    293A  LEU*     3.0    56.3    +      -       -      +
    294A  GLU*     3.9    14.0    -      -       -      +
    296A  ALA*     1.3    72.1    -      -       -      +
    298A  LYS*     1.3    67.7    +      -       -      +
    300A  ASP*     3.0     9.9    +      -       -      +
    301A  ARG*     2.9    43.4    +      -       -      +
    297B  ARG*     4.7    19.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 298 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    294A  GLU*     3.2    15.5    +      -       +      +
    295A  ALA      3.7     4.5    -      -       -      +
    296A  ALA      3.4     0.2    -      -       -      -
    297A  ARG*     1.3    77.5    -      -       -      +
    299A  LYS*     1.3    65.2    +      -       -      +
    301A  ARG*     2.9    34.4    +      -       -      +
    302A  GLY      3.3     6.4    +      -       -      -
    303A  GLU*     3.3    43.8    +      -       +      +
    304A  ARG      3.2    21.8    -      -       -      +
    305A  PHE*     3.8     7.4    -      -       +      -
    308A  GLU*     3.4    38.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 299 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  THR*     6.5     1.6    -      -       -      -
     64A  SER*     3.0    26.5    -      -       -      +
     67A  TRP*     4.5    16.2    -      -       +      -
     94A  TYR*     4.7     9.5    -      -       -      -
    234A  SER*     2.8    30.4    +      -       -      +
    237A  VAL*     5.5     1.6    -      -       +      -
    295A  ALA      3.0    14.7    +      -       -      +
    296A  ALA*     3.2     9.0    -      -       -      +
    298A  LYS*     1.3    76.6    -      -       -      +
    300A  ASP*     1.3    59.5    +      -       -      +
    302A  GLY*     2.9    20.8    +      -       -      -
    303A  GLU      4.6     0.2    -      -       -      -
    305A  PHE*     3.6    39.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 300 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63A  ASP*     3.4    15.6    -      -       -      +
     64A  SER*     2.8    48.5    +      -       -      -
     65A  VAL*     4.0     5.2    +      -       -      +
    296A  ALA      3.0     8.9    +      -       -      +
    297A  ARG*     3.0    10.0    +      -       -      +
    299A  LYS*     1.3    78.4    -      -       -      +
    301A  ARG*     1.3    58.3    +      -       +      +
    302A  GLY      3.1     3.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 301 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    294A  GLU*     5.0     3.8    +      -       -      +
    297A  ARG*     2.9    35.2    +      -       +      +
    298A  LYS*     2.9    35.6    +      -       -      +
    300A  ASP*     1.3    77.3    -      -       +      +
    302A  GLY*     1.3    62.0    +      -       -      +
    303A  GLU*     3.2    37.3    +      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il