Contacts of the helix formed by residues 182 - 215 (chain N) in PDB entry 2DYS
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 182 (chain N).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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86N MET* 4.0 37.7 - - + +
87N ILE* 4.9 0.4 - - + -
176N MET* 5.4 2.2 - - + -
180N GLN 4.3 2.7 - - - +
181N THR* 1.3 90.2 - - + +
183N LEU* 1.3 61.7 + - - +
184N PHE 3.1 0.4 - - - +
185N VAL* 2.9 28.7 + - + +
186N TRP* 3.1 9.5 + - - -
256N HIS* 3.5 26.5 - - + +
270N TYR* 4.9 2.2 - - + -
71S TRP* 6.3 0.7 - - - +
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Residues in contact with LEU 183 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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181N THR 3.7 0.2 + - - -
182N PRO* 1.3 72.2 - - - +
184N PHE* 1.3 58.3 + - - +
186N TRP* 3.2 6.1 + - + +
187N SER* 2.8 29.3 + - - -
252N GLY* 4.3 3.3 - - - +
255N SER* 3.8 31.2 - - - +
256N HIS* 3.7 6.4 + - + +
267N PRO* 4.0 20.4 - - + -
270N TYR* 3.6 31.6 - - + -
273N MET* 3.6 36.1 - - + -
274N VAL* 3.8 21.1 - - + -
277N MET* 3.8 10.8 - - + +
319N LYS* 5.1 1.6 - - - +
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Residues in contact with PHE 184 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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74N MET 4.2 3.4 - - - -
78N PHE* 3.8 39.7 - - + -
79N GLY* 4.1 4.0 - - - -
82N LEU* 4.0 14.8 - - + -
83N VAL* 4.2 7.0 - - + -
86N MET* 4.1 18.2 - - + -
183N LEU* 1.3 77.5 - - - +
185N VAL* 1.3 62.1 + - - +
187N SER* 2.7 27.7 + - - -
188N VAL* 3.0 35.8 + - + +
249N PRO* 3.6 16.6 - - + -
252N GLY* 4.0 5.2 - - - +
253N MET* 3.6 33.4 - - + -
256N HIS* 3.1 31.9 + - + +
396N TRP* 5.6 1.1 - + + -
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Residues in contact with VAL 185 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83N VAL* 4.3 19.5 - - + +
86N MET* 3.8 33.0 - - + -
87N ILE* 4.1 18.6 - - + -
168N ILE* 3.5 41.0 - - + +
181N THR* 4.2 9.6 - - - +
182N PRO* 2.9 22.2 + - + +
184N PHE* 1.3 77.3 - - - +
186N TRP* 1.3 61.9 + - - +
188N VAL* 3.2 1.7 + - - +
189N MET* 3.0 20.3 + - - +
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Residues in contact with TRP 186 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6G GLY* 4.9 1.6 - - - -
7G ASP* 4.1 16.8 - - + -
178N GLN* 2.9 45.9 + - + -
179N TYR* 3.8 26.5 - + - -
181N THR* 3.5 19.7 - - - -
182N PRO 3.1 9.2 + - - -
183N LEU* 3.4 9.6 - - + +
185N VAL* 1.3 77.7 - - - +
187N SER* 1.3 60.8 + - - +
189N MET* 3.3 26.4 + - + +
190N ILE* 3.1 46.3 + - + +
270N TYR* 3.0 19.7 + + - -
274N VAL* 3.6 31.3 - - + +
277N MET* 3.8 13.0 - - + -
278N MET* 4.1 19.7 - - + -
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Residues in contact with SER 187 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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183N LEU 2.8 17.4 + - - -
184N PHE* 2.7 33.6 + - - -
186N TRP* 1.3 72.1 - - - +
188N VAL* 1.3 56.4 + - - +
190N ILE* 3.5 3.6 + - - +
191N THR* 2.7 34.4 + - - -
248N LEU* 3.3 25.7 - - - +
249N PRO* 3.6 8.2 - - - +
252N GLY* 3.6 5.2 - - - -
277N MET* 3.7 19.0 - - - +
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Residues in contact with VAL 188 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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74N MET 5.3 1.6 - - - +
