Contacts of the helix formed by residues 1252 - 1281 (chain D) in PDB entry 2F8N


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with SER1252 (chain D).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1251D  ILE*     1.3    75.4    -      -       -      +
   1253D  SER*     1.3    54.7    +      -       -      +
   1254D  LYS*     3.4     6.2    +      -       -      +
   1255D  ALA*     2.7    35.3    +      -       -      +
   1256D  MET*     2.7    33.4    +      -       -      +
     19I    A      3.6    11.0    -      -       -      -
     77K  ARG*     3.4    16.6    -      -       -      +
     78K  ILE      3.0    14.8    +      -       -      -
     79K  ILE*     4.3    10.3    -      -       -      -
     80K  PRO*     3.7     9.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER1253 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1251D  ILE      3.9     1.0    +      -       -      -
   1252D  SER*     1.3    71.7    -      -       -      +
   1254D  LYS*     1.3    66.7    +      -       -      +
   1256D  MET*     3.2     8.8    +      -       -      +
   1257D  GLY*     2.9    20.6    +      -       -      -
     18I    G      5.3     0.2    -      -       -      -
     19I    A      2.7    39.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS1254 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1252D  SER*     3.1     8.1    +      -       -      +
   1253D  SER*     1.3    86.1    +      -       -      +
   1255D  ALA*     1.3    61.9    +      -       -      +
   1257D  GLY*     3.2     9.8    +      -       -      -
   1258D  ILE*     3.3    16.8    +      -       -      +
    299F  GLY*     5.3     2.3    -      -       -      -
     19I    A      4.2     0.6    +      -       -      +
     80K  PRO*     3.8    16.5    -      -       +      +
    104K  GLN*     4.6    23.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA1255 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1251D  ILE*     3.5    12.5    -      -       +      +
   1252D  SER*     2.7    25.6    +      -       -      +
   1254D  LYS*     1.3    70.7    -      -       -      +
   1256D  MET*     1.3    65.8    +      -       -      +
   1257D  GLY      3.0     1.7    +      -       -      -
   1258D  ILE*     3.2     7.8    +      -       -      +
   1259D  MET*     3.1    20.1    +      -       -      +
     78K  ILE*     3.4    22.4    -      -       +      +
     79K  ILE      3.7    17.0    -      -       -      +
     80K  PRO*     3.7     7.6    -      -       -      +
     83K  LEU*     3.7     7.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET1256 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1235D  SER*     3.4    54.5    -      -       -      +
   1238D  VAL*     3.8    29.4    -      -       +      -
   1239D  TYR*     4.1    14.1    -      -       +      +
   1242D  LEU*     5.9     0.2    -      -       +      -
   1251D  ILE*     3.6    32.2    -      -       +      +
   1252D  SER      2.7    19.3    +      -       -      +
   1253D  SER*     3.2    10.3    +      -       -      +
   1255D  ALA*     1.3    73.1    -      -       -      +
   1257D  GLY*     1.4    52.5    +      -       -      +
   1259D  MET*     3.2     5.5    -      -       -      +
   1260D  ASN*     2.8    35.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY1257 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1253D  SER      2.9    13.3    +      -       -      -
   1254D  LYS*     3.2     6.7    +      -       -      -
   1255D  ALA      3.0     0.4    -      -       -      -
   1256D  MET*     1.4    73.7    -      -       -      +
   1258D  ILE*     1.3    65.9    +      -       -      +
   1260D  ASN*     2.8    19.0    +      -       -      +
   1261D  SER*     2.9    17.9    +      -       -      -
    299F  GLY*     4.3     9.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE1258 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1254D  LYS      3.3     8.4    +      -       -      +
   1255D  ALA      3.5     6.1    -      -       -      +
   1257D  GLY*     1.3    73.9    -      -       -      +
   1259D  MET*     1.3    53.5    +      -       -      +
   1261D  SER*     2.8    10.3    +      -       -      -
