Contacts of the helix formed by residues 95 - 124 (chain H) in PDB entry 2FG8


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LYS 95 (chain H).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41H  PHE*     4.1     4.3    -      -       -      -
     94H  GLY*     1.3    77.5    -      -       -      +
     96H  THR*     1.3    69.0    +      -       -      +
     97H  PRO*     3.2    10.8    -      -       +      -
     98H  ASP*     2.8    31.6    +      -       -      +
     99H  ALA*     2.8    11.1    +      -       -      +
    163H  ALA*     6.2     3.5    -      -       +      +
    164H  GLY*     5.6     6.9    -      -       -      +
    167H  GLU*     3.8    23.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 96 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41H  PHE*     4.0    11.8    -      -       -      -
     48H  LEU*     3.5    15.4    -      -       -      +
     51H  VAL*     3.7    21.0    -      -       +      +
     55H  PHE*     6.2     1.3    -      -       +      -
     95H  LYS*     1.3    69.2    -      -       -      +
     97H  PRO*     1.3    65.5    -      -       -      +
     99H  ALA*     3.1     2.7    +      -       +      +
    100H  MET*     2.8    36.2    +      -       +      +
    155H  LEU*     3.4    28.7    -      -       +      -
    167H  GLU*     2.9    28.7    +      -       +      +
    170H  PHE*     4.4    11.9    -      -       +      -
    175H  LEU*     5.0     1.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with PRO 97 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     95H  LYS*     3.4    13.9    -      -       +      -
     96H  THR*     1.3    94.3    -      -       -      +
     98H  ASP*     1.3    62.4    +      -       -      +
    100H  MET*     3.8     1.9    -      -       +      +
    101H  LYS*     3.1    39.1    +      -       -      +
    152H  LEU*     4.4     2.8    -      -       +      +
    155H  LEU*     3.9    37.5    -      -       +      +
    167H  GLU*     4.4     6.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 98 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     93H  TRP      3.6    13.7    -      -       -      +
     94H  GLY*     4.1     3.4    -      -       -      -
     95H  LYS*     2.8    40.3    +      -       -      +
     97H  PRO*     1.3    77.9    -      -       -      +
     99H  ALA*     1.3    63.9    +      -       -      +
    101H  LYS*     3.3    11.6    +      -       -      +
    102H  ALA*     3.0    22.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 99 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37H  LEU*     3.7    16.7    -      -       +      +
     41H  PHE*     3.5    39.3    -      -       +      -
     55H  PHE*     3.8    12.4    -      -       +      -
     93H  TRP*     3.7     8.4    +      -       -      +
     95H  LYS      2.8     8.1    +      -       -      +
     96H  THR*     3.6     4.9    -      -       -      +
     98H  ASP*     1.3    73.2    -      -       -      +
    100H  MET*     1.3    62.5    +      -       -      +
    102H  ALA*     3.3     8.9    +      -       -      +
    103H  ALA*     3.1    22.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 100 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51H  VAL*     6.1     0.4    -      -       +      -
     54H  PHE*     3.1    37.5    -      -       +      -
     55H  PHE*     4.5     9.6    -      -       +      -
     96H  THR*     2.8    25.7    +      -       +      +
     97H  PRO      3.8     1.6    -      -       -      +
     99H  ALA*     1.3    71.1    -      -       -      +
    101H  LYS*     1.3    58.4    +      -       -      +
    103H  ALA*     3.2     3.6    +      -       -      +
    104H  MET*     2.8    29.8    +      -       -      +
    148H  MET*     4.1    27.2    -      -       -      +
    151H  HIS*     3.3    31.0    -      -       +      -
    152H  LEU*     3.0    28.0    -      -       +      +
    155H  LEU*     3.8    15.0    -      -       +      -
    170H  PHE*     5.1     1.8    -      -       +      -
    175H  LEU*     4.7    10.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 101 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     97H  PRO*     3.1    25.2    +      -       -      +
     98H  ASP*     3.3    10.0    +      -       -      +
    100H  MET*     1.3    75.6    -      -       -      +
    102H  ALA*     1.3    62.0    +      -       -      +
    104H  MET*     3.4     7.4    +      -       -      +
    105H  ALA*     3.1    24.3    +      -       -      +
    152H  LEU*     4.5    19.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 102 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37H  LEU*     5.4     3.1    -      -       +      -
     93H  TRP*     4.2    29.6    -      -       +      -