75N ILE* 5.3 7.4 - - + -
79N GLY* 4.5 4.5 - - - -
83N VAL* 3.9 10.8 - - + -
164N PHE* 3.6 45.8 - - + -
168N ILE* 4.2 2.7 - - + -
184N PHE* 3.0 45.4 + - + +
185N VAL 3.2 6.7 + - - +
187N SER* 1.3 80.1 + - - +
189N MET* 1.3 65.9 + - - +
191N THR* 3.3 7.7 + - - -
192N ALA* 3.0 20.3 + - - +
249N PRO* 5.2 6.1 - - + -
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Residues in contact with MET 189 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6G GLY* 4.3 9.6 - - - -
7G ASP 4.2 7.9 - - - +
165N ILE* 4.3 19.1 - - + +
168N ILE* 3.7 26.9 - - + +
169N ILE* 3.3 32.3 - - + -
178N GLN* 3.8 22.9 - - - +
185N VAL 3.0 10.8 + - - +
186N TRP* 3.3 32.7 + - + +
188N VAL* 1.3 78.2 - - - +
190N ILE* 1.3 58.6 + - + +
192N ALA* 3.1 8.6 + - - +
193N VAL* 2.9 33.2 + - + +
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Residues in contact with ILE 190 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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4G ALA 3.8 17.7 - - - +
5G LYS 4.3 16.4 - - - +
186N TRP* 3.1 36.0 + - + +
187N SER* 4.0 4.0 - - - +
189N MET* 1.3 73.6 - - + +
191N THR* 1.3 65.7 + - - +
193N VAL* 3.2 3.5 + - - +
194N LEU* 3.0 30.2 + - + +
248N LEU* 4.0 15.5 - - + -
274N VAL 4.6 0.7 - - - +
277N MET* 3.6 44.9 - - + +
278N MET* 3.6 24.9 - - + -
281N GLY* 4.6 0.7 - - - -
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Residues in contact with THR 191 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75N ILE* 3.8 26.9 - - + -
187N SER 2.7 22.0 + - - -
188N VAL* 3.5 6.3 - - - -
190N ILE* 1.3 76.8 - - - +
192N ALA* 1.3 58.1 + - - +
194N LEU* 3.1 10.8 + - - +
195N LEU* 2.9 30.4 + - + +
245N ILE* 3.7 30.7 - - + +
248N LEU* 3.5 9.1 - - - +
249N PRO* 3.3 24.4 - - + +
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Residues in contact with ALA 192 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161N ALA* 3.3 30.3 - - - +
164N PHE* 4.3 10.5 - - + -
165N ILE* 3.3 24.2 - - + -
188N VAL 3.0 14.3 + - - +
189N MET* 3.3 10.3 - - - +
191N THR* 1.3 74.9 - - - +
193N VAL* 1.3 60.7 + - - +
195N LEU* 3.2 5.9 + - - -
196N LEU* 2.9 26.2 + - - +
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Residues in contact with VAL 193 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2G SER* 4.0 19.5 - - - +
4G ALA* 4.0 26.7 - - - +
5G LYS 3.5 19.5 - - - +
6G GLY* 4.8 0.2 - - - -
102G PEK 4.0 16.6 - - + -
165N ILE* 3.8 20.0 - - + -
189N MET* 2.9 22.9 + - + +
190N ILE 3.2 6.7 + - - +
192N ALA* 1.3 75.0 - - - +
194N LEU* 1.3 62.7 + - - +
196N LEU* 3.2 4.3 + - + +
197N LEU* 3.1 31.3 + - + +
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Residues in contact with LEU 194 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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4G ALA* 3.6 18.8 - - + +
190N ILE* 3.0 22.8 + - + +
191N THR* 3.1 8.0 + - - +
193N VAL* 1.3 76.4 - - - +
195N LEU* 1.3 53.3 + - - +
198N SER* 2.8 40.4 + - - -
241N PRO* 3.8 26.2 - - + +
244N TYR* 4.0 9.9 - - + -
245N ILE* 3.6 13.0 - - + -
248N LEU* 4.0 20.2 - - + -
281N GLY* 3.6 24.2 - - - +
284N GLY* 6.2 0.4 - - - -
285N PHE* 3.5 27.3 - - + -
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Residues in contact with LEU 195 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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71N MET* 3.6 22.7 - - + -