   1262D  PHE*     2.7    35.2    +      -       +      +
    298F  TYR*     3.9    21.7    -      -       +      +
    299F  GLY*     4.2    15.8    -      -       -      +
     80K  PRO*     3.1    45.3    -      -       +      -
     83K  LEU*     3.5    20.9    -      -       +      -
    102K  ILE*     3.3    30.5    -      -       +      -
    103K  ALA*     4.0     5.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET1259 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1238D  VAL*     3.4    35.4    -      -       +      -
   1251D  ILE*     4.6     4.9    -      -       +      -
   1255D  ALA      3.1     7.6    +      -       -      +
   1256D  MET*     3.2    16.4    -      -       -      +
   1258D  ILE*     1.3    80.2    -      -       -      +
   1260D  ASN*     1.3    62.2    +      -       -      +
   1262D  PHE*     3.2    26.4    +      -       +      +
   1263D  VAL*     3.0    30.0    +      -       +      +
     59K  THR*     4.4    15.9    -      -       +      +
     62K  ILE*     3.7    31.2    -      -       +      -
     63K  LEU*     4.5    10.3    -      -       +      -
     83K  LEU*     3.7    28.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with ASN1260 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1233D  SER*     3.2    32.9    +      -       -      -
   1234D  TYR*     3.3    24.4    +      -       -      +
   1235D  SER*     3.7    14.1    +      -       -      +
   1238D  VAL*     5.7     0.2    -      -       -      -
   1256D  MET*     2.8    15.5    +      -       -      +
   1257D  GLY*     2.8    13.8    +      -       -      +
   1259D  MET*     1.3    73.6    -      -       -      +
   1261D  SER*     1.3    67.8    +      -       -      +
   1262D  PHE      3.1     0.3    +      -       -      -
   1263D  VAL*     3.2     6.0    +      -       -      +
   1264D  ASN*     2.9    46.3    +      -       -      +
    301F  GLY      6.1     1.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER1261 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1257D  GLY      2.9     7.7    +      -       -      -
   1258D  ILE      2.8     8.0    +      -       -      -
   1260D  ASN*     1.3    76.4    -      -       -      +
   1262D  PHE*     1.3    57.7    +      -       -      +
   1264D  ASN*     3.8     6.0    -      -       -      +
   1265D  ASP*     2.8    31.5    +      -       -      +
    297F  LEU      4.8     1.7    +      -       -      -
    298F  TYR*     3.4    31.7    -      -       -      -
    299F  GLY*     2.8    22.7    +      -       -      -
    300F  PHE      4.1     3.6    +      -       -      -
    301F  GLY*     4.3    10.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE1262 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1258D  ILE*     2.7    16.5    +      -       +      +
   1259D  MET*     3.3    23.6    -      -       +      +
   1261D  SER*     1.3    72.9    -      -       -      +
   1263D  VAL*     1.3    73.4    +      -       +      +
   1265D  ASP*     3.0     4.0    +      -       -      +
   1266D  ILE*     3.0    51.1    +      -       +      +
    298F  TYR*     3.5    16.3    -      +       +      -
     55K  LEU*     5.0     2.2    -      -       +      -
     58K  LEU*     3.8    37.0    -      -       +      -
     59K  THR*     4.1     4.9    -      -       -      -
     62K  ILE*     3.5    35.7    -      -       +      -
     93K  LEU*     5.3     0.2    -      -       +      -
     96K  LEU*     4.4     7.2    -      -       +      -
     97K  LEU*     3.9    30.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL1263 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1234D  TYR*     3.3    47.1    -      -       +      +
   1238D  VAL*     4.6     7.2    -      -       +      -
   1259D  MET*     3.0    15.1    +      -       +      +
   1260D  ASN      3.7     5.4    -      -       -      +
   1262D  PHE*     1.3    86.7    -      -       +      +
   1264D  ASN*     1.3    58.2    +      -       -      +
   1266D  ILE*     3.6     0.4    +      -       -      -
   1267D  PHE*     2.8    28.2    +      -       -      +
     25K  PHE*     4.0    17.0    -      -       +      -
     55K  LEU*     3.9    19.0    -      -       +      +