     98H  ASP      3.0    13.2    +      -       -      +
     99H  ALA*     3.3    11.0    -      -       -      +
    100H  MET      3.1     0.2    -      -       -      -
    101H  LYS*     1.3    79.4    -      -       -      +
    103H  ALA*     1.3    57.1    +      -       -      +
    105H  ALA*     3.3     6.4    +      -       -      +
    106H  LEU*     2.9    26.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 103 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34H  TYR*     3.4    33.2    -      -       +      +
     37H  LEU*     5.7     3.1    -      -       +      +
     55H  PHE*     3.9    10.1    -      -       +      -
     99H  ALA      3.1    10.6    +      -       -      +
    100H  MET*     3.2     7.2    +      -       -      +
    102H  ALA*     1.3    75.7    -      -       -      +
    104H  MET*     1.3    67.3    +      -       -      +
    106H  LEU*     3.0     9.2    +      -       -      +
    107H  GLU*     2.8    26.0    +      -       -      +
    148H  MET*     3.7    14.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 104 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7E  GLN*     3.7    37.5    -      -       +      +
      8E  ILE*     4.1     1.6    -      -       +      -
    100H  MET      2.8    19.8    +      -       -      +
    101H  LYS*     3.6     9.4    -      -       -      +
    103H  ALA*     1.3    72.3    -      -       -      +
    105H  ALA*     1.3    64.9    +      -       -      +
    107H  GLU*     3.0     4.1    +      -       -      +
    108H  LYS*     3.0    29.4    +      -       +      +
    145H  ILE*     3.7    33.7    -      -       -      +
    148H  MET*     3.7    18.7    -      -       +      -
    149H  GLY*     3.8    17.9    -      -       -      +
    152H  LEU*     3.5    29.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 105 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    101H  LYS      3.1    10.9    +      -       -      +
    102H  ALA*     3.4    10.8    -      -       -      +
    104H  MET*     1.3    81.8    -      -       -      +
    106H  LEU*     1.3    62.1    +      -       -      +
    108H  LYS*     3.1     9.7    +      -       -      +
    109H  LYS*     3.1    23.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 106 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26H  LEU      5.7     0.4    -      -       -      +
     29H  GLN*     6.5     0.2    -      -       +      -
     30H  ALA*     3.9    22.4    -      -       +      -
     33H  THR*     3.7    32.3    -      -       +      +
     34H  TYR*     3.7    32.8    -      -       +      +
    102H  ALA      2.9    13.5    +      -       -      +
    103H  ALA*     3.3    10.1    -      -       -      +
    105H  ALA*     1.3    77.8    -      -       -      +
    107H  GLU*     1.3    63.0    +      -       -      +
    109H  LYS*     3.4    31.1    +      -       -      +
    110H  LEU*     3.1    21.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 107 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34H  TYR*     2.7    24.0    +      -       -      +
     62H  LYS*     2.5    43.7    +      -       -      -
    103H  ALA      2.8    19.2    +      -       -      +
    104H  MET*     3.0     8.3    +      -       -      +
    106H  LEU*     1.3    71.9    -      -       -      +
    108H  LYS*     1.3    53.5    +      -       -      +
    110H  LEU*     3.1     8.2    +      -       -      +
    111H  ASN*     2.7    35.2    +      -       -      +
    141H  GLU*     2.6    29.0    -      -       -      +
    144H  LEU*     3.4    19.3    -      -       +      +
    145H  ILE*     3.8    14.6    -      -       +      -
    148H  MET*     4.0    11.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 108 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      6E  SER      4.8     1.0    +      -       -      -
      7E  GLN*     2.8    33.4    +      -       -      +
      8E  ILE*     3.8    15.5    -      -       -      +
      9E  ARG      3.7    16.3    +      -       -      -
     10E  GLN*     3.1    35.6    +      -       +      +
    104H  MET*     3.0    25.2    +      -       +      +
    105H  ALA*     3.1    10.7    +      -       -      +
    107H  GLU*     1.3    72.9    -      -       -      +
    109H  LYS*     1.3    60.2    +      -       -      +
    111H  ASN*     4.2     0.2    -      -       -      -
    112H  GLN*     2.9    25.3    +      -       -      +
    145H  ILE*     4.4    12.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 109 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26H  LEU*     4.2    35.2    +      -       +      +
     29H  GLN*     4.4    12.7    +      -       -      +
    105H  ALA      3.1    11.4    +      -       -      +
    106H  LEU*     3.7    36.6    -      -       -      +