75N ILE* 4.1 30.3 - - + -
157N SER* 4.1 19.3 - - - +
158N ILE* 4.3 1.8 - - - +
161N ALA* 4.1 8.7 - - + -
191N THR* 2.9 19.5 + - + +
192N ALA* 3.4 13.2 - - - +
194N LEU* 1.3 75.8 - - - +
196N LEU* 1.3 65.8 - - - +
198N SER* 3.8 3.4 - - - -
199N LEU* 3.1 56.9 + - + +
200N PRO* 3.7 0.3 - - - +
242N GLU* 4.6 1.6 - - - +
245N ILE* 3.7 18.4 - - + -
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Residues in contact with LEU 196 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2G SER* 4.9 5.8 - - - +
158N ILE* 4.3 13.2 - - + +
161N ALA* 4.4 5.8 - - + +
162N ILE* 3.8 29.8 - - + +
165N ILE* 4.4 7.2 - - + -
192N ALA 2.9 17.1 + - - +
193N VAL* 3.5 6.5 - - - +
195N LEU* 1.3 78.1 - - - +
197N LEU* 1.3 60.4 + - + +
200N PRO* 3.1 25.5 - - - +
85P LEU* 3.8 45.8 - - + +
88P ILE* 4.1 17.5 - - + -
89P SER* 3.8 19.6 - - - -
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Residues in contact with LEU 197 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1G ALA* 4.5 2.7 - - + -
2G SER* 3.8 20.4 - - - +
3G ALA 3.7 39.7 - - - +
193N VAL* 3.1 17.9 + - + +
196N LEU* 1.3 81.1 - - + +
198N SER* 1.3 59.9 + - - +
200N PRO* 3.8 3.2 - - - +
201N VAL* 3.8 7.1 - - - +
237N PHE* 4.8 0.7 - - - -
285N PHE* 3.6 26.2 - - + -
88P ILE* 3.6 30.5 - - + -
92P LEU* 3.4 38.5 - - + +
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Residues in contact with SER 198 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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194N LEU 2.8 23.9 + - - -
195N LEU* 3.8 1.7 + - - -
197N LEU* 1.3 75.3 - - - +
199N LEU* 1.3 67.3 + - - +
200N PRO* 3.2 3.1 - - - -
201N VAL* 3.1 16.0 + - - +
202N LEU 3.2 8.0 + - - -
237N PHE* 5.1 1.3 - - - -
238N PHE* 3.5 32.6 - - - +
241N PRO* 3.9 22.2 - - - -
245N ILE* 3.6 13.7 - - - +
285N PHE* 4.0 7.8 - - - -
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Residues in contact with LEU 199 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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67N PHE* 5.1 8.5 - - + -
71N MET* 5.6 0.7 - - + -
150N LEU 5.8 0.2 - - - +
154N GLY* 3.7 24.5 - - - +
157N SER* 3.4 33.9 - - - +
158N ILE* 3.9 14.6 - - + -
195N LEU* 3.1 30.4 + - + +
198N SER* 1.3 79.2 + - - +
200N PRO* 1.4 61.4 - - + +
202N LEU* 3.1 20.2 + - + +
203N ALA* 2.8 29.5 + - - +
238N PHE* 3.6 28.9 - - + -
242N GLU* 5.4 0.2 - - - +
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Residues in contact with PRO 200 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158N ILE* 4.0 2.9 - - + -
195N LEU 3.7 1.1 - - - +
196N LEU 3.1 27.8 - - - +
197N LEU 3.8 2.7 - - - -
198N SER 3.3 4.0 - - - -
199N LEU* 1.4 92.5 - - + +
201N VAL* 1.3 61.3 + - - +
204N ALA* 2.9 23.6 + - - +
89P SER* 3.4 31.9 - - - +
92P LEU* 3.7 6.3 - - + -
93P PHE* 3.4 23.4 - - - +
301P DCW 3.7 26.9 - - + -
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Residues in contact with VAL 201 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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197N LEU 3.8 16.4 - - - +
198N SER 3.1 6.2 + - - +
200N PRO* 1.3 73.8 - - - +
202N LEU* 1.3 66.4 + - - +
204N ALA* 3.1 7.5 + - - +
205N GLY* 3.0 19.8 + - - -
234N LEU* 3.6 42.4 - - + +
237N PHE* 3.8 34.1 - - + -
238N PHE* 5.1 0.9 - - + -
92P LEU* 3.9 22.4 - - + +
95P THR* 5.1 4.9 - - + -
96P GLY* 4.8 5.8 - - - +
99P TRP* 4.7 4.7 - - + -