     59K  THR*     3.7    24.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASN1264 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1234D  TYR*     3.9    18.1    +      -       -      -
   1260D  ASN*     2.9    46.4    +      -       -      +
   1261D  SER*     3.8     6.4    -      -       -      +
   1263D  VAL*     1.3    74.7    -      -       -      +
   1265D  ASP*     1.3    67.6    +      -       -      +
   1267D  PHE*     3.4     7.4    +      -       -      +
   1268D  GLU*     3.0    22.3    +      -       -      +
    301F  GLY      5.8     1.8    +      -       -      -
     33K  LEU*     5.5     4.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP1265 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1261D  SER      2.8    14.5    +      -       -      +
   1262D  PHE      3.0     0.9    +      -       -      +
   1264D  ASN*     1.3    75.8    -      -       -      +
   1266D  ILE*     1.3    55.2    +      -       -      +
   1268D  GLU*     2.7    28.7    +      -       -      +
   1269D  ARG*     2.8    51.8    +      -       -      +
    291F  LYS*     5.3     7.2    -      -       -      -
    296F  THR*     4.3    11.1    +      -       +      +
    298F  TYR*     2.5    39.4    +      -       +      +
    100K  VAL*     4.1     2.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE1266 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1262D  PHE*     3.0    47.5    +      -       +      +
   1265D  ASP*     1.3    71.1    -      -       -      +
   1267D  PHE*     1.3    68.2    +      -       -      +
   1269D  ARG*     4.0    33.7    -      -       +      +
   1270D  ILE*     3.0    51.6    +      -       +      +
   1299D  LEU*     5.2     4.0    -      -       +      -
     55K  LEU*     3.7    15.9    -      -       +      -
     58K  LEU*     3.9    14.6    -      -       +      -
     96K  LEU*     4.1    17.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE1267 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1234D  TYR*     3.8    15.3    -      -       -      +
   1263D  VAL      2.8    20.4    +      -       -      +
   1264D  ASN*     3.5     9.9    -      -       -      +
   1266D  ILE*     1.3    77.3    -      -       -      +
   1268D  GLU*     1.3    68.4    +      -       -      +
   1270D  ILE*     4.2     1.0    -      -       -      +
   1271D  ALA*     3.1    32.5    +      -       +      +
     30K  VAL*     3.6    38.4    -      -       +      -
     33K  LEU*     3.6    29.4    -      -       +      -
     34K  LEU*     4.0     6.3    -      -       +      -
     39K  TYR*     4.2    16.4    -      +       -      -
     51K  LEU*     4.1    16.1    -      -       +      +
     55K  LEU*     3.7    28.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU1268 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1264D  ASN      3.0    12.7    +      -       -      +
   1265D  ASP*     2.7    14.5    +      -       -      +
   1267D  PHE*     1.3    79.8    -      -       -      +
   1269D  ARG*     1.3    66.0    +      -       +      +
   1271D  ALA      3.9     0.2    -      -       -      -
   1272D  SER*     2.9    38.7    +      -       -      -
    291F  LYS*     6.0     7.2    -      -       +      -
     39K  TYR*     2.4    38.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG1269 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1265D  ASP*     2.8    56.9    +      -       -      +
   1266D  ILE*     3.1    17.1    +      -       +      +
   1268D  GLU*     1.3    74.2    -      -       +      +
   1270D  ILE*     1.3    58.7    +      -       +      +
   1272D  SER*     3.6     4.3    -      -       -      -
   1273D  GLU*     2.9    30.3    +      -       -      +
   1276D  ARG*     5.3     1.3    +      -       -      +
   1298D  LEU*     3.4    22.8    -      -       +      +
    298F  TYR*     4.0     0.2    +      -       -      -
     96K  LEU*     2.9    43.6    +      -       -      +
     97K  LEU*     3.7    13.9    -      -       -      +
    100K  VAL*     3.8     9.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE1270 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1266D  ILE*     3.0    37.2    +      -       +      +
   1269D  ARG*     1.3    73.2    -      -       -      +