    108H  LYS*     1.3    77.1    -      -       -      +
    110H  LEU*     1.3    61.2    +      -       -      +
    112H  GLN*     3.5     7.2    +      -       -      +
    113H  ALA*     3.1    21.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 110 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23H  LEU*     5.0     0.2    -      -       -      +
     26H  LEU*     3.5    40.6    -      -       +      +
     27H  TYR*     3.5    34.1    -      -       +      +
     30H  ALA*     4.0    16.8    -      -       +      -
     62H  LYS*     3.5    35.0    -      -       +      +
    106H  LEU*     3.1    14.5    +      -       +      +
    107H  GLU*     3.1    14.8    +      -       -      +
    109H  LYS*     1.3    81.7    -      -       -      +
    111H  ASN*     1.3    63.7    +      -       -      +
    113H  ALA*     3.3     3.8    +      -       -      +
    114H  LEU*     3.2    28.4    +      -       -      +
    141H  GLU*     4.0     4.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 111 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10E  GLN*     2.7    41.1    +      -       -      +
    107H  GLU      2.7    18.2    +      -       -      +
    108H  LYS      3.3     0.6    +      -       -      +
    110H  LEU*     1.3    71.0    -      -       -      +
    112H  GLN*     1.3    61.2    +      -       -      +
    114H  LEU*     3.2    12.1    +      -       -      +
    115H  LEU*     2.8    48.4    +      -       -      +
    138H  LEU*     4.7     7.8    -      -       -      +
    141H  GLU*     3.7    24.1    +      -       +      +
    142H  VAL*     5.3     9.4    -      -       -      +
    145H  ILE*     4.1    11.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 112 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10E  GLN*     3.5    19.9    +      -       -      +
     11E  ASN*     5.4     1.6    -      -       -      +
    108H  LYS      2.9    16.8    +      -       -      +
    109H  LYS*     3.7     8.3    -      -       -      +
    111H  ASN*     1.3    78.5    -      -       -      +
    113H  ALA*     1.3    55.4    +      -       -      +
    115H  LEU*     3.8    21.3    -      -       -      +
    116H  ASP*     2.9    64.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 113 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23H  LEU*     3.6    14.6    -      -       +      +
     26H  LEU*     3.4    33.7    -      -       +      -
    109H  LYS      3.1     8.7    +      -       -      +
    110H  LEU      3.5     6.5    -      -       -      +
    111H  ASN      3.1     0.4    -      -       -      -
    112H  GLN*     1.3    76.2    -      -       -      +
    114H  LEU*     1.3    54.9    +      -       -      +
    116H  ASP*     3.2     8.1    +      -       -      +
    117H  LEU*     2.8    34.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 114 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23H  LEU*     3.6    29.2    -      -       +      -
     27H  TYR*     3.6    21.3    -      -       -      +
    110H  LEU      3.5    11.2    -      -       -      +
    111H  ASN*     3.2     9.3    +      -       -      +
    113H  ALA*     1.3    72.9    -      -       -      +
    115H  LEU*     1.3    62.6    +      -       -      +
    117H  LEU*     3.2     6.0    +      -       -      +
    118H  HIS*     2.8    31.2    +      -       -      +
    133H  LEU*     3.9    14.4    -      -       +      +
    137H  PHE*     3.7    41.1    -      -       +      -
    138H  LEU*     4.1    15.0    -      -       +      +
    141H  GLU*     3.8    22.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 115 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10E  GLN*     4.8     1.1    -      -       +      -
     11E  ASN*     3.1    42.4    -      -       +      +
    127E  PRO*     3.5    31.7    -      -       +      +
    128E  HIS*     5.6     2.5    -      -       +      +
    111H  ASN*     2.8    37.4    +      -       -      +
    112H  GLN*     3.7    24.7    -      -       -      +
    114H  LEU*     1.3    76.6    -      -       -      +
    116H  ASP*     1.3    58.4    +      -       -      +
    118H  HIS*     3.4     4.3    +      -       -      +
    119H  ALA*     3.0    28.1    +      -       -      +
    138H  LEU*     4.3    13.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 116 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    112H  GLN*     2.9    48.2    +      -       -      +
    113H  ALA*     3.4     8.5    -      -       -      +
    114H  LEU      3.1     0.2    -      -       -      -
    115H  LEU*     1.3    75.5    -      -       -      +
    117H  LEU*     1.3    60.4    +      -       -      +
    119H  ALA*     3.1     8.9    +      -       -      +