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Residues in contact with LEU 202 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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67N PHE* 5.1 7.4 - - + -
150N LEU* 5.0 16.2 - - + +
198N SER 3.2 3.0 + - - -
199N LEU* 3.1 31.7 + - + +
201N VAL* 1.3 77.1 - - - +
203N ALA* 1.3 64.0 + - - +
205N GLY* 3.1 3.5 + - - -
206N ILE* 2.9 47.3 + - + +
231N TYR* 6.0 0.2 - - + -
234N LEU 4.5 4.5 - - - -
235N PHE* 3.9 28.9 - - + +
238N PHE* 3.6 45.6 - - + +
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Residues in contact with ALA 203 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151N HIS* 4.3 6.7 - - + -
158N ILE* 6.1 0.2 - - + -
199N LEU 2.8 15.9 + - - +
200N PRO 3.6 5.4 - - - +
202N LEU* 1.3 78.5 - - - +
204N ALA* 1.3 61.2 + - - +
206N ILE* 3.6 12.0 - - - +
207N THR* 2.8 30.0 + - - -
93P PHE* 3.8 14.1 - - + -
301P DCW 4.0 17.7 - - + -
305P PEK 4.3 9.2 - - + -
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Residues in contact with ALA 204 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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200N PRO 2.9 13.7 + - - +
201N VAL 3.1 9.4 + - - +
203N ALA* 1.3 75.2 - - - +
205N GLY* 1.3 62.6 + - - +
207N THR* 3.1 3.1 + - - -
208N MET* 3.1 35.7 + - + +
93P PHE* 3.5 32.3 - - + +
96P GLY* 3.8 18.4 - - - -
97P PHE* 4.1 6.9 - - + -
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Residues in contact with GLY 205 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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201N VAL 3.0 12.9 + - - -
202N LEU* 3.1 3.8 + - - -
204N ALA* 1.3 76.7 - - - +
206N ILE* 1.3 61.8 + - - +
208N MET* 3.3 7.0 + - - +
209N LEU* 3.2 19.4 + - - +
220N PHE* 3.8 7.1 - - - -
231N TYR* 4.0 9.2 - - - -
234N LEU* 4.1 28.4 - - - +
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Residues in contact with ILE 206 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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128N VAL* 5.9 1.6 - - + -
147N ILE* 3.5 40.1 - - + +
150N LEU* 3.6 41.3 - - + -
151N HIS* 3.8 20.0 - - + +
202N LEU* 2.9 46.0 + - + +
203N ALA* 3.6 9.6 - - - +
205N GLY* 1.3 70.8 - - - -
207N THR* 1.3 61.7 + - - +
209N LEU* 3.7 8.7 - - + -
210N LEU 3.1 18.2 + - - -
231N TYR* 4.1 18.4 - - + +
235N PHE* 6.0 0.2 - - + -
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Residues in contact with THR 207 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151N HIS* 3.1 20.2 + - - -
203N ALA 2.8 22.0 + - - -
204N ALA* 3.4 6.7 - - - -
206N ILE* 1.3 76.7 - - - +
208N MET* 1.3 61.7 + - - +
209N LEU 3.1 0.2 - - - -
210N LEU* 3.0 7.7 + - + +
211N THR* 2.9 36.6 + - + +
93P PHE* 4.4 3.0 - - - -
97P PHE* 4.5 6.1 - - + -
199P VAL* 5.4 1.6 - - + -
203P PHE* 4.1 30.3 - - + -
305P PEK 4.0 23.4 - - + +
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Residues in contact with MET 208 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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204N ALA* 3.1 26.0 + - + +
205N GLY 3.3 2.7 + - - +
207N THR* 1.3 78.1 - - - +
209N LEU* 1.3 55.9 + - - +
211N THR* 3.0 10.5 + - - -
212N ASP* 3.0 32.4 + - - +
219N PHE* 3.5 30.7 - - + -
220N PHE* 3.6 17.9 - - + -
234N LEU* 3.9 18.2 - - + -
96P GLY 3.6 24.9 - - - +
97P PHE* 3.4 37.0 - - + -
100P ALA* 3.7 21.3 - - + -
199P VAL* 5.5 0.7 - - + -