   1271D  ALA*     1.3    57.6    +      -       -      +
   1272D  SER      3.1     0.2    +      -       -      -
   1273D  GLU*     3.1     2.3    +      -       -      +
   1274D  ALA*     2.7    37.2    +      -       +      +
   1291D  VAL*     4.2    18.8    -      -       +      -
   1294D  ALA*     3.8    15.6    -      -       +      +
   1295D  VAL*     4.2    12.6    -      -       +      -
   1298D  LEU*     3.4    21.3    -      -       +      -
   1299D  LEU*     5.6     3.4    -      -       +      -
     51K  LEU*     3.9    31.0    -      -       +      -
     54K  VAL*     4.3    19.1    -      -       +      -
     55K  LEU*     4.7     0.2    -      -       +      -
     58K  LEU*     5.3     0.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA1271 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1267D  PHE*     3.1    21.5    +      -       +      +
   1270D  ILE*     1.3    79.5    -      -       -      +
   1272D  SER*     1.3    52.4    +      -       -      +
   1274D  ALA*     3.4     7.2    +      -       -      +
   1275D  SER*     2.6    35.2    +      -       -      -
   1286D  ILE*     4.2     2.4    -      -       -      +
   1291D  VAL*     6.4     0.7    -      -       -      -
     34K  LEU*     4.1    16.8    -      -       +      -
     39K  TYR*     3.4    38.7    -      -       +      -
     51K  LEU*     4.8     4.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER1272 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1268D  GLU*     2.9    33.5    +      -       -      -
   1269D  ARG*     3.6     5.4    -      -       -      -
   1271D  ALA*     1.3    74.0    -      -       -      +
   1273D  GLU*     1.3    66.7    +      -       -      +
   1275D  SER*     2.9    14.6    +      -       -      -
   1276D  ARG*     2.9    43.1    +      -       -      +
     39K  TYR*     3.7     9.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLU1273 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72B  TYR*     3.1    21.9    +      -       -      -
     92B  ARG*     3.0    27.7    +      -       -      +
   1269D  ARG      2.9    18.9    +      -       -      +
   1270D  ILE      3.7     2.7    -      -       -      +
   1272D  SER*     1.3    75.0    -      -       -      +
   1274D  ALA*     1.3    64.4    +      -       -      +
   1276D  ARG*     3.3    35.7    +      -       -      +
   1277D  LEU*     2.9    18.5    +      -       +      +
   1294D  ALA*     3.9    11.9    -      -       +      -
   1297D  LEU*     3.6    20.4    -      -       +      +
   1298D  LEU*     3.9    20.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA1274 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1270D  ILE      2.7    22.5    +      -       -      +
   1271D  ALA*     3.4     8.1    -      -       -      +
   1273D  GLU*     1.3    73.3    -      -       -      +
   1275D  SER*     1.3    65.0    +      -       -      +
   1277D  LEU*     3.1     9.5    +      -       -      +
   1278D  ALA*     3.0    19.4    +      -       -      +
   1286D  ILE*     3.9    15.7    -      -       +      +
   1290D  GLU*     4.2    22.6    -      -       +      +
   1291D  VAL*     4.3     6.5    -      -       +      +
   1294D  ALA*     3.7    15.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER1275 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1271D  ALA      2.6    18.6    +      -       -      -
   1272D  SER*     2.9    13.3    +      -       -      -
   1274D  ALA*     1.3    76.0    -      -       -      +
   1276D  ARG*     1.3    67.1    +      -       -      +
   1278D  ALA*     3.0    11.3    +      -       -      +
   1279D  HIS*     3.1    20.3    +      -       -      +
   1286D  ILE*     3.5    10.7    -      -       -      +
     39K  TYR*     2.4    38.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG1276 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72B  TYR*     5.8     0.2    -      -       -      +
     88B  TYR*     6.1     6.5    -      -       +      -
     92B  ARG*     5.0    11.1    -      -       -      +
   1269D  ARG*     5.3     1.6    +      -       -      +
   1272D  SER*     2.9    36.7    +      -       -      +
   1273D  GLU*     3.4    38.4    +      -       -      +