    120H  LEU*     2.8    29.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 117 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16H  VAL*     4.5     9.2    -      -       +      -
     19H  ALA*     4.2    24.0    -      -       +      +
     20H  VAL*     4.3    22.7    -      -       +      -
     23H  LEU*     3.6    30.3    -      -       +      -
     69H  LEU*     5.4     0.9    -      -       +      -
    113H  ALA      2.8    20.6    +      -       -      +
    114H  LEU*     3.6     6.1    -      -       -      +
    116H  ASP*     1.3    72.9    -      -       -      +
    118H  HIS*     1.3    57.8    +      -       -      +
    120H  LEU*     3.4     8.2    +      -       +      +
    121H  GLY*     2.8    20.3    +      -       -      -
    129H  LEU*     3.5    24.7    -      -       +      +
    133H  LEU*     3.9    17.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 118 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    127E  PRO*     3.6    32.5    -      -       +      +
    114H  LEU      2.8    16.8    +      -       -      +
    115H  LEU*     3.6     8.3    -      -       -      +
    116H  ASP      3.1     0.2    -      -       -      -
    117H  LEU*     1.3    73.9    -      -       -      +
    119H  ALA*     1.3    67.8    +      -       -      +
    121H  GLY*     2.9    12.2    +      -       -      +
    122H  SER*     2.9    25.2    +      -       -      -
    129H  LEU*     5.0     0.2    -      -       -      -
    130H  CYS*     3.4    49.4    -      -       +      +
    133H  LEU*     3.7    15.9    -      -       +      +
    134H  GLU*     3.5    23.5    +      -       +      -
    138H  LEU*     4.5     4.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 119 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    125E  THR*     5.0    11.7    -      -       -      +
    115H  LEU      3.0    14.9    +      -       -      +
    116H  ASP*     3.4    11.9    -      -       -      +
    118H  HIS*     1.3    79.1    +      -       -      +
    120H  LEU*     1.3    61.3    +      -       -      +
    122H  SER*     3.1    10.0    +      -       -      -
    123H  ALA*     3.1    21.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 120 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15H  ASP*     4.1     7.0    -      -       +      +
     16H  VAL*     3.8    27.8    -      -       +      +
     19H  ALA*     3.9    25.1    -      -       +      -
    116H  ASP      2.8    14.2    +      -       -      +
    117H  LEU*     3.5    11.0    -      -       +      +
    119H  ALA*     1.3    75.6    -      -       -      +
    121H  GLY*     1.3    62.8    +      -       -      +
    123H  ALA*     3.1     7.3    +      -       +      +
    124H  ARG*     2.9    55.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 121 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16H  VAL*     4.6     5.6    -      -       -      -
    117H  LEU      2.8    15.6    +      -       -      -
    118H  HIS      2.9     5.5    +      -       -      -
    120H  LEU*     1.3    78.0    -      -       -      +
    122H  SER*     1.3    55.3    +      -       -      +
    124H  ARG      3.8     0.6    -      -       -      -
    125H  THR      3.2     1.9    +      -       -      -
    126H  ASP*     2.7    38.6    +      -       -      +
    129H  LEU*     3.7    20.8    -      -       -      +
    130H  CYS*     3.7     8.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with SER 122 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    118H  HIS*     2.9    23.5    +      -       -      -
    119H  ALA*     3.4    10.7    -      -       -      -
    121H  GLY*     1.3    75.4    -      -       -      +
    123H  ALA*     1.3    58.7    +      -       -      +
    125H  THR*     2.6    28.8    +      -       -      +
    130H  CYS*     3.8    11.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 123 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    119H  ALA      3.1     9.3    +      -       -      +
    120H  LEU*     3.4    12.3    -      -       +      +
    122H  SER*     1.3    79.3    -      -       -      +
    124H  ARG*     1.3    80.5    +      -       -      +
    125H  THR*     3.0     8.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 124 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11H  ASN*     4.1     7.8    -      -       -      +
     13H  SER*     3.0    36.8    -      -       -      +
     15H  ASP*     2.4    36.9    +      -       -      +
     16H  VAL*     4.1    11.2    -      -       +      -
    120H  LEU*     2.9    32.2    +      -       +      +
    121H  GLY*     4.4     2.5    -      -       -      +
    123H  ALA*     1.3    93.1    +      -       -      +
    125H  THR*     1.3    76.8    +      -       -      +
    126H  ASP*     3.4     5.6    +      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il