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Residues in contact with LEU 209 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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128N VAL* 3.6 38.6 - - + +
130N PRO* 3.9 28.9 - - + -
133N ALA* 4.2 10.1 - - + +
134N GLY* 4.9 1.6 - - - +
143N VAL* 4.8 1.3 - - + -
147N ILE* 4.0 17.9 - - + -
205N GLY 3.2 12.8 + - - +
206N ILE* 3.7 10.8 - - + +
207N THR 3.1 0.4 - - - -
208N MET* 1.3 76.5 - - - +
210N LEU* 1.3 62.6 + - - +
212N ASP* 3.3 6.2 + - + +
213N ARG* 3.0 43.6 + - + +
220N PHE* 3.5 15.0 - - + -
231N TYR* 4.2 11.0 - - + +
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Residues in contact with LEU 210 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144N ASP* 3.3 28.5 - - + +
147N ILE* 3.9 17.0 - - + +
148N PHE* 4.0 35.0 - - + -
151N HIS* 4.8 5.6 - - + -
206N ILE 3.1 15.6 + - - +
207N THR* 3.0 10.7 + - - +
209N LEU* 1.3 77.6 - - - +
211N THR* 1.3 58.3 + - + +
213N ARG 3.3 0.7 + - - -
214N ASN* 2.9 42.5 + - - +
35P PHE* 4.2 14.6 - - + -
305P PEK 3.8 34.8 - - + -
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Residues in contact with THR 211 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207N THR* 2.9 27.7 + - + +
208N MET* 3.0 10.6 + - - -
210N LEU* 1.3 74.9 - - + +
212N ASP* 1.3 60.5 + - - +
215N LEU* 2.6 52.5 + - + +
216N ASN 3.2 5.4 + - - -
217N THR* 2.7 32.6 + - + -
219N PHE* 3.5 13.3 - - - -
199P VAL* 5.0 7.2 - - + -
305P PEK 4.7 19.1 - - + -
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Residues in contact with ASP 212 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135N ASN* 3.5 12.0 + - - -
208N MET 3.0 16.7 + - - +
209N LEU* 3.6 10.3 - - + +
211N THR* 1.3 76.6 - - - +
213N ARG* 1.3 62.3 + - + +
216N ASN 4.4 2.6 + - - -
217N THR* 2.7 43.1 + - - +
218N THR* 3.7 2.3 - - - -
219N PHE* 3.0 20.4 + - - -
220N PHE* 3.0 35.6 + - + +
221N ASP* 4.0 5.5 + - + +
57T THR* 3.7 9.4 + - - -
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Residues in contact with ARG 213 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133N ALA 2.8 33.0 + - - +
134N GLY* 3.0 16.8 + - - -
135N ASN* 3.0 41.2 + - + +
138N HIS 2.8 24.2 + - - -
140N GLY 2.8 23.0 + - - +
143N VAL* 3.5 26.6 - - - +
144N ASP* 2.7 36.8 + - - +
147N ILE* 4.5 0.9 - - - -
209N LEU* 3.0 31.6 + - + +
211N THR 3.2 0.2 - - - -
212N ASP* 1.3 80.7 - - + +
214N ASN* 1.3 70.6 + - - +
36P HIS* 4.6 1.2 - - - -
58T LYS* 3.5 12.9 - - - +
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Residues in contact with ASN 214 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144N ASP* 2.9 31.9 + - - +
210N LEU* 2.9 25.7 + - - +
211N THR 3.3 0.2 + - - -
213N ARG* 1.3 85.8 - - - +
215N LEU* 1.3 68.2 + - + +
216N ASN* 3.6 4.6 + - - -
35P PHE* 3.2 54.1 - - + +
36P HIS* 3.7 7.8 + - - -
58T LYS* 3.5 28.4 + - - +
59T PRO 4.7 4.3 - - - +
60T PHE* 4.7 8.0 - - - -
61T SER* 5.1 1.2 + - - -
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Residues in contact with LEU 215 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211N THR* 2.6 36.6 + - + +
214N ASN* 1.3 83.0 - - - +
216N ASN* 1.3 69.1 + - - +
217N THR* 3.3 1.9 + - + +
35P PHE* 4.3 19.3 - - + -
188P ILE* 3.7 21.4 - - + +
305P PEK 3.8 58.1 - - + +
60T PHE* 3.4 15.1 - - + -
61T SER* 6.1 0.4 - - - +
62T TRP* 4.0 31.0 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il