   1275D  SER*     1.3    70.4    -      -       -      +
   1277D  LEU*     1.3    66.5    +      -       -      +
   1279D  HIS*     2.7    10.8    +      -       -      +
   1280D  TYR*     2.7    25.4    +      -       -      +
   1298D  LEU*     5.9     1.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU1277 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72B  TYR*     3.1    42.0    -      -       +      -
     75B  HIS*     3.7    32.1    -      -       +      +
   1273D  GLU*     2.9    14.3    +      -       -      +
   1274D  ALA*     3.1    10.8    -      -       -      +
   1276D  ARG*     1.3    77.6    -      -       -      +
   1278D  ALA*     1.3    63.4    +      -       -      +
   1280D  TYR*     3.3     4.8    +      -       +      +
   1281D  ASN*     3.1    30.6    +      -       -      +
   1290D  GLU*     3.7    15.7    -      -       +      +
   1293D  THR*     3.2    40.2    -      -       +      -
   1294D  ALA*     4.2     4.0    -      -       -      +
   1297D  LEU*     4.5     1.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA1278 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     75B  HIS*     5.5     0.2    -      -       -      -
   1274D  ALA      3.0     6.6    +      -       -      +
   1275D  SER*     3.0    11.5    +      -       -      +
   1277D  LEU*     1.3    79.5    -      -       -      +
   1279D  HIS*     1.3    64.7    +      -       +      +
   1281D  ASN*     3.1     9.0    +      -       -      -
   1283D  ARG*     2.8    43.4    +      -       +      +
   1284D  SER      5.5     0.4    -      -       -      -
   1285D  THR      4.2    22.9    -      -       -      +
   1286D  ILE*     4.9     5.2    -      -       +      -
   1290D  GLU*     4.6    12.9    +      -       +      +
     40K  SER*     5.7     2.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with HIS1279 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1275D  SER*     3.1    14.6    +      -       -      +
   1276D  ARG*     2.7    18.0    +      -       -      +
   1278D  ALA*     1.3    70.1    -      -       +      +
   1280D  TYR*     1.3    65.4    +      -       -      +
   1281D  ASN      3.0     1.6    -      -       -      -
   1282D  LYS*     2.8    17.9    +      -       -      +
   1283D  ARG      3.6    17.8    +      -       -      -
   1284D  SER*     5.5     2.4    -      -       -      -
   1036G  LYS      3.8    23.9    +      -       -      -
   1037G  GLY*     4.1    22.3    +      -       -      -
   1039G  PRO*     4.6    14.7    -      -       +      +
     39K  TYR      4.3    18.1    +      -       -      -
     40K  SER*     5.0     6.2    -      -       -      -
     41K  GLU*     5.7     1.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR1280 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72B  TYR*     4.4    22.7    -      +       +      -
     76B  ALA*     5.4     0.7    -      -       +      -
     78B  ARG*     3.3    21.7    +      -       -      -
     82B  THR*     3.3    14.9    +      -       -      -
     84B  MET*     3.3    19.0    -      -       +      +
     85B  ASP*     3.3    23.0    +      -       -      -
     88B  TYR*     3.1    58.8    -      +       +      -
   1276D  ARG      2.7    16.1    +      -       -      +
   1277D  LEU*     3.7     9.2    -      -       -      +
   1279D  HIS*     1.3    73.3    -      -       -      +
   1281D  ASN*     1.3    74.1    +      -       -      +
   1282D  LYS*     3.3     7.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN1281 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72B  TYR*     5.4     1.0    +      -       -      -
     75B  HIS*     3.2    32.7    -      -       +      +
     76B  ALA*     3.5    26.7    -      -       -      +
     78B  ARG*     4.5     1.6    +      -       -      -
   1277D  LEU*     3.1    25.1    +      -       -      +
   1278D  ALA*     3.1     5.2    +      -       -      +
   1279D  HIS      3.0     0.6    -      -       -      -
   1280D  TYR*     1.3    94.9    -      -       -      +
   1282D  LYS*     1.3    55.1    +      -       -      +
   1283D  ARG*     2.5    53.8    +      